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Search of human proteins with 14790152
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14790152 tumor necrosis factor ligand superfamily, member 11
isoform 2 [Homo sapiens]
(244 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14790152 tumor necrosis factor ligand superfamily, member 11 ... 502 e-142
gi|4507595 tumor necrosis factor ligand superfamily, member 11 i... 502 e-142
gi|4507593 tumor necrosis factor (ligand) superfamily, member 10... 91 1e-18
gi|4557329 fas ligand [Homo sapiens] 57 2e-08
gi|4557433 CD40 ligand [Homo sapiens] 52 5e-07
gi|25952111 tumor necrosis factor alpha [Homo sapiens] 48 7e-06
gi|25952147 tumor necrosis factor ligand superfamily, member 14 ... 48 7e-06
gi|25952144 tumor necrosis factor ligand superfamily, member 14 ... 47 2e-05
gi|4505035 lymphotoxin-beta isoform a [Homo sapiens] 45 8e-05
gi|6806893 lymphotoxin alpha precursor [Homo sapiens] 39 0.005
gi|229092381 lymphotoxin alpha precursor [Homo sapiens] 39 0.005
gi|239745211 PREDICTED: hypothetical protein XP_002343409 [Homo ... 36 0.027
gi|221139926 NHS-like 1 [Homo sapiens] 30 1.9
gi|5031597 actin related protein 2/3 complex subunit 3 [Homo sap... 30 2.5
gi|22547215 peptidylprolyl isomerase-like 2 isoform b [Homo sapi... 28 5.6
gi|22547212 peptidylprolyl isomerase-like 2 isoform a [Homo sapi... 28 5.6
gi|7657473 peptidylprolyl isomerase-like 2 isoform a [Homo sapiens] 28 5.6
gi|4507597 tumor necrosis factor (ligand) superfamily, member 12... 28 9.5
gi|9558749 elongation factor-2 kinase [Homo sapiens] 28 9.5
gi|46094072 zinc finger protein 770 [Homo sapiens] 28 9.5
>gi|14790152 tumor necrosis factor ligand superfamily, member 11
isoform 2 [Homo sapiens]
Length = 244
Score = 502 bits (1292), Expect = e-142
Identities = 244/244 (100%), Positives = 244/244 (100%)
Query: 1 MDPNRISEDGTHCIYRILRLHENADFQDTTLESQDTKLIPDSCRRIKQAFQGAVQKELQH 60
MDPNRISEDGTHCIYRILRLHENADFQDTTLESQDTKLIPDSCRRIKQAFQGAVQKELQH
Sbjct: 1 MDPNRISEDGTHCIYRILRLHENADFQDTTLESQDTKLIPDSCRRIKQAFQGAVQKELQH 60
Query: 61 IVGSQHIRAEKAMVDGSWLDLAKRSKLEAQPFAHLTINATDIPSGSHKVSLSSWYHDRGW 120
IVGSQHIRAEKAMVDGSWLDLAKRSKLEAQPFAHLTINATDIPSGSHKVSLSSWYHDRGW
Sbjct: 61 IVGSQHIRAEKAMVDGSWLDLAKRSKLEAQPFAHLTINATDIPSGSHKVSLSSWYHDRGW 120
Query: 121 AKISNMTFSNGKLIVNQDGFYYLYANICFRHHETSGDLATEYLQLMVYVTKTSIKIPSSH 180
AKISNMTFSNGKLIVNQDGFYYLYANICFRHHETSGDLATEYLQLMVYVTKTSIKIPSSH
