Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 145580590
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|145580590 hepatitis C virus F protein-binding protein 2
[Homo sapiens]
(938 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|145580590 hepatitis C virus F protein-binding protein 2 [Homo... 1893 0.0
gi|134254443 pecanex-like 2 [Homo sapiens] 75 4e-13
gi|126723564 pecanex-like 1 [Homo sapiens] 72 2e-12
gi|157743252 pecanex-like 3 [Homo sapiens] 67 6e-11
gi|55750053 atrophin-1 [Homo sapiens] 35 0.43
gi|55750041 atrophin-1 [Homo sapiens] 35 0.43
gi|5453796 neuropeptide Y receptor Y5 [Homo sapiens] 34 0.56
gi|66346693 FAT tumor suppressor 1 precursor [Homo sapiens] 33 1.2
gi|28372497 ubiquitin protein ligase E3 component n-recognin 1 [... 33 1.6
gi|112382257 InaD-like [Homo sapiens] 32 2.1
gi|26638659 mitochondrial ribosomal protein L40 [Homo sapiens] 32 3.6
gi|221316650 ephrin receptor EphA1 [Homo sapiens] 31 4.7
gi|160707905 similar to solute carrier family 35, member E2 [Hom... 31 4.7
>gi|145580590 hepatitis C virus F protein-binding protein 2 [Homo
sapiens]
Length = 938
Score = 1893 bits (4903), Expect = 0.0
Identities = 938/938 (100%), Positives = 938/938 (100%)
Query: 1 MPALEHMNQILHILFVFLPFLWALGTLPPPDALLLWAMEQVLEFGLGGSSMSTHLRLLVM 60
MPALEHMNQILHILFVFLPFLWALGTLPPPDALLLWAMEQVLEFGLGGSSMSTHLRLLVM
Sbjct: 1 MPALEHMNQILHILFVFLPFLWALGTLPPPDALLLWAMEQVLEFGLGGSSMSTHLRLLVM 60
Query: 61 FIMSAGTAIASYFIPSTVGVVLFMTGFGFLLSLNLSDMGHKIGTKSKDLPSGPEKHFSWK 120
FIMSAGTAIASYFIPSTVGVVLFMTGFGFLLSLNLSDMGHKIGTKSKDLPSGPEKHFSWK
Sbjct: 61 FIMSAGTAIASYFIPSTVGVVLFMTGFGFLLSLNLSDMGHKIGTKSKDLPSGPEKHFSWK 120
Query: 121 ECLFYIIILVLALLETSLLHHFAGFSQISKSNSQAIVGYGLMILLIILWILREIQSVYII 180
ECLFYIIILVLALLETSLLHHFAGFSQISKSNSQAIVGYGLMILLIILWILREIQSVYII
Sbjct: 121 ECLFYIIILVLALLETSLLHHFAGFSQISKSNSQAIVGYGLMILLIILWILREIQSVYII 180
Query: 181 GIFRNPFYPKDVQTVTVFFEKQTRLMKIGIVRRILLTLVSPFAMIAFLSLDSSLQGLHSV 240
GIFRNPFYPKDVQTVTVFFEKQTRLMKIGIVRRILLTLVSPFAMIAFLSLDSSLQGLHSV
Sbjct: 181 GIFRNPFYPKDVQTVTVFFEKQTRLMKIGIVRRILLTLVSPFAMIAFLSLDSSLQGLHSV 240
Query: 241 SVCIGFTRAFRMVWQNTENALLETVIVSTVHLISSTDIWWNRSLDTGLRLLLVGIIRDRL 300
SVCIGFTRAFRMVWQNTENALLETVIVSTVHLISSTDIWWNRSLDTGLRLLLVGIIRDRL
Sbjct: 241 SVCIGFTRAFRMVWQNTENALLETVIVSTVHLISSTDIWWNRSLDTGLRLLLVGIIRDRL 300
Query: 301 IQFISKLQFAVTVLLTSWTEKKQRRKTTATLCILNIVFSPFVLVIIVFSTLLSSPLLPLF 360
IQFISKLQFAVTVLLTSWTEKKQRRKTTATLCILNIVFSPFVLVIIVFSTLLSSPLLPLF
