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Search of human proteins with 14270496
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14270496 protocadherin gamma subfamily B, 3 isoform 2
precursor [Homo sapiens]
(814 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14270496 protocadherin gamma subfamily B, 3 isoform 2 precurs... 1615 0.0
gi|11128033 protocadherin gamma subfamily B, 3 isoform 1 precurs... 1596 0.0
gi|14270493 protocadherin gamma subfamily B, 2 isoform 2 precurs... 1047 0.0
gi|11128035 protocadherin gamma subfamily B, 2 isoform 1 precurs... 1044 0.0
gi|14270505 protocadherin gamma subfamily B, 5 isoform 2 precurs... 1040 0.0
gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precurs... 1039 0.0
gi|14270499 protocadherin gamma subfamily B, 4 isoform 2 precurs... 1038 0.0
gi|13470082 protocadherin gamma subfamily B, 4 isoform 1 precurs... 1038 0.0
gi|14270490 protocadherin gamma subfamily B, 1 isoform 2 precurs... 1030 0.0
gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precurs... 1028 0.0
gi|14270502 protocadherin gamma subfamily B, 6 isoform 2 precurs... 984 0.0
gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precurs... 983 0.0
gi|14270508 protocadherin gamma subfamily B, 7 isoform 2 precurs... 978 0.0
gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precurs... 975 0.0
gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precurs... 679 0.0
gi|14196457 protocadherin gamma subfamily A, 12 isoform 2 precur... 679 0.0
gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precurs... 667 0.0
gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precurs... 666 0.0
gi|14196474 protocadherin gamma subfamily A, 6 isoform 2 precurs... 666 0.0
gi|14196459 protocadherin gamma subfamily A, 1 isoform 2 precurs... 666 0.0
gi|14196451 protocadherin gamma subfamily A, 11 isoform 2 precur... 663 0.0
gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precur... 663 0.0
gi|14270487 protocadherin gamma subfamily A, 9 isoform 2 precurs... 660 0.0
gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precurs... 660 0.0
gi|14196468 protocadherin gamma subfamily A, 4 isoform 2 precurs... 658 0.0
gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precurs... 658 0.0
gi|14196471 protocadherin gamma subfamily A, 5 isoform 2 precurs... 657 0.0
gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precurs... 657 0.0
gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precurs... 656 0.0
gi|14196465 protocadherin gamma subfamily A, 3 isoform 2 precurs... 656 0.0
>gi|14270496 protocadherin gamma subfamily B, 3 isoform 2 precursor
[Homo sapiens]
Length = 814
Score = 1615 bits (4182), Expect = 0.0
Identities = 814/814 (100%), Positives = 814/814 (100%)
Query: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD
Sbjct: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
Query: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT
Sbjct: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
Query: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL
Sbjct: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
Query: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP
Sbjct: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
Query: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE
Sbjct: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
Query: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA
Sbjct: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
Query: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV
Sbjct: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
Query: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD
Sbjct: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
Query: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP
Sbjct: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
Query: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY
Sbjct: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
Query: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML
Sbjct: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
Query: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR
Sbjct: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
Query: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL
Sbjct: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
Query: 781 LCDEASWFESNDNPEMPSNSGNLQKVSFFKPFLP 814
LCDEASWFESNDNPEMPSNSGNLQKVSFFKPFLP
Sbjct: 781 LCDEASWFESNDNPEMPSNSGNLQKVSFFKPFLP 814
>gi|11128033 protocadherin gamma subfamily B, 3 isoform 1 precursor
[Homo sapiens]
Length = 929
Score = 1596 bits (4133), Expect = 0.0
Identities = 805/805 (100%), Positives = 805/805 (100%)
Query: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD
Sbjct: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
Query: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT
Sbjct: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
Query: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL
Sbjct: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
Query: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP
Sbjct: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
Query: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE
Sbjct: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
Query: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA
Sbjct: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
Query: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV
Sbjct: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
Query: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD
Sbjct: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
Query: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP
Sbjct: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
Query: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY
Sbjct: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
Query: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML
Sbjct: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
Query: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR
Sbjct: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
Query: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL
Sbjct: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
Query: 781 LCDEASWFESNDNPEMPSNSGNLQK 805
LCDEASWFESNDNPEMPSNSGNLQK
Sbjct: 781 LCDEASWFESNDNPEMPSNSGNLQK 805
>gi|14270493 protocadherin gamma subfamily B, 2 isoform 2 precursor
[Homo sapiens]
Length = 811
Score = 1047 bits (2708), Expect = 0.0
Identities = 545/811 (67%), Positives = 630/811 (77%), Gaps = 4/811 (0%)
Query: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
M SSG G ++L FLLSL L IRY+IPEEL + S+VGNLAKDLG V D
Sbjct: 1 MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60
Query: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
LP R LRV AEK++FTV+PE+G+LLVSDRIDRE+ICGK+ CVL+F+ VAE PLN F++
Sbjct: 61 LPARKLRVSAEKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA 120
Query: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
V++QDINDN P F Q L+I E G TF L+ A D DVG NSLQ+Y+L+ + +F L
Sbjct: 121 VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL 180
Query: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
+K+ DG +YPEL+LK LDREE H LVLTAVDGG+P +S TTQIR+ V DANDNPP
Sbjct: 181 AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP 240
Query: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
VF+QD+YRV + E++P G VL+V A D DEGINAEI Y+F N+ ++V+ F L+ KTGE
Sbjct: 241 VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE 300
Query: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
+TT +LDFE SYT+ +EAKD G A+C +Q++I D+ND APE+ + S S + ED+
Sbjct: 301 ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS 360
Query: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
GT +ALIKT D DSG NGE+ CQ+ GN F + +KN Y+LVTDGALDRE+IPEYN+
Sbjct: 361 PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL 420
Query: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
TITATD G PPLSSS +TLHI DVNDN PVF Q SY VHVAENNPPGASIA + ASDPD
Sbjct: 421 TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD 480
Query: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
LGP+G VSY IVASDL+PRE+ SYVSVSA+SGVVFAQRAFDHEQLRAFELTLQARDQGSP
Sbjct: 481 LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
Query: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
LSANVSLRVLV D NDNAP VLYPALGP+GSALFDMVPR+AEPGYLVTKVVAVDADSG+
Sbjct: 541 ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 600
Query: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
NAWLSYH++QASEPGLFSLGLRTGEVRTAR LGDR+AARQRLLV VRDGGQ PLSAT L
Sbjct: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
Query: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
HLIFADSLQE+ PDLSDR PSDPQA+LQF+LVVALALISVLF LAVILAISLRLR SSR
Sbjct: 661 HLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSR 720
Query: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
FQPG+ K PGVLP YSE TLPYSYN C AS S+ TEF FLNI E QDL
Sbjct: 721 SDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDL 780
Query: 781 LCDEASWFESNDN---PEMPSNSGNLQKVSF 808
+CD ASW E N N +P S + KVSF
Sbjct: 781 VCDNASW-EQNTNHGAAGVPFASDTILKVSF 810
>gi|11128035 protocadherin gamma subfamily B, 2 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 1044 bits (2699), Expect = 0.0
Identities = 539/793 (67%), Positives = 622/793 (78%), Gaps = 1/793 (0%)
Query: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
M SSG G ++L FLLSL L IRY+IPEEL + S+VGNLAKDLG V D
Sbjct: 1 MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60
Query: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
LP R LRV AEK++FTV+PE+G+LLVSDRIDRE+ICGK+ CVL+F+ VAE PLN F++
Sbjct: 61 LPARKLRVSAEKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA 120