Sbjct: 121 AKISNMTFSNGKLIVNQDGFYYLYANICFRHHETSGDLATEYLQLMVYVTKTSIKIPSSH 180
Query: 181 TLMKGGSTKYWSGNSEFHFYSINVGGFFKLRSGEEISIEVSNPSLLDPDQDATYFGAFKV 240
TLMKGGSTKYWSGNSEFHFYSINVGGFFKLRSGEEISIEVSNPSLLDPDQDATYFGAFKV
Sbjct: 181 TLMKGGSTKYWSGNSEFHFYSINVGGFFKLRSGEEISIEVSNPSLLDPDQDATYFGAFKV 240
Query: 241 RDID 244
RDID
Sbjct: 241 RDID 244
>gi|4507595 tumor necrosis factor ligand superfamily, member 11
isoform 1 [Homo sapiens]
Length = 317
Score = 502 bits (1292), Expect = e-142
Identities = 244/244 (100%), Positives = 244/244 (100%)
Query: 1 MDPNRISEDGTHCIYRILRLHENADFQDTTLESQDTKLIPDSCRRIKQAFQGAVQKELQH 60
MDPNRISEDGTHCIYRILRLHENADFQDTTLESQDTKLIPDSCRRIKQAFQGAVQKELQH
Sbjct: 74 MDPNRISEDGTHCIYRILRLHENADFQDTTLESQDTKLIPDSCRRIKQAFQGAVQKELQH 133
Query: 61 IVGSQHIRAEKAMVDGSWLDLAKRSKLEAQPFAHLTINATDIPSGSHKVSLSSWYHDRGW 120
IVGSQHIRAEKAMVDGSWLDLAKRSKLEAQPFAHLTINATDIPSGSHKVSLSSWYHDRGW
Sbjct: 134 IVGSQHIRAEKAMVDGSWLDLAKRSKLEAQPFAHLTINATDIPSGSHKVSLSSWYHDRGW 193
Query: 121 AKISNMTFSNGKLIVNQDGFYYLYANICFRHHETSGDLATEYLQLMVYVTKTSIKIPSSH 180
AKISNMTFSNGKLIVNQDGFYYLYANICFRHHETSGDLATEYLQLMVYVTKTSIKIPSSH
Sbjct: 194 AKISNMTFSNGKLIVNQDGFYYLYANICFRHHETSGDLATEYLQLMVYVTKTSIKIPSSH 253
Query: 181 TLMKGGSTKYWSGNSEFHFYSINVGGFFKLRSGEEISIEVSNPSLLDPDQDATYFGAFKV 240
TLMKGGSTKYWSGNSEFHFYSINVGGFFKLRSGEEISIEVSNPSLLDPDQDATYFGAFKV
Sbjct: 254 TLMKGGSTKYWSGNSEFHFYSINVGGFFKLRSGEEISIEVSNPSLLDPDQDATYFGAFKV 313
Query: 241 RDID 244
RDID
Sbjct: 314 RDID 317
>gi|4507593 tumor necrosis factor (ligand) superfamily, member 10
[Homo sapiens]
Length = 281
Score = 90.5 bits (223), Expect = 1e-18
Identities = 46/131 (35%), Positives = 75/131 (57%), Gaps = 2/131 (1%)
Query: 111 LSSWYHDR-GWAKISNMTFSNGKLIVNQDGFYYLYANICFRHHETSGDLATEYLQLMVYV 169
++SW R G + +SN+ NG+L++++ GFYY+Y+ FR E + Q++ Y+
Sbjct: 151 INSWESSRSGHSFLSNLHLRNGELVIHEKGFYYIYSQTYFRFQEEIKENTKNDKQMVQYI 210
Query: 170 TKTSIKIPSSHTLMKGGSTKYWSGNSEFHFYSINVGGFFKLRSGEEISIEVSNPSLLDPD 229
K + P LMK WS ++E+ YSI GG F+L+ + I + V+N L+D D
Sbjct: 211 YKYT-SYPDPILLMKSARNSCWSKDAEYGLYSIYQGGIFELKENDRIFVSVTNEHLIDMD 269
Query: 230 QDATYFGAFKV 240
+A++FGAF V
Sbjct: 270 HEASFFGAFLV 280
>gi|4557329 fas ligand [Homo sapiens]
Length = 281
Score = 56.6 bits (135), Expect = 2e-08
Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 13/155 (8%)
Query: 86 KLEAQPFAHLTINATDIPSGSHKVSLSSWYHDRGWAKISNMTFSNGKLIVNQDGFYYLYA 145
K E + AHLT S S + L W G +S + + G L++N+ G Y++Y+
Sbjct: 140 KKELRKVAHLTGK-----SNSRSMPLE-WEDTYGIVLLSGVKYKKGGLVINETGLYFVYS 193
