Search of human proteins with 109627656

Search of human proteins with 109627656

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|109627656 short long palate, lung and nasal epithelium
carcinoma associated 3 isoform 2 [Homo sapiens]
         (218 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|109627656 short long palate, lung and nasal epithelium carcin...   445   e-125
gi|109627654 short long palate, lung and nasal epithelium carcin...   424   e-119
gi|7706119 palate, lung and nasal epithelium associated precurso...    60   2e-09
gi|18765705 palate, lung and nasal epithelium associated precurs...    60   2e-09
gi|45592961 chromosome 20 open reading frame 70 [Homo sapiens]         43   2e-04
gi|223278377 antimicrobial peptide RY2G5 [Homo sapiens]                34   0.084
gi|28372551 bactericidal/permeability-increasing protein-like 2 ...    29   3.5  
gi|7657069 ERO1-like [Homo sapiens]                                    29   3.5  
gi|239755945 PREDICTED: hypothetical protein [Homo sapiens]            28   4.6  
gi|239750458 PREDICTED: hypothetical protein [Homo sapiens]            28   4.6  
gi|5032243 makorin ring finger protein 3 [Homo sapiens]                28   4.6  
gi|155969697 keratin 6C [Homo sapiens]                                 28   6.0  
gi|5031839 keratin 6A [Homo sapiens]                                   28   6.0  
gi|119703753 keratin 6B [Homo sapiens]                                 28   6.0  
gi|149192843 hypothetical protein LOC54627 [Homo sapiens]              28   7.9  

>gi|109627656 short long palate, lung and nasal epithelium carcinoma
           associated 3 isoform 2 [Homo sapiens]
          Length = 218

 Score =  445 bits (1144), Expect = e-125
 Identities = 218/218 (100%), Positives = 218/218 (100%)

Query: 1   MMCPLWRLLIFLGLLALPLAPHKQPWPGLAQAHRDNKSTLARIIAQGLIKHNAESRIQNI 60
           MMCPLWRLLIFLGLLALPLAPHKQPWPGLAQAHRDNKSTLARIIAQGLIKHNAESRIQNI
Sbjct: 1   MMCPLWRLLIFLGLLALPLAPHKQPWPGLAQAHRDNKSTLARIIAQGLIKHNAESRIQNI 60

Query: 61  HFGDRLNASAQVAPGLVGWLISGRKHQQQQESRSFDNNIVKMCAHMSIVVEFWLEKDEFG 120
           HFGDRLNASAQVAPGLVGWLISGRKHQQQQESRSFDNNIVKMCAHMSIVVEFWLEKDEFG
Sbjct: 61  HFGDRLNASAQVAPGLVGWLISGRKHQQQQESRSFDNNIVKMCAHMSIVVEFWLEKDEFG 120

Query: 121 RRDLVIGKCDAEPSSVHVAILTEAIPPKMNQFLYNLKENLQKVLPHMVESQVCPLIGEIL 180
           RRDLVIGKCDAEPSSVHVAILTEAIPPKMNQFLYNLKENLQKVLPHMVESQVCPLIGEIL
Sbjct: 121 RRDLVIGKCDAEPSSVHVAILTEAIPPKMNQFLYNLKENLQKVLPHMVESQVCPLIGEIL 180

Query: 181 GQLDVKLLKSLIEQEAAHEPTHHETSQPSACQAGESPS 218
           GQLDVKLLKSLIEQEAAHEPTHHETSQPSACQAGESPS
Sbjct: 181 GQLDVKLLKSLIEQEAAHEPTHHETSQPSACQAGESPS 218


>gi|109627654 short long palate, lung and nasal epithelium carcinoma
           associated 3 isoform 1 [Homo sapiens]
          Length = 254

 Score =  424 bits (1091), Expect = e-119
 Identities = 217/254 (85%), Positives = 217/254 (85%), Gaps = 36/254 (14%)

