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Search of human proteins with 145651814
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|145651814 endogenous retroviral sequence 3 [Homo sapiens]
(604 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|145651814 endogenous retroviral sequence 3 [Homo sapiens] 1283 0.0
gi|46485773 syncytin 2 [Homo sapiens] 59 1e-08
gi|195963433 syncytin precursor [Homo sapiens] 48 2e-05
gi|48949851 syncytin precursor [Homo sapiens] 48 2e-05
gi|239753837 PREDICTED: similar to Uncharacterized protein LP905... 45 1e-04
gi|239748400 PREDICTED: hypothetical protein XP_002346661 [Homo ... 45 1e-04
gi|239742330 PREDICTED: hypothetical protein XP_002342492 [Homo ... 45 1e-04
gi|239755070 PREDICTED: similar to proprotein convertase subtili... 33 0.76
gi|239749596 PREDICTED: hypothetical protein XP_002347099 [Homo ... 33 0.76
gi|239743863 PREDICTED: hypothetical protein XP_002342982 [Homo ... 33 0.76
gi|22538457 nuclear receptor coactivator 1 isoform 2 [Homo sapiens] 30 8.4
gi|22538459 nuclear receptor coactivator 1 isoform 3 [Homo sapiens] 30 8.4
gi|22538455 nuclear receptor coactivator 1 isoform 1 [Homo sapiens] 30 8.4
gi|75677365 dynein heavy chain domain 3 [Homo sapiens] 30 8.4
>gi|145651814 endogenous retroviral sequence 3 [Homo sapiens]
Length = 604
Score = 1283 bits (3321), Expect = 0.0
Identities = 604/604 (100%), Positives = 604/604 (100%)
Query: 1 MLGMNMLLITLFLLLPLSMLKGEPWEGCLHCTHTTWSGNIMTKTLLYHTYYECAGTCLGT 60
MLGMNMLLITLFLLLPLSMLKGEPWEGCLHCTHTTWSGNIMTKTLLYHTYYECAGTCLGT
Sbjct: 1 MLGMNMLLITLFLLLPLSMLKGEPWEGCLHCTHTTWSGNIMTKTLLYHTYYECAGTCLGT 60
Query: 61 CTHNQTTYSVCDPGRGQPYVCYDPKSSPGTWFEIHVGSKEGDLLNQTKVFPSGKDVVSLY 120
CTHNQTTYSVCDPGRGQPYVCYDPKSSPGTWFEIHVGSKEGDLLNQTKVFPSGKDVVSLY
Sbjct: 61 CTHNQTTYSVCDPGRGQPYVCYDPKSSPGTWFEIHVGSKEGDLLNQTKVFPSGKDVVSLY 120
Query: 121 FDVCQIVSMGSLFPVIFSSMEYYSSCHKNRYAHPACSTDSPVTTCWDCTTWSTNQQSLGP 180
FDVCQIVSMGSLFPVIFSSMEYYSSCHKNRYAHPACSTDSPVTTCWDCTTWSTNQQSLGP
Sbjct: 121 FDVCQIVSMGSLFPVIFSSMEYYSSCHKNRYAHPACSTDSPVTTCWDCTTWSTNQQSLGP 180
Query: 181 IMLTKIPLEPDCKTSTCNSVNLTILEPDQPIWTTGLKAPLGARVSGEEIGPGAYVYLYII 240
IMLTKIPLEPDCKTSTCNSVNLTILEPDQPIWTTGLKAPLGARVSGEEIGPGAYVYLYII
Sbjct: 181 IMLTKIPLEPDCKTSTCNSVNLTILEPDQPIWTTGLKAPLGARVSGEEIGPGAYVYLYII 240
Query: 241 KKTRTRSTQQFRVFESFYEHVNQKLPEPPPLASNLFAQLAENIASSLHVASCYVCGGMNM 300
KKTRTRSTQQFRVFESFYEHVNQKLPEPPPLASNLFAQLAENIASSLHVASCYVCGGMNM
Sbjct: 241 KKTRTRSTQQFRVFESFYEHVNQKLPEPPPLASNLFAQLAENIASSLHVASCYVCGGMNM 300
Query: 301 GDQWPWEARELMPQDNFTLTASSLEPAPSSQSIWFLKTSIIGKFCIARWGKAFTDPVGEL 360