Sbjct: 301 IQFISKLQFAVTVLLTSWTEKKQRRKTTATLCILNIVFSPFVLVIIVFSTLLSSPLLPLF 360
Query: 361 TLPVFLVGFPRPIQSWPGAAGTTACVCADTVYYYQMVPRLTAVLQTAMAAGSLGLLLPGS 420
TLPVFLVGFPRPIQSWPGAAGTTACVCADTVYYYQMVPRLTAVLQTAMAAGSLGLLLPGS
Sbjct: 361 TLPVFLVGFPRPIQSWPGAAGTTACVCADTVYYYQMVPRLTAVLQTAMAAGSLGLLLPGS 420
Query: 421 HYLGRFQDRLMWIMILECGYTYCSINIKGLELQETSCHTAEARRVDEVFEDAFEQEYTRV 480
HYLGRFQDRLMWIMILECGYTYCSINIKGLELQETSCHTAEARRVDEVFEDAFEQEYTRV
Sbjct: 421 HYLGRFQDRLMWIMILECGYTYCSINIKGLELQETSCHTAEARRVDEVFEDAFEQEYTRV 480
Query: 481 CSLNEHFGNVLTPCTVLPVKLYSDARNVLSGIIDSHENLKEFKGDLIKVLVWILVQYCSK 540
CSLNEHFGNVLTPCTVLPVKLYSDARNVLSGIIDSHENLKEFKGDLIKVLVWILVQYCSK
Sbjct: 481 CSLNEHFGNVLTPCTVLPVKLYSDARNVLSGIIDSHENLKEFKGDLIKVLVWILVQYCSK 540
Query: 541 RPGMKENVHNTENKGKAPLMLPALNTLPPPKSPEDIDSLNSETFNDWSDDNIFDDEPTIK 600
RPGMKENVHNTENKGKAPLMLPALNTLPPPKSPEDIDSLNSETFNDWSDDNIFDDEPTIK
Sbjct: 541 RPGMKENVHNTENKGKAPLMLPALNTLPPPKSPEDIDSLNSETFNDWSDDNIFDDEPTIK 600
Query: 601 KVIEEKHQLKDLPGTNLFIPGSVESQRVGDHSTGTVPENDLYKAVLLGYPAVDKGKQEDM 660
KVIEEKHQLKDLPGTNLFIPGSVESQRVGDHSTGTVPENDLYKAVLLGYPAVDKGKQEDM
Sbjct: 601 KVIEEKHQLKDLPGTNLFIPGSVESQRVGDHSTGTVPENDLYKAVLLGYPAVDKGKQEDM 660
Query: 661 PYIPLMEFSCSHSHLVCLPAEWRTSCMPSSKMKEMSSLFPEDWYQFVLRQLECYHSEEKA 720
PYIPLMEFSCSHSHLVCLPAEWRTSCMPSSKMKEMSSLFPEDWYQFVLRQLECYHSEEKA
Sbjct: 661 PYIPLMEFSCSHSHLVCLPAEWRTSCMPSSKMKEMSSLFPEDWYQFVLRQLECYHSEEKA 720
Query: 721 SNVLEEIAKDKVLKDFYVHTVMTCYFSLFGIDNMAPSPGHILRVYGGVLPWSVALDWLTE 780
SNVLEEIAKDKVLKDFYVHTVMTCYFSLFGIDNMAPSPGHILRVYGGVLPWSVALDWLTE
Sbjct: 721 SNVLEEIAKDKVLKDFYVHTVMTCYFSLFGIDNMAPSPGHILRVYGGVLPWSVALDWLTE 780
Query: 781 KPELFQLALKAFRYTLKLMIDKASLGPIEDFRELIKYLEEYERDWYIGLVSDEKWKEAIL 840
KPELFQLALKAFRYTLKLMIDKASLGPIEDFRELIKYLEEYERDWYIGLVSDEKWKEAIL
Sbjct: 781 KPELFQLALKAFRYTLKLMIDKASLGPIEDFRELIKYLEEYERDWYIGLVSDEKWKEAIL 840
Query: 841 QEKPYLFSLGYDSNMGIYTGRVLSLQELLIQVGKLNPEAVRGQWANLSWELLYATNDDEE 900
QEKPYLFSLGYDSNMGIYTGRVLSLQELLIQVGKLNPEAVRGQWANLSWELLYATNDDEE
Sbjct: 841 QEKPYLFSLGYDSNMGIYTGRVLSLQELLIQVGKLNPEAVRGQWANLSWELLYATNDDEE 900
Query: 901 RYSIQAHPLLLRNLTVQAAEPPLGYPIYSSKPLHIHLY 938
RYSIQAHPLLLRNLTVQAAEPPLGYPIYSSKPLHIHLY
Sbjct: 901 RYSIQAHPLLLRNLTVQAAEPPLGYPIYSSKPLHIHLY 938
>gi|134254443 pecanex-like 2 [Homo sapiens]
Length = 2137
Score = 74.7 bits (182), Expect = 4e-13
Identities = 51/150 (34%), Positives = 78/150 (52%), Gaps = 3/150 (2%)
Query: 784 LFQLALKAFRYTLKLMIDKASL-GPIEDFRELIKYLEEYERDWYIGLVSDEKWKEAILQE 842