Query: 1   MMCPLWRLLIFLGLLALPLAPHKQPWPGLAQAHRDNKSTLARIIAQGLIKHNAESRIQNI 60
           MMCPLWRLLIFLGLLALPLAPHKQPWPGLAQAHRDNKSTLARIIAQGLIKHNAESRIQNI
Sbjct: 1   MMCPLWRLLIFLGLLALPLAPHKQPWPGLAQAHRDNKSTLARIIAQGLIKHNAESRIQNI 60

Query: 61  HFGDRLNASAQVAPGLVGWLISGRKHQQQQESR--------------------------- 93
           HFGDRLNASAQVAPGLVGWLISGRKHQQQQES                            
Sbjct: 61  HFGDRLNASAQVAPGLVGWLISGRKHQQQQESSINITNIQLDCGGIQISFHKEWFSANIS 120

Query: 94  ---------SFDNNIVKMCAHMSIVVEFWLEKDEFGRRDLVIGKCDAEPSSVHVAILTEA 144
                    SFDNNIVKMCAHMSIVVEFWLEKDEFGRRDLVIGKCDAEPSSVHVAILTEA
Sbjct: 121 LEFDLELRPSFDNNIVKMCAHMSIVVEFWLEKDEFGRRDLVIGKCDAEPSSVHVAILTEA 180

Query: 145 IPPKMNQFLYNLKENLQKVLPHMVESQVCPLIGEILGQLDVKLLKSLIEQEAAHEPTHHE 204
           IPPKMNQFLYNLKENLQKVLPHMVESQVCPLIGEILGQLDVKLLKSLIEQEAAHEPTHHE
Sbjct: 181 IPPKMNQFLYNLKENLQKVLPHMVESQVCPLIGEILGQLDVKLLKSLIEQEAAHEPTHHE 240

Query: 205 TSQPSACQAGESPS 218
           TSQPSACQAGESPS
Sbjct: 241 TSQPSACQAGESPS 254


>gi|7706119 palate, lung and nasal epithelium associated precursor
           [Homo sapiens]
          Length = 256

 Score = 59.7 bits (143), Expect = 2e-09
 Identities = 29/95 (30%), Positives = 52/95 (54%)

Query: 98  NIVKMCAHMSIVVEFWLEKDEFGRRDLVIGKCDAEPSSVHVAILTEAIPPKMNQFLYNLK 157
           +++++   + I  E    +D+  R  LV+G C   P S+ +++L    P  +   L +L 
Sbjct: 149 SLLRLAVKLDITAEILAVRDKQERIHLVLGDCTHSPGSLQISLLDGLGPLPIQGLLDSLT 208

Query: 158 ENLQKVLPHMVESQVCPLIGEILGQLDVKLLKSLI 192
             L KVLP +V+  VCPL+ E+L  LD+ L+  ++
Sbjct: 209 GILNKVLPELVQGNVCPLVNEVLRGLDITLVHDIV 243


>gi|18765705 palate, lung and nasal epithelium associated precursor
           [Homo sapiens]
          Length = 256

 Score = 59.7 bits (143), Expect = 2e-09
 Identities = 29/95 (30%), Positives = 52/95 (54%)

Query: 98  NIVKMCAHMSIVVEFWLEKDEFGRRDLVIGKCDAEPSSVHVAILTEAIPPKMNQFLYNLK 157
           +++++   + I  E    +D+  R  LV+G C   P S+ +++L    P  +   L +L 
Sbjct: 149 SLLRLAVKLDITAEILAVRDKQERIHLVLGDCTHSPGSLQISLLDGLGPLPIQGLLDSLT 208

Query: 158 ENLQKVLPHMVESQVCPLIGEILGQLDVKLLKSLI 192
             L KVLP +V+  VCPL+ E+L  LD+ L+  ++
Sbjct: 209 GILNKVLPELVQGNVCPLVNEVLRGLDITLVHDIV 243


>gi|45592961 chromosome 20 open reading frame 70 [Homo sapiens]
          Length = 249

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 20/96 (20%), Positives = 57/96 (59%), Gaps = 2/96 (2%)