GDQWPWEARELMPQDNFTLTASSLEPAPSSQSIWFLKTSIIGKFCIARWGKAFTDPVGEL
Sbjct: 301 GDQWPWEARELMPQDNFTLTASSLEPAPSSQSIWFLKTSIIGKFCIARWGKAFTDPVGEL 360
Query: 361 TCLGQQYYNETLGKTLWRGKSNNSESPHPSPFSRFPSLNHSWYQLEAPNTWQAPSGLYWI 420
TCLGQQYYNETLGKTLWRGKSNNSESPHPSPFSRFPSLNHSWYQLEAPNTWQAPSGLYWI
Sbjct: 361 TCLGQQYYNETLGKTLWRGKSNNSESPHPSPFSRFPSLNHSWYQLEAPNTWQAPSGLYWI 420
Query: 421 CGPQAYRQLPAKWSGACVLGTIRPSFFLMPLKQGEALGYPIYDETKRKSKRGITIGDWKD 480
CGPQAYRQLPAKWSGACVLGTIRPSFFLMPLKQGEALGYPIYDETKRKSKRGITIGDWKD
Sbjct: 421 CGPQAYRQLPAKWSGACVLGTIRPSFFLMPLKQGEALGYPIYDETKRKSKRGITIGDWKD 480
Query: 481 NEWPPERIIQYYGPATWAEDGMWGYRTPVYMLNRIIRLQAVLEIITNETAGALNLLAQQA 540
NEWPPERIIQYYGPATWAEDGMWGYRTPVYMLNRIIRLQAVLEIITNETAGALNLLAQQA
Sbjct: 481 NEWPPERIIQYYGPATWAEDGMWGYRTPVYMLNRIIRLQAVLEIITNETAGALNLLAQQA 540
Query: 541 TKMRNVIYQNRLALDYLLAQEEGVCGKFNLTNCCLELDDEGKVIKEITAKIQKLAHIPVQ 600
TKMRNVIYQNRLALDYLLAQEEGVCGKFNLTNCCLELDDEGKVIKEITAKIQKLAHIPVQ
Sbjct: 541 TKMRNVIYQNRLALDYLLAQEEGVCGKFNLTNCCLELDDEGKVIKEITAKIQKLAHIPVQ 600
Query: 601 TWKG 604
TWKG
Sbjct: 601 TWKG 604
>gi|46485773 syncytin 2 [Homo sapiens]
Length = 538
Score = 58.9 bits (141), Expect = 1e-08
Identities = 49/194 (25%), Positives = 81/194 (41%), Gaps = 26/194 (13%)
Query: 416 GLYWICGPQAYRQLPAKWSGACVLGTIRPSFFLMPLKQGEALGYPIYDETKRKSKRGITI 475
G ++ICG ++ LP+ W+G C +G + P F+ P +L PIY
Sbjct: 296 GAFYICGQSIHQCLPSNWTGTCTIGYVTPDIFIAP--GNLSLPIPIYG------------ 341
Query: 476 GDWKDNEWPPERIIQYYGPATWAEDGMWGYRTPVYMLNR--IIRLQAVLEIITN--ETAG 531
++ P R ++ P + G T + + + + Q EI N A
Sbjct: 342 ----NSPLPRVRRAIHFIPLLAGLGILAGTGTGIAGITKASLTYSQLSKEIANNIDTMAK 397
Query: 532 ALNLLAQQATKMRNVIYQNRLALDYLLAQEEGVCGKFNLTNCCLELDDEGKV---IKEIT 588
AL + +Q + V+ QNR LD L A + G+C + CC ++ GKV I+++
Sbjct: 398 ALTTMQEQIDSLAAVVLQNRRGLDMLTAAQGGICLALD-EKCCFWVNQSGKVQDNIRQLL 456
Query: 589 AKIQKLAHIPVQTW 602
+ L Q W
Sbjct: 457 NQASSLRERATQGW 470
>gi|195963433 syncytin precursor [Homo sapiens]
Length = 538
Score = 48.1 bits (113), Expect = 2e-05
Identities = 52/185 (28%), Positives = 72/185 (38%), Gaps = 23/185 (12%)
Query: 414 PSGLYWICGPQAYRQLPAKWSGACVLGTIRPSFFLMPLKQGEALGYPIYDETKRKSKRGI 473
PSG++++CG AYR L C L SF + P+ IY E S
Sbjct: 265 PSGIFFVCGTSAYRCLNGSSESMCFL-----SFLVPPMT--------IYTEQDLYS---Y 308
Query: 474 TIGDWKDNEWPPERIIQYYGPATWAEDGMWGYRTPVYMLNRIIRLQAVLEIITNETAGAL 533
I ++ P + G G+ G T +L L A +L
Sbjct: 309 VISKPRNKRVPILPFVIGAGVLGALGTGIGGITTSTQFY---YKLSQELNGDMERVADSL 365
Query: 534 NLLAQQATKMRNVIYQNRLALDYLLAQEEGVCGKFNLTNCCLELDDEGKV---IKEITAK 590
L Q + V+ QNR ALD L A+ G C F CC ++ G V +KEI +
Sbjct: 366 VTLQDQLNSLAAVVLQNRRALDLLTAERGGTC-LFLGEECCYYVNQSGIVTEKVKEIRDR 424