L ++ A R +LKL D+ + ED L + ++ +E+ I D W+ A+L
Sbjct: 1683 LHKVVAPAIRMSLKLHQDQFTCPDEYEDPAVLYEAIQSFEKKVVICHEGDPAWRGAVLSN 1742
Query: 843 KPYLFSLGYDSNMGIYTGRVLSLQE--LLIQVGKLNPEAVRGQWANLSWELLYATNDDEE 900
K L +L + + G +V+ L L +V K+N E VRG WA EL++ N + E
Sbjct: 1743 KEELLTLRHVVDEGADEYKVIMLHRSFLSFKVIKVNKECVRGLWAGQQQELIFLRNRNPE 1802
Query: 901 RYSIQAHPLLLRNLTVQAAEPPLGYPIYSS 930
R SIQ + +LRNL + + PLGYP+Y S
Sbjct: 1803 RGSIQNNKQVLRNLINSSCDQPLGYPMYVS 1832
Score = 40.8 bits (94), Expect = 0.006
Identities = 40/203 (19%), Positives = 75/203 (36%), Gaps = 21/203 (10%)
Query: 288 LRLLLVGIIRDRLIQFISKLQFAVTVLLTSWTEKKQRRKTTATLCILNIVFSPFVLVIIV 347
L +V I+ +L + KLQF +T + A L I S + +
Sbjct: 1268 LDFFMVSILFSKLGDLLHKLQFVLTYVAPWQMAWGSSFHVFAQL--FAIPHSAMLFFQTI 1325
Query: 348 FSTLLSSPLLPLFTLPVFLVGFPRPIQSWPGAAGTTACVCADT----------------- 390
+++ S+PL P +F+ + RP++ W T ++T
Sbjct: 1326 ATSIFSTPLSPFLGSVIFITSYVRPVKFWEKNYNTRRVDNSNTRLAVQIERDPGNDDNNL 1385
Query: 391 --VYYYQMVPRLTAVLQTAMAAGSLGLLLPGSHYLGRFQDRLMWIMILECGYTYCSINIK 448
++Y + L L + G G G ++ D ++ ++E G + ++
Sbjct: 1386 NSIFYEHLTRTLQESLCGDLVLGRWGNYSSGDCFILASDDLNAFVHLIEIGNGLVTFQLR 1445
Query: 449 GLELQETSCHTAEARRVDEVFED 471
GLE + T C E + E E+
Sbjct: 1446 GLEFRGTYCQQREVEAIMEGDEE 1468
>gi|126723564 pecanex-like 1 [Homo sapiens]
Length = 2341
Score = 72.4 bits (176), Expect = 2e-12
Identities = 50/163 (30%), Positives = 81/163 (49%), Gaps = 4/163 (2%)
Query: 772 SVALDWLTEKPELFQ-LALKAFRYTLKLMIDK-ASLGPIEDFRELIKYLEEYERDWYIGL 829
S+ +W+ EL + + + R ++KL D S +D L + + +E++ I
Sbjct: 1834 SIRDEWIFADMELLRKVVVPGIRMSIKLHQDHFTSPDEYDDPTVLYEAIVSHEKNLVIAH 1893
Query: 830 VSDEKWKEAILQEKPYLFSLGY--DSNMGIYTGRVLSLQELLIQVGKLNPEAVRGQWANL 887
D W+ A+L P L +L + D Y +L+ + L +V K+N E VRG WA
Sbjct: 1894 EGDPAWRSAVLANSPSLLALRHVMDDGTNEYKIIMLNRRYLSFRVIKVNKECVRGLWAGQ 1953
Query: 888 SWELLYATNDDEERYSIQAHPLLLRNLTVQAAEPPLGYPIYSS 930
EL++ N + ER SIQ LRN+ + + P+GYPI+ S
Sbjct: 1954 QQELVFLRNRNPERGSIQNAKQALRNMINSSCDQPIGYPIFVS 1996
Score = 36.2 bits (82), Expect = 0.15
Identities = 39/206 (18%), Positives = 73/206 (35%), Gaps = 27/206 (13%)
Query: 288 LRLLLVGIIRDRLIQFISKLQFAVTVLLT---SWTEKKQRRKTTATLCILNIVFSPFVLV 344
L L + I+ ++L + + KLQF T + +W A + S + +
Sbjct: 1435 LDLFFMSILFNKLWELLYKLQFVYTYIAPWQITWGSAFH-----AFAQPFAVPHSAMLFI 1489
Query: 345 IIVFSTLLSSPLLPLFTLPVFLVGFPRPIQSWPGAAGTTACVCADT-------------- 390
S S+PL P +F+ + RP++ W T ++T