Query: 99  IVKMCAHMSIVVEFWLEKDEFGRRDL-VIGKCDAEPSSVHVAILTEAIPPKMNQFLYNLK 157
           I+ + A + ++    +E D    + + V+G+C ++P+S+ +++L +     +N+F+ ++ 
Sbjct: 143 IINLKASLDLLTAVTIETDPQTHQPVAVLGECASDPTSISLSLLDKH-SQIINKFVNSVI 201

Query: 158 ENLQKVLPHMVESQVCPLIGEILGQLDVKLLKSLIE 193
             L+  +  +++ ++CPLI   +  LDV +++ +++
Sbjct: 202 NTLKSTVSSLLQKEICPLIRIFIHSLDVNVIQQVVD 237


>gi|223278377 antimicrobial peptide RY2G5 [Homo sapiens]
          Length = 614

 Score = 34.3 bits (77), Expect = 0.084
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 9/87 (10%)

Query: 102 MCAHMSIVVEFWLEKDEFGRRDLVIGKCDAEPSSVHVAILTEAIPPKMNQFLYNLKENL- 160
           +   ++I  +  L  D  G   LVI +CD     + V +L   +P        NL +NL 
Sbjct: 268 IAVEVNITAKVRLTMDRTGYPRLVIERCDTLLGGIKVKLLRGLLP--------NLVDNLV 319

Query: 161 QKVLPHMVESQVCPLIGEILGQLDVKL 187
            +VL  ++   +CP++  +LG ++ +L
Sbjct: 320 NRVLADVLPDLLCPIVDVVLGLVNDQL 346


>gi|28372551 bactericidal/permeability-increasing protein-like 2
           [Homo sapiens]
          Length = 507

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 7/75 (9%)

Query: 114 LEKDEFGRRDLVIGKCDAEPSSVHVAILTEAIPPKMNQFLYN-LKENLQKVLPHMVESQV 172
           L +++FG   L +  C A+ S  HV+   E         LYN   E ++K +   +   +
Sbjct: 146 LTRNDFGHPTLKLQDCYAQLSHAHVSFSGEL------SVLYNSFAEPMEKPILKNLNEML 199

Query: 173 CPLIGEILGQLDVKL 187
           CP+I   +  L+  L
Sbjct: 200 CPIIASEVKALNANL 214


>gi|7657069 ERO1-like [Homo sapiens]
          Length = 468

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 20/107 (18%)

Query: 112 FWLEKDEFGRRDLVIGKCDAEPSSVHVAILTEAIPPKMNQFLYNLKENLQKVLPHMVESQ 171
           FW +  + GRRD  +  C            ++ +P  +    Y   E    ++    ++ 
Sbjct: 87  FWNDISQCGRRDCAVKPCQ-----------SDEVPDGIKSASYKYSEEANNLIEECEQA- 134

Query: 172 VCPLIGEILGQLDVKLLKSLIEQEAAHEPTHHETSQPSACQAGESPS 218
                 E LG +D  L +    Q+A  + T H+ S  + C+A +  S
Sbjct: 135 ------ERLGAVDESLSEE--TQKAVLQWTKHDDSSDNFCEADDIQS 173


>gi|239755945 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 151

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 12/64 (18%)

Query: 21  PHKQPWPGLAQAHRDNKST---------LARIIAQGLIKHNAESRIQNIHF---GDRLNA 68
           PH+ P PGLA       S          L+++ A G   H+ +SR + IH     D +N 
Sbjct: 59  PHRSPTPGLASLRGPPHSQWEPPSRAWGLSQLPANGQQAHDDDSRAELIHAFLDDDAING 118

Query: 69  SAQV 72
           +A+V
Sbjct: 119 AARV 122


>gi|239750458 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 151

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 12/64 (18%)

Query: 21  PHKQPWPGLAQAHRDNKST---------LARIIAQGLIKHNAESRIQNIHF---GDRLNA 68
           PH+ P PGLA       S          L+++ A G   H+ +SR + IH     D +N 
Sbjct: 59  PHRSPTPGLASLRGPPHSQWEPPSRAWGLSQLPANGQQAHDDDSRAELIHAFLDDDAING 118