Query: 591 IQKLA 595
IQ+ A
Sbjct: 425 IQRRA 429
>gi|48949851 syncytin precursor [Homo sapiens]
Length = 538
Score = 48.1 bits (113), Expect = 2e-05
Identities = 52/185 (28%), Positives = 72/185 (38%), Gaps = 23/185 (12%)
Query: 414 PSGLYWICGPQAYRQLPAKWSGACVLGTIRPSFFLMPLKQGEALGYPIYDETKRKSKRGI 473
PSG++++CG AYR L C L SF + P+ IY E S
Sbjct: 265 PSGIFFVCGTSAYRCLNGSSESMCFL-----SFLVPPMT--------IYTEQDLYS---Y 308
Query: 474 TIGDWKDNEWPPERIIQYYGPATWAEDGMWGYRTPVYMLNRIIRLQAVLEIITNETAGAL 533
I ++ P + G G+ G T +L L A +L
Sbjct: 309 VISKPRNKRVPILPFVIGAGVLGALGTGIGGITTSTQFY---YKLSQELNGDMERVADSL 365
Query: 534 NLLAQQATKMRNVIYQNRLALDYLLAQEEGVCGKFNLTNCCLELDDEGKV---IKEITAK 590
L Q + V+ QNR ALD L A+ G C F CC ++ G V +KEI +
Sbjct: 366 VTLQDQLNSLAAVVLQNRRALDLLTAERGGTC-LFLGEECCYYVNQSGIVTEKVKEIRDR 424
Query: 591 IQKLA 595
IQ+ A
Sbjct: 425 IQRRA 429
>gi|239753837 PREDICTED: similar to Uncharacterized protein LP9056
[Homo sapiens]
Length = 563
Score = 45.4 bits (106), Expect = 1e-04
Identities = 45/197 (22%), Positives = 81/197 (41%), Gaps = 20/197 (10%)
Query: 415 SGLYWICGPQAYRQLPAKWSGACVLGTIRPS---FFLMPLKQGEALGYPIYDETKRKSKR 471
SGL+++CG Y+ P KWSG C LG + PS + + Q L I+ T + +
Sbjct: 295 SGLFFLCGNGVYKGFPPKWSGRCGLGYLVPSLTRYLTLNASQITNLRSFIHKVTPHRCTQ 354
Query: 472 GITIGDWKDNEWPPERIIQYYGPATWAEDGMWGYRTPVYMLNR-IIRLQAVLEIITNETA 530
G D + PP Y P + Y L + I+ + +E + T
Sbjct: 355 G-------DTDNPP----LYCNPKDNSTIRALFPSLGTYDLEKAILNISKAMEQEFSATK 403
Query: 531 GALNLLAQQATKMRNVIYQNRLALDYLLAQEEGVCGKFNLTNCCLELDDEGKV---IKEI 587
L + + + + ++ + LD Q + CG CCL ++ ++ I+ +
Sbjct: 404 QTLEAHQSKVSSLASASRKDHV-LDIPTTQRQTACGTVG-KQCCLYINYSEEIKSNIQRL 461
Query: 588 TAKIQKLAHIPVQTWKG 604
+ L ++P+ W+G
Sbjct: 462 HEASENLKNVPLLDWQG 478
>gi|239748400 PREDICTED: hypothetical protein XP_002346661 [Homo
sapiens]
Length = 563
Score = 45.4 bits (106), Expect = 1e-04
Identities = 45/197 (22%), Positives = 81/197 (41%), Gaps = 20/197 (10%)
Query: 415 SGLYWICGPQAYRQLPAKWSGACVLGTIRPS---FFLMPLKQGEALGYPIYDETKRKSKR 471
SGL+++CG Y+ P KWSG C LG + PS + + Q L I+ T + +
Sbjct: 295 SGLFFLCGNGVYKGFPPKWSGRCGLGYLVPSLTRYLTLNASQITNLRSFIHKVTPHRCTQ 354
Query: 472 GITIGDWKDNEWPPERIIQYYGPATWAEDGMWGYRTPVYMLNR-IIRLQAVLEIITNETA 530
G D + PP Y P + Y L + I+ + +E + T
Sbjct: 355 G-------DTDNPP----LYCNPKDNSTIRALFPSLGTYDLEKAILNISKAMEQEFSATK 403
Query: 531 GALNLLAQQATKMRNVIYQNRLALDYLLAQEEGVCGKFNLTNCCLELDDEGKV---IKEI 587
L + + + + ++ + LD Q + CG CCL ++ ++ I+ +
Sbjct: 404 QTLEAHQSKVSSLASASRKDHV-LDIPTTQRQTACGTVG-KQCCLYINYSEEIKSNIQRL 461
Query: 588 TAKIQKLAHIPVQTWKG 604
+ L ++P+ W+G
Sbjct: 462 HEASENLKNVPLLDWQG 478