Query: 146 NICFRHHETSGDLATEYLQLMVYVTKTSIKIPSSHTLMKGGSTKYWSGNSEFHFYSINVG 205
+ FR + L L V + K P +M+G Y + + S +G
Sbjct: 194 KVYFRGQSCNN------LPLSHKVYMRNSKYPQDLVMMEGKMMSYCT-TGQMWARSSYLG 246
Query: 206 GFFKLRSGEEISIEVSNPSLLDPDQDATYFGAFKV 240
F L S + + + VS SL++ ++ T+FG +K+
Sbjct: 247 AVFNLTSADHLYVNVSELSLVNFEESQTFFGLYKL 281
>gi|4557433 CD40 ligand [Homo sapiens]
Length = 261
Score = 52.0 bits (123), Expect = 5e-07
Identities = 56/228 (24%), Positives = 98/228 (42%), Gaps = 32/228 (14%)
Query: 20 LHENADFQDTT--LESQDTKLIPDSCRRIKQAFQGAVQKELQHIVGSQHIRAEKAMVDGS 77
LHE+ F T + + L +C IK F+G V+ + + E+ + S
Sbjct: 59 LHEDFVFMKTIQRCNTGERSLSLLNCEEIKSQFEGFVKDIM--------LNKEETKKENS 110
Query: 78 WLDLAKRSKLEAQPFAHLTINATDIPSGSHKVSLSSWYHDRGWAKISN--MTFSNGK-LI 134
+ ++ Q AH+ A+ S S+ W ++G+ +SN +T NGK L
Sbjct: 111 FE--MQKGDQNPQIAAHVISEAS-----SKTTSVLQWA-EKGYYTMSNNLVTLENGKQLT 162
Query: 135 VNQDGFYYLYANICFRHHETSGDLATEYLQLMVYVTKTSIKIPS--SHTLMKGGSTKYWS 192
V + G YY+YA + F + + A ++ +K P L++ +T S
Sbjct: 163 VKRQGLYYIYAQVTFCSNREASSQAP-------FIASLCLKSPGRFERILLRAANTH--S 213
Query: 193 GNSEFHFYSINVGGFFKLRSGEEISIEVSNPSLLDPDQDATYFGAFKV 240
SI++GG F+L+ G + + V++PS + T FG K+
Sbjct: 214 SAKPCGQQSIHLGGVFELQPGASVFVNVTDPSQVSHGTGFTSFGLLKL 261
>gi|25952111 tumor necrosis factor alpha [Homo sapiens]
Length = 233
Score = 48.1 bits (113), Expect = 7e-06
Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 24/157 (15%)
Query: 90 QPFAHLTINATDIPSGSHKVSLSSWYHDRGWAKISN-MTFSNGKLIVNQDGFYYLYANIC 148
+P AH+ N P ++ W + R A ++N + + +L+V +G Y +Y+ +
Sbjct: 87 KPVAHVVAN----PQAEGQLQ---WLNRRANALLANGVELRDNQLVVPSEGLYLIYSQVL 139
Query: 149 FRHH--ETSGDLATEYLQLMV--YVTK----TSIKIPSSHTLMKGGSTKYWSGNSEFHFY 200
F+ ++ L T + + Y TK ++IK P +G K W +
Sbjct: 140 FKGQGCPSTHVLLTHTISRIAVSYQTKVNLLSAIKSPCQRETPEGAEAKPW-------YE 192
Query: 201 SINVGGFFKLRSGEEISIEVSNPSLLD-PDQDATYFG 236
I +GG F+L G+ +S E++ P LD + YFG
Sbjct: 193 PIYLGGVFQLEKGDRLSAEINRPDYLDFAESGQVYFG 229
>gi|25952147 tumor necrosis factor ligand superfamily, member 14
isoform 2 [Homo sapiens]
Length = 204
Score = 48.1 bits (113), Expect = 7e-06
Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 10/169 (5%)
Query: 76 GSWLDLAK-RSKLEAQPFAHLTINATDIPSGSHKVSLSSWYHDRGWAKISNMTFSNGKLI 134
GSW L + R E P AHLT A +GS L W G A + +++ +G L+
Sbjct: 42 GSWEQLIQERRSHEVNPAAHLT-GANSSLTGSGGPLL--WETQLGLAFLRGLSYHDGALV 98
Query: 135 VNQDGFYYLYANICFRHHETSGDLATEYLQLMVYVTKTSIKIPSSHTLMKGGSTKYWSGN 194
V + G+YY+Y+ + LA+ + K + + P L+ +