Sbjct: 1490 QAAVSAFFSTPLNPFLGSAIFITSYVRPVKFWERDYNTKRVDHSNTRLASQLDRNPGSDD 1549
Query: 391 -----VYYYQMVPRLTAVLQTAMAAGSLGLLLPGSHYLGRFQDRLMWIMILECGYTYCSI 445
++Y + L L + G G G ++ + ++E G +
Sbjct: 1550 NNLNSIFYEHLTRSLQHSLCGDLLLGRWGNYSTGDCFILASDYLNALVHLIEIGNGLVTF 1609
Query: 446 NIKGLELQETSCHTAEARRVDEVFED 471
++GLE + T C E + E E+
Sbjct: 1610 QLRGLEFRGTYCQQREVEAITEGVEE 1635
>gi|157743252 pecanex-like 3 [Homo sapiens]
Length = 2034
Score = 67.4 bits (163), Expect = 6e-11
Identities = 51/150 (34%), Positives = 69/150 (46%), Gaps = 3/150 (2%)
Query: 784 LFQLALKAFRYTLKLMIDK-ASLGPIEDFRELIKYLEEYERDWYIGLVSDEKWKEAILQE 842
L ++ R LKL D S E+ L + E I D W+ AIL
Sbjct: 1635 LHRVVAPGVRMALKLHQDHFTSPDEYEEPAALYDAIAANEERLVISHEGDPAWRSAILSN 1694
Query: 843 KPYLFSLGY--DSNMGIYTGRVLSLQELLIQVGKLNPEAVRGQWANLSWELLYATNDDEE 900
P L +L + D Y +L+ + L +V K+N E VRG WA EL++ N + E
Sbjct: 1695 TPSLLALRHVLDDASDEYKIIMLNRRHLSFRVIKVNRECVRGLWAGQQQELVFLRNRNPE 1754
Query: 901 RYSIQAHPLLLRNLTVQAAEPPLGYPIYSS 930
R SIQ LRN+ + + PLGYPIY S
Sbjct: 1755 RGSIQNAKQALRNMINSSCDQPLGYPIYVS 1784
Score = 45.1 bits (105), Expect = 3e-04
Identities = 49/236 (20%), Positives = 85/236 (36%), Gaps = 33/236 (13%)
Query: 339 SPFVLVIIVFSTLLSSPLLPLFTLPVFLVGFPRPIQSW---------------------- 376
S + V + S L S+PL PL VF++ + RP++ W
Sbjct: 1272 SAMLFVQALLSGLFSTPLNPLLGSAVFIMSYARPLKFWERDYNTKRVDHSNTRLVTQLDR 1331
Query: 377 -PGAAGTTACVCADTVYYYQMVPRLTAVLQTAMAAGSLGLLLPGSHYLGRFQDRLMWIMI 435
PGA ++++Y + L L + G G PG ++ + +
Sbjct: 1332 NPGADDNN----LNSIFYEHLTRSLQHTLCGDLVLGRWGNYGPGDCFVLASDYLNALVHL 1387
Query: 436 LECGYTYCSINIKGLELQETSCHTAEARRVDEVFED------AFEQEYTRVCSLNEHFGN 489
+E G + ++GLE + T C E + E E+ RV S N FG
Sbjct: 1388 IEVGNGLVTFQLRGLEFRGTYCQQREVEAITEGVEEDEGCCCCEPGHLPRVLSFNAAFGQ 1447
Query: 490 VLTPCTVLPVKLYSDARNVLSGIIDSHENLKEFKGDLIKVLVWILVQYCSKRPGMK 545
V K + ++ S + + + LI V ++ Y S+ P ++
Sbjct: 1448 RWLAWEVTASKYVLEGYSISDNNAASMLQVFDLRKILITYYVKSIIYYVSRSPKLE 1503
Score = 31.6 bits (70), Expect = 3.6
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 19 PFLWALGTLPPPDALLLWAMEQVLEFGLGGSSMSTHLRLLVMFIMSAGTAIASYFIPSTV 78
PF++ LG LP + L++ +EQ+ G GG++ ++ L +F +S A+ +
Sbjct: 912 PFVFLLGLLPQVNTCLMYLLEQIDMHGFGGTAATS--PLTAVFSLSRSLLAAALLYGFCL 969
Query: 79 GVV 81
G +
Sbjct: 970 GAI 972
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 34.7 bits (78), Expect = 0.43
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 14/95 (14%)