>gi|239742330 PREDICTED: hypothetical protein XP_002342492 [Homo
sapiens]
Length = 563
Score = 45.4 bits (106), Expect = 1e-04
Identities = 45/197 (22%), Positives = 81/197 (41%), Gaps = 20/197 (10%)
Query: 415 SGLYWICGPQAYRQLPAKWSGACVLGTIRPS---FFLMPLKQGEALGYPIYDETKRKSKR 471
SGL+++CG Y+ P KWSG C LG + PS + + Q L I+ T + +
Sbjct: 295 SGLFFLCGNGVYKGFPPKWSGRCGLGYLVPSLTRYLTLNASQITNLRSFIHKVTPHRCTQ 354
Query: 472 GITIGDWKDNEWPPERIIQYYGPATWAEDGMWGYRTPVYMLNR-IIRLQAVLEIITNETA 530
G D + PP Y P + Y L + I+ + +E + T
Sbjct: 355 G-------DTDNPP----LYCNPKDNSTIRALFPSLGTYDLEKAILNISKAMEQEFSATK 403
Query: 531 GALNLLAQQATKMRNVIYQNRLALDYLLAQEEGVCGKFNLTNCCLELDDEGKV---IKEI 587
L + + + + ++ + LD Q + CG CCL ++ ++ I+ +
Sbjct: 404 QTLEAHQSKVSSLASASRKDHV-LDIPTTQRQTACGTVG-KQCCLYINYSEEIKSNIQRL 461
Query: 588 TAKIQKLAHIPVQTWKG 604
+ L ++P+ W+G
Sbjct: 462 HEASENLKNVPLLDWQG 478
>gi|239755070 PREDICTED: similar to proprotein convertase
subtilisin/kexin type 5 [Homo sapiens]
Length = 853
Score = 33.1 bits (74), Expect = 0.76
Identities = 42/156 (26%), Positives = 55/156 (35%), Gaps = 28/156 (17%)
Query: 17 LSMLKGEPWEGCLHCTHTTWSGNIMTKTLLYHTYYECAGTCLGTCTHNQTTYSVCDPGR- 75
L +L+G C+H T T G L C +C TC + T + C G
Sbjct: 146 LQLLRGM----CVHATKTQEEGKFWNDIL--RKLQPCHSSCK-TCNGSATLCTSCPKGAY 198
Query: 76 --GQPYVCYDPKSSPGTWFEIHVGSKEGDLLNQTKVFPSGKDVVSLYFDVCQIVSMGSLF 133
Q V P+ GTW + GS E + SG D+ C+ M
Sbjct: 199 LLAQACVSSCPQ---GTWPSVRSGSCEN--CTEACAICSGADL-------CKKCQMQPGH 246
Query: 134 PVIFSSMEYYSSCHKNRYAHPA----CSTDSPVTTC 165
P+ YS C + YA CS SP TC
Sbjct: 247 PLFLHEGRCYSKCPEGSYAEDGICERCS--SPCRTC 280
>gi|239749596 PREDICTED: hypothetical protein XP_002347099 [Homo
sapiens]
Length = 853
Score = 33.1 bits (74), Expect = 0.76
Identities = 42/156 (26%), Positives = 55/156 (35%), Gaps = 28/156 (17%)
Query: 17 LSMLKGEPWEGCLHCTHTTWSGNIMTKTLLYHTYYECAGTCLGTCTHNQTTYSVCDPGR- 75
L +L+G C+H T T G L C +C TC + T + C G
Sbjct: 146 LQLLRGM----CVHATKTQEEGKFWNDIL--RKLQPCHSSCK-TCNGSATLCTSCPKGAY 198
Query: 76 --GQPYVCYDPKSSPGTWFEIHVGSKEGDLLNQTKVFPSGKDVVSLYFDVCQIVSMGSLF 133
Q V P+ GTW + GS E + SG D+ C+ M
Sbjct: 199 LLAQACVSSCPQ---GTWPSVRSGSCEN--CTEACAICSGADL-------CKKCQMQPGH 246
Query: 134 PVIFSSMEYYSSCHKNRYAHPA----CSTDSPVTTC 165
P+ YS C + YA CS SP TC
Sbjct: 247 PLFLHEGRCYSKCPEGSYAEDGICERCS--SPCRTC 280
>gi|239743863 PREDICTED: hypothetical protein XP_002342982 [Homo
sapiens]
Length = 853
Score = 33.1 bits (74), Expect = 0.76
Identities = 42/156 (26%), Positives = 55/156 (35%), Gaps = 28/156 (17%)
Query: 17 LSMLKGEPWEGCLHCTHTTWSGNIMTKTLLYHTYYECAGTCLGTCTHNQTTYSVCDPGR- 75
L +L+G C+H T T G L C +C TC + T + C G