Sbjct: 99 VTKAGYYYIYSKVQLGGVGCPLGLASTITHGLY---KRTPRYPEELELLVSQQSPCGRAT 155
Query: 195 SEFHFY--SINVGGFFKLRSGEEISIEVSNPSLLD-PDQDATYFGAFKV 240
S + S +GG L +GEE+ + V + L+ D +YFGAF V
Sbjct: 156 SSSRVWWDSSFLGGVVHLEAGEEVVVRVLDERLVRLRDGTRSYFGAFMV 204
>gi|25952144 tumor necrosis factor ligand superfamily, member 14
isoform 1 precursor [Homo sapiens]
Length = 240
Score = 46.6 bits (109), Expect = 2e-05
Identities = 46/169 (27%), Positives = 74/169 (43%), Gaps = 10/169 (5%)
Query: 76 GSWLDLAK-RSKLEAQPFAHLTINATDIPSGSHKVSLSSWYHDRGWAKISNMTFSNGKLI 134
GSW L + R E P AHLT A +GS L W G A + +++ +G L+
Sbjct: 78 GSWEQLIQERRSHEVNPAAHLT-GANSSLTGSGGPLL--WETQLGLAFLRGLSYHDGALV 134
Query: 135 VNQDGFYYLYANICFRHHETSGDLATEYLQLMVYVTKTSIKIPSSHTLMKGGSTKYWSGN 194
V + G+YY+Y+ + LA+ + K + + P L+ +
Sbjct: 135 VTKAGYYYIYSKVQLGGVGCPLGLASTITHGLY---KRTPRYPEELELLVSQQSPCGRAT 191
Query: 195 SEFHFY--SINVGGFFKLRSGEEISIEVSNPSLLD-PDQDATYFGAFKV 240
S + S +GG L +GE++ + V + L+ D +YFGAF V
Sbjct: 192 SSSRVWWDSSFLGGVVHLEAGEKVVVRVLDERLVRLRDGTRSYFGAFMV 240
>gi|4505035 lymphotoxin-beta isoform a [Homo sapiens]
Length = 244
Score = 44.7 bits (104), Expect = 8e-05
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 124 SNMTFSNGK-LIVNQDGFYYLYANICFRHHETSGDLATE----YLQLMVYVTKTSIKIPS 178
S FS+ + L + QDG YYLY + +R G + L+ +Y + +
Sbjct: 115 SGTQFSDAEGLALPQDGLYYLYCLVGYRGRAPPGGGDPQGRSVTLRSSLYRAGGAYGPGT 174
Query: 179 SHTLMKGGST-------KYWSGNSEFHFYSINVGGFFKLRSGEEISIEVSNPSLLDPDQD 231
L++G T G + S+ GG +LR GE + + +S+P ++D +
Sbjct: 175 PELLLEGAETVTPVLDPARRQGYGPLWYTSVGFGGLVQLRRGERVYVNISHPDMVDFARG 234
Query: 232 ATYFGAFKV 240
T+FGA V
Sbjct: 235 KTFFGAVMV 243
>gi|6806893 lymphotoxin alpha precursor [Homo sapiens]
Length = 205
Score = 38.5 bits (88), Expect = 0.005
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 1/112 (0%)
Query: 127 TFSNGKLIVNQDGFYYLYANICFRHHETSGDLATEYLQLMVYVTKTSIKIPSSHTLMKGG 186
+ SN L+V G Y++Y+ + F S + L L V S + P H +
Sbjct: 93 SLSNNSLLVPTSGIYFVYSQVVFSGKAYSPKATSSPLYLAHEVQLFSSQYP-FHVPLLSS 151
Query: 187 STKYWSGNSEFHFYSINVGGFFKLRSGEEISIEVSNPSLLDPDQDATYFGAF 238
+ G E +S+ G F+L G+++S L +FGAF
Sbjct: 152 QKMVYPGLQEPWLHSMYHGAAFQLTQGDQLSTHTDGIPHLVLSPSTVFFGAF 203
>gi|229092381 lymphotoxin alpha precursor [Homo sapiens]
Length = 205
Score = 38.5 bits (88), Expect = 0.005
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 1/112 (0%)
Query: 127 TFSNGKLIVNQDGFYYLYANICFRHHETSGDLATEYLQLMVYVTKTSIKIPSSHTLMKGG 186
+ SN L+V G Y++Y+ + F S + L L V S + P H +