Query: 541 RPGMKENVHNTENKG-KAPLMLPALNTLPPPKSPEDIDSLNSETFNDWSDDNIFDDEPTI 599
+ G E + +E++ AP LP P+SP D+DSL+ + N DD +
Sbjct: 69 KQGRSEEISESESEETNAPKKTKTEQELPRPQSPSDLDSLDGRSLN--------DDGSSD 120
Query: 600 KKVIEEKHQLKDLPGTNLFIPGSVESQRVGDHSTG 634
+ I++ ++ +++ PGSVE+ D S+G
Sbjct: 121 PRDIDQDNR---STSPSIYSPGSVEND--SDSSSG 150
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 34.7 bits (78), Expect = 0.43
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 14/95 (14%)
Query: 541 RPGMKENVHNTENKG-KAPLMLPALNTLPPPKSPEDIDSLNSETFNDWSDDNIFDDEPTI 599
+ G E + +E++ AP LP P+SP D+DSL+ + N DD +
Sbjct: 69 KQGRSEEISESESEETNAPKKTKTEQELPRPQSPSDLDSLDGRSLN--------DDGSSD 120
Query: 600 KKVIEEKHQLKDLPGTNLFIPGSVESQRVGDHSTG 634
+ I++ ++ +++ PGSVE+ D S+G
Sbjct: 121 PRDIDQDNR---STSPSIYSPGSVEND--SDSSSG 150
>gi|5453796 neuropeptide Y receptor Y5 [Homo sapiens]
Length = 445
Score = 34.3 bits (77), Expect = 0.56
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 274 SSTDIW--WNRSLDTGLRLLLVGIIRDRLIQFISKLQFAVTVLLTSWTEKKQRRKTTATL 331
S +W + S+D L+ L+G L F+S L F +L+ KK+ +KTT
Sbjct: 25 SDFPVWDDYKSSVDD-LQYFLIG-----LYTFVSLLGFMGNLLILMALMKKRNQKTTVNF 78
Query: 332 CILNIVFSPFVLVIIVFSTLLSSPLL 357
I N+ FS ++V+ L+S LL
Sbjct: 79 LIGNLAFSDILVVLFCSPFTLTSVLL 104
>gi|66346693 FAT tumor suppressor 1 precursor [Homo sapiens]
Length = 4588
Score = 33.1 bits (74), Expect = 1.2
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 546 ENVHNTENKGKAPLMLPALNTLPPPKSPEDIDSLNSETFNDWSDDNIFDDEPTI-KKVIE 604
E+VH + P L PP SP D DS+ +++ D + D +P + KK +E
Sbjct: 4290 ESVHGHRKAVAVCSVAPNLPPPPPSNSPSDSDSIQKPSWDFDYDTKVVDLDPCLSKKPLE 4349
Query: 605 EK 606
EK
Sbjct: 4350 EK 4351
>gi|28372497 ubiquitin protein ligase E3 component n-recognin 1
[Homo sapiens]
Length = 1749
Score = 32.7 bits (73), Expect = 1.6
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 10/115 (8%)
Query: 99 GHKIGTKS----KDLPSGPEKHFSWKECLFYIIILVLALLETSLLHHFAGFSQISKSNSQ 154
GH + TKS +DL S H L + + + L S LH F F +
Sbjct: 590 GHSLETKSYRVSEDLVS---IHLPLSRTLAGLHVRLSRLGAVSRLHEFVSFEDFQV---E 643
Query: 155 AIVGYGLMILLIILWILREIQSVYIIGIFRNPFYPKDVQTVTVFFEKQTRLMKIG 209
+V Y L L+++ ++ E+ + + FY +DV+ ++K +++IG
Sbjct: 644 VLVEYPLRCLVLVAQVVAEMWRRNGLSLISQVFYYQDVKCREEMYDKDIIMLQIG 698
>gi|112382257 InaD-like [Homo sapiens]
Length = 1801
Score = 32.3 bits (72), Expect = 2.1
Identities = 36/127 (28%), Positives = 47/127 (37%), Gaps = 25/127 (19%)