Query: 69  SAQV 72
           +A+V
Sbjct: 119 AARV 122


>gi|5032243 makorin ring finger protein 3 [Homo sapiens]
          Length = 507

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 6/35 (17%)

Query: 90  QESRSFDNNIVKMC------AHMSIVVEFWLEKDE 118
           + +R F+N IVK C      + + I  EFW+E++E
Sbjct: 348 RSARQFENRIVKSCPQCRVTSELVIPSEFWVEEEE 382


>gi|155969697 keratin 6C [Homo sapiens]
          Length = 564

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 4/106 (3%)

Query: 90  QESRSFDNNIVKMCAHMSIVVEFWLEKDEFGRRDLVIGKCDAEPSSVHVAILTEAIPPKM 149
           Q  RS  +++ K CA +   +    ++ E   +D    K +    ++  A    A   K 
Sbjct: 389 QRLRSEIDHVKKQCASLQAAIADAEQRGEMALKDAK-NKLEGLEDALQKAKQDLARLLKE 447

Query: 150 NQFLYNLKENLQKVLP---HMVESQVCPLIGEILGQLDVKLLKSLI 192
            Q L N+K  L   +     ++E + C L GE +GQ++V +++S I
Sbjct: 448 YQELMNVKLALDVEIATYRKLLEGEECRLNGEGVGQVNVSVVQSTI 493


>gi|5031839 keratin 6A [Homo sapiens]
          Length = 564

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 4/106 (3%)

Query: 90  QESRSFDNNIVKMCAHMSIVVEFWLEKDEFGRRDLVIGKCDAEPSSVHVAILTEAIPPKM 149
           Q  RS  +++ K CA++   +    ++ E   +D    K +    ++  A    A   K 
Sbjct: 389 QRLRSEIDHVKKQCANLQAAIADAEQRGEMALKDAK-NKLEGLEDALQKAKQDLARLLKE 447

Query: 150 NQFLYNLKENLQKVLP---HMVESQVCPLIGEILGQLDVKLLKSLI 192
            Q L N+K  L   +     ++E + C L GE +GQ+++ +++S +
Sbjct: 448 YQELMNVKLALDVEIATYRKLLEGEECRLNGEGVGQVNISVVQSTV 493


>gi|119703753 keratin 6B [Homo sapiens]
          Length = 564

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 4/106 (3%)

Query: 90  QESRSFDNNIVKMCAHMSIVVEFWLEKDEFGRRDLVIGKCDAEPSSVHVAILTEAIPPKM 149
           Q  RS  +++ K CA++   +    ++ E   +D    K +    ++  A    A   K 
Sbjct: 389 QRLRSEIDHVKKQCANLQAAIADAEQRGEMALKDAK-NKLEGLEDALQKAKQDLARLLKE 447

Query: 150 NQFLYNLKENLQKVLP---HMVESQVCPLIGEILGQLDVKLLKSLI 192
            Q L N+K  L   +     ++E + C L GE +GQ+++ +++S +
Sbjct: 448 YQELMNVKLALDVEIATYRKLLEGEECRLNGEGVGQVNISVVQSTV 493


>gi|149192843 hypothetical protein LOC54627 [Homo sapiens]
          Length = 1047

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 7/48 (14%)

Query: 2   MCPL--WRLLIFLGLLALPL----APHKQPWPGLAQAHRDNKSTLARI 43
           +CP   +RLL F  LL  P     AP  +PWPG+ +  R  KS L R+
Sbjct: 195 LCPAVAFRLLDFPTLLVYPPDGPGAPAAEPWPGVIRFGR-GKSCLFRL 241


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.134    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,551,004
Number of Sequences: 37866
Number of extensions: 340487
Number of successful extensions: 943
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 933
Number of HSP's gapped (non-prelim): 18
length of query: 218
length of database: 18,247,518
effective HSP length: 98
effective length of query: 120
effective length of database: 14,536,650
effective search space: 1744398000
effective search space used: 1744398000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.