Sbjct: 93 SLSNNSLLVPTSGIYFVYSQVVFSGKAYSPKATSSPLYLAHEVQLFSSQYP-FHVPLLSS 151
Query: 187 STKYWSGNSEFHFYSINVGGFFKLRSGEEISIEVSNPSLLDPDQDATYFGAF 238
+ G E +S+ G F+L G+++S L +FGAF
Sbjct: 152 QKMVYPGLQEPWLHSMYHGAAFQLTQGDQLSTHTDGIPHLVLSPSTVFFGAF 203
>gi|239745211 PREDICTED: hypothetical protein XP_002343409 [Homo
sapiens]
Length = 1281
Score = 36.2 bits (82), Expect = 0.027
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 16 RILRLHENADFQDTTLESQDTKLIPDSCRRIKQAFQGAVQKELQHIVGSQHIRAEKAMVD 75
R+L L N ++ T + +S +++ Q G V +ELQ + GS++ A+ D
Sbjct: 774 RLLELGRNHHASPNLMDESKTFSLTESLQQLSQQLNGVVSEELQKLRGSRYQEVTVAL-D 832
Query: 76 GSWLDLAKRSK 86
S++ +++R+K
Sbjct: 833 SSYITISRRNK 843
>gi|221139926 NHS-like 1 [Homo sapiens]
Length = 1606
Score = 30.0 bits (66), Expect = 1.9
Identities = 11/43 (25%), Positives = 26/43 (60%)
Query: 22 ENADFQDTTLESQDTKLIPDSCRRIKQAFQGAVQKELQHIVGS 64
+ ++ +D++ +++D K++P S RRI+ + ++ H GS
Sbjct: 255 QRSETRDSSCQTEDVKVVPPSMRRIRAQKGQGIAAQMGHFSGS 297
>gi|5031597 actin related protein 2/3 complex subunit 3 [Homo
sapiens]
Length = 178
Score = 29.6 bits (65), Expect = 2.5
Identities = 12/60 (20%), Positives = 29/60 (48%)
Query: 138 DGFYYLYANICFRHHETSGDLATEYLQLMVYVTKTSIKIPSSHTLMKGGSTKYWSGNSEF 197
+ YY AN+ F+++E + + + +Y+++ K+ ++ +G Y G + F
Sbjct: 44 EAIYYFKANVFFKNYEIKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNF 103
>gi|22547215 peptidylprolyl isomerase-like 2 isoform b [Homo
sapiens]
Length = 527
Score = 28.5 bits (62), Expect = 5.6
Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 7/118 (5%)
Query: 84 RSKLEAQPFAHLTINATDIPSGSHKVSLSSWYHDRGWAKISNMTFSNGKLIVNQDGFYYL 143
R L +PF+ I P+ K ++S++YH + KI + K QD YYL
Sbjct: 142 RDLLTDEPFSRQDIITLQDPTNLDKFNVSNFYHVKNNMKIIDPDEEKAK----QDPSYYL 197
Query: 144 YANICFRHHETSGDLATEYLQLMVYVTKTSIKIPSSHTLMKGGSTKYWSGNSEFHFYS 201
N ET +L E+ + ++K P + K + Y +G F S
Sbjct: 198 -KNTNAETRETLQELYKEFKG--DEILAATMKAPEKKKVDKLNAAHYSTGKVSASFTS 252
>gi|22547212 peptidylprolyl isomerase-like 2 isoform a [Homo
sapiens]
Length = 520
Score = 28.5 bits (62), Expect = 5.6
Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 7/118 (5%)
Query: 84 RSKLEAQPFAHLTINATDIPSGSHKVSLSSWYHDRGWAKISNMTFSNGKLIVNQDGFYYL 143
R L +PF+ I P+ K ++S++YH + KI + K QD YYL
Sbjct: 142 RDLLTDEPFSRQDIITLQDPTNLDKFNVSNFYHVKNNMKIIDPDEEKAK----QDPSYYL 197
Query: 144 YANICFRHHETSGDLATEYLQLMVYVTKTSIKIPSSHTLMKGGSTKYWSGNSEFHFYS 201
N ET +L E+ + ++K P + K + Y +G F S