Query: 531 VWILVQYCSKRPGMKENVHNTENK-----------------GKAPLMLPALNTLPPPKSP 573
V +VQ S P + NVHN NK G AP P + PP K+
Sbjct: 1152 VVFIVQSLSSTPRVIPNVHNKANKITGNQNQDTQEKKEKRQGTAP---PPMKLPPPYKAL 1208
Query: 574 EDIDSLNSE--TFNDWSDDNIFDDEPTIKKVIEEKHQLKDLPGTNLFIPGSVESQRVGDH 631
D N E F D + D P +IE + KD G L + G+ + R+
Sbjct: 1209 TDDSDENEEEDAFTDQKIRQRYADLPGELHIIELE---KDKNGLGLSLAGNKDRSRMSIF 1265
Query: 632 STGTVPE 638
G PE
Sbjct: 1266 VVGINPE 1272
>gi|26638659 mitochondrial ribosomal protein L40 [Homo sapiens]
Length = 206
Score = 31.6 bits (70), Expect = 3.6
Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 800 IDKAS--LGPIEDFRELIKYLEEYERDWYIGLVSDEKWKEAILQEKPYLF-----SLGYD 852
++KA+ L PIEDF +K+L++ + L +E + A+L +K L+ + D
Sbjct: 75 LEKATQELIPIEDFITPLKFLDKARERPQVELTFEETERRALLLKKWSLYKQQERKMERD 134
Query: 853 SNMGIYTGRVLSLQELLIQVGKLNPEAVR 881
+ + + +L+EL ++ KL+ EA++
Sbjct: 135 TIRAMLEAQQEALEELQLESPKLHAEAIK 163
>gi|221316650 ephrin receptor EphA1 [Homo sapiens]
Length = 976
Score = 31.2 bits (69), Expect = 4.7
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 853 SNMGIYTGRVLSLQELLIQVGKLNPEAVRGQWA---------NLSWELLYATNDDEERYS 903
+++ I G SL L +++ K P + WA NL++EL + N DEERY
Sbjct: 436 TSVSISMGHAESLSGLSLRLVKKEPRQLELTWAGSRPRSPGANLTYEL-HVLNQDEERYQ 494
Query: 904 IQAHPLLL 911
+ P +L
Sbjct: 495 MVLEPRVL 502
>gi|160707905 similar to solute carrier family 35, member E2 [Homo
sapiens]
Length = 405
Score = 31.2 bits (69), Expect = 4.7
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 86 GFGFLLSLNLSDMGHKIGTKSKDLPSGPEKHFSWKECLFYIIILVLALLETSLLHHFAGF 145
GF LS N+ D + SK L SG + FS E FY +A+L + + F
Sbjct: 224 GFSAALSTNIMDCLQNVF--SKKLLSGDKYRFSAPELQFYTSAAAVAMLVPARV-FFTDV 280
Query: 146 SQISKSNSQAIVGYGLMILLIILWILREIQSV 177
I +S +++LL+ +L +QSV
Sbjct: 281 PVIGRSGKSFSYNQDVVLLLLTDGVLFHLQSV 312
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.139 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,433,111
Number of Sequences: 37866
Number of extensions: 1644793
Number of successful extensions: 3829
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3809
Number of HSP's gapped (non-prelim): 20
length of query: 938
length of database: 18,247,518
effective HSP length: 112
effective length of query: 826
effective length of database: 14,006,526
effective search space: 11569390476
effective search space used: 11569390476
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.