Sbjct: 146 LQLLRGM----CVHATKTQEEGKFWNDIL--RKLQPCHSSCK-TCNGSATLCTSCPKGAY 198
Query: 76 --GQPYVCYDPKSSPGTWFEIHVGSKEGDLLNQTKVFPSGKDVVSLYFDVCQIVSMGSLF 133
Q V P+ GTW + GS E + SG D+ C+ M
Sbjct: 199 LLAQACVSSCPQ---GTWPSVRSGSCEN--CTEACAICSGADL-------CKKCQMQPGH 246
Query: 134 PVIFSSMEYYSSCHKNRYAHPA----CSTDSPVTTC 165
P+ YS C + YA CS SP TC
Sbjct: 247 PLFLHEGRCYSKCPEGSYAEDGICERCS--SPCRTC 280
>gi|22538457 nuclear receptor coactivator 1 isoform 2 [Homo sapiens]
Length = 1399
Score = 29.6 bits (65), Expect = 8.4
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 266 PEPPPLASNLFAQLAENIASSLHVASCYVCGGM--NMGDQWPWEARELMPQDNFTLTASS 323
P PP +++ F+QLA N +SL + V GM N+G Q+ M Q+ F +
Sbjct: 1177 PGTPPASTSPFSQLAANPEASLANRNSMVSRGMTGNIGGQFGTGINPQMQQNVFQYPGAG 1236
Query: 324 LEP 326
+ P
Sbjct: 1237 MVP 1239
>gi|22538459 nuclear receptor coactivator 1 isoform 3 [Homo sapiens]
Length = 1440
Score = 29.6 bits (65), Expect = 8.4
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 266 PEPPPLASNLFAQLAENIASSLHVASCYVCGGM--NMGDQWPWEARELMPQDNFTLTASS 323
P PP +++ F+QLA N +SL + V GM N+G Q+ M Q+ F +
Sbjct: 1177 PGTPPASTSPFSQLAANPEASLANRNSMVSRGMTGNIGGQFGTGINPQMQQNVFQYPGAG 1236
Query: 324 LEP 326
+ P
Sbjct: 1237 MVP 1239
>gi|22538455 nuclear receptor coactivator 1 isoform 1 [Homo sapiens]
Length = 1441
Score = 29.6 bits (65), Expect = 8.4
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 266 PEPPPLASNLFAQLAENIASSLHVASCYVCGGM--NMGDQWPWEARELMPQDNFTLTASS 323
P PP +++ F+QLA N +SL + V GM N+G Q+ M Q+ F +
Sbjct: 1177 PGTPPASTSPFSQLAANPEASLANRNSMVSRGMTGNIGGQFGTGINPQMQQNVFQYPGAG 1236
Query: 324 LEP 326
+ P
Sbjct: 1237 MVP 1239
>gi|75677365 dynein heavy chain domain 3 [Homo sapiens]
Length = 4427
Score = 29.6 bits (65), Expect = 8.4
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 20/75 (26%)
Query: 254 FESFYEHV--NQKLPEPPPLASNLFAQLAENIASSLHVASCYV----------------- 294
FE H+ ++ + P + +LFA L E + ++LH+ C
Sbjct: 2851 FEEIQSHIIDQARVEQVPESSDSLFAYLIERVQNNLHIVLCLSPMGDPFRNWIRQYPALV 2910
Query: 295 -CGGMNMGDQWPWEA 308
C +N +WP EA
Sbjct: 2911 NCTTINWFSEWPQEA 2925
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,332,640
Number of Sequences: 37866
Number of extensions: 1316717
Number of successful extensions: 2710
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2696
Number of HSP's gapped (non-prelim): 21
length of query: 604
length of database: 18,247,518
effective HSP length: 108
effective length of query: 496
effective length of database: 14,157,990
effective search space: 7022363040
effective search space used: 7022363040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.