Sbjct: 198 -KNTNAETRETLQELYKEFKG--DEILAATMKAPEKKKVDKLNAAHYSTGKVSASFTS 252
>gi|7657473 peptidylprolyl isomerase-like 2 isoform a [Homo sapiens]
Length = 520
Score = 28.5 bits (62), Expect = 5.6
Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 7/118 (5%)
Query: 84 RSKLEAQPFAHLTINATDIPSGSHKVSLSSWYHDRGWAKISNMTFSNGKLIVNQDGFYYL 143
R L +PF+ I P+ K ++S++YH + KI + K QD YYL
Sbjct: 142 RDLLTDEPFSRQDIITLQDPTNLDKFNVSNFYHVKNNMKIIDPDEEKAK----QDPSYYL 197
Query: 144 YANICFRHHETSGDLATEYLQLMVYVTKTSIKIPSSHTLMKGGSTKYWSGNSEFHFYS 201
N ET +L E+ + ++K P + K + Y +G F S
Sbjct: 198 -KNTNAETRETLQELYKEFKG--DEILAATMKAPEKKKVDKLNAAHYSTGKVSASFTS 252
>gi|4507597 tumor necrosis factor (ligand) superfamily, member 12
precursor [Homo sapiens]
Length = 249
Score = 27.7 bits (60), Expect = 9.5
Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 12/110 (10%)
Query: 131 GKLIVNQDGFYYLYANICFRHHETSGDLATEYLQLMVYVTKTSIKIPSSHTLMKGGSTKY 190
G+ IV + G YYLY + F + YL+L + V + + L + +T
Sbjct: 151 GEFIVTRAGLYYLYCQVHFDEGK------AVYLKLDLLVD----GVLALRCLEEFSATAA 200
Query: 191 WSGNSEFHFYSINVGGFFKLRSGEEISIEVSNPSLLDPDQDATYFGAFKV 240
S + V G LR G + I + L TYFG F+V
Sbjct: 201 SSLGPQLRL--CQVSGLLALRPGSSLRIRTLPWAHLKAAPFLTYFGLFQV 248
>gi|9558749 elongation factor-2 kinase [Homo sapiens]
Length = 725
Score = 27.7 bits (60), Expect = 9.5
Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 16/97 (16%)
Query: 40 PDSCRRIKQAFQGAVQK-----------ELQHIVGSQHIRAEKAMVDGSWLDLAKRSKLE 88
P + K+A++ A+QK L+ I + R V G WLD K+
Sbjct: 75 PANSFHFKEAWKHAIQKAKHMPDPWAEFHLEDIATERATRHRYNAVTGEWLDDEVLIKMA 134
Query: 89 AQPFAHLTINATDIPSGSHKVSLSSWYHDRGWAKISN 125
+QPF + LS++ H + W SN
Sbjct: 135 SQPFGRGAMREC-----FRTKKLSNFLHAQQWKGASN 166
>gi|46094072 zinc finger protein 770 [Homo sapiens]
Length = 691
Score = 27.7 bits (60), Expect = 9.5
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 146 NICFRHHETSGDLATEYL 163
NICF+H ET LA YL
Sbjct: 30 NICFKHFETPSKLARHYL 47
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,114,606
Number of Sequences: 37866
Number of extensions: 370547
Number of successful extensions: 863
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 841
Number of HSP's gapped (non-prelim): 20
length of query: 244
length of database: 18,247,518
effective HSP length: 99
effective length of query: 145
effective length of database: 14,498,784
effective search space: 2102323680
effective search space used: 2102323680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.