Query: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
V++QDINDN P F Q L+I E G TF L+ A D DVG NSLQ+Y+L+ + +F L
Sbjct: 121 VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL 180
Query: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
+K+ DG +YPEL+LK LDREE H LVLTAVDGG+P +S TTQIR+ V DANDNPP
Sbjct: 181 AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP 240
Query: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
VF+QD+YRV + E++P G VL+V A D DEGINAEI Y+F N+ ++V+ F L+ KTGE
Sbjct: 241 VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE 300
Query: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
+TT +LDFE SYT+ +EAKD G A+C +Q++I D+ND APE+ + S S + ED+
Sbjct: 301 ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS 360
Query: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
GT +ALIKT D DSG NGE+ CQ+ GN F + +KN Y+LVTDGALDRE+IPEYN+
Sbjct: 361 PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL 420
Query: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
TITATD G PPLSSS +TLHI DVNDN PVF Q SY VHVAENNPPGASIA + ASDPD
Sbjct: 421 TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD 480
Query: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
LGP+G VSY IVASDL+PRE+ SYVSVSA+SGVVFAQRAFDHEQLRAFELTLQARDQGSP
Sbjct: 481 LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
Query: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
LSANVSLRVLV D NDNAP VLYPALGP+GSALFDMVPR+AEPGYLVTKVVAVDADSG+
Sbjct: 541 ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 600
Query: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
NAWLSYH++QASEPGLFSLGLRTGEVRTAR LGDR+AARQRLLV VRDGGQ PLSAT L
Sbjct: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
Query: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
HLIFADSLQE+ PDLSDR PSDPQA+LQF+LVVALALISVLF LAVILAISLRLR SSR
Sbjct: 661 HLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSR 720
Query: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
FQPG+ K PGVLP YSE TLPYSYN C AS S+ TEF FLNI E QDL
Sbjct: 721 SDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDL 780
Query: 781 LCDEASWFESNDN 793
+CD ASW E N N
Sbjct: 781 VCDNASW-EQNTN 792
>gi|14270505 protocadherin gamma subfamily B, 5 isoform 2 precursor
[Homo sapiens]
Length = 818
Score = 1040 bits (2689), Expect = 0.0
Identities = 540/806 (66%), Positives = 634/806 (78%), Gaps = 13/806 (1%)
Query: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
MG+ +G G A + +LFLFLLSL L E IRY IPEE+ +GS+VGNLA DLGF V +
Sbjct: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
Query: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
LPTR LRV +EK +FTVS E+G LLVS R+DREEICGKK C LEFE VAE PLNF+HV
Sbjct: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
Query: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
V I+DIND+ P F+QN EL+ISE A G F LE A+D D+G+NSLQ+Y LS +P FSL
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
Query: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
I KE DGS+YPEL L+ LDRE+Q +H LVLTA+DGG P S TT++R+ V DANDNPP
Sbjct: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
Query: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
VF +D+YRV++ EN+P G++VL+V A D DEGIN+EI Y+F G Q+F L+SK+GE
Sbjct: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTG----QIFSLNSKSGE 296
Query: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
+TT +LDFEE Y++ VE +DGG A C V+I+I DENDN+PE+T S + I E+A
Sbjct: 297 ITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENA 356
Query: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
GT +ALIK HD DSG NGE+ CQL+G PFKI+ +KN+Y+LVTDG LDREQ PEYNV
Sbjct: 357 VPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNV 416
Query: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
TITATD+G PPLSSS ++ LHI DVNDN PVFHQASY V V ENNPPGASIA V ASD D
Sbjct: 417 TITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLD 476
Query: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
LG NG VSY I+ASDLEP L+SYVS+SA+SGVVFAQRAFD+EQLR FELTLQARDQGSP
Sbjct: 477 LGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSP 536
Query: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
LSANVSLRVLV DRNDNAP VLYPALGP+GSALFDMVPR+AEPGYLVTKVVAVDADSG+
Sbjct: 537 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 596
Query: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
NAWLSYH++QASEPGLFSLGLRTGEVRTAR LGDR+AARQRLLV VRDGGQ PLSAT L
Sbjct: 597 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 656
Query: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
HL+FADSLQE+ PD++DRP PSDPQAELQF+LVVALALISVLFLLAVILA++LRLR SS
Sbjct: 657 HLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSS 716
Query: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
PA FQPG+C K+ P V P YS+ TLPYSYN C A H+ TEF FL + ++ QD+
Sbjct: 717 PAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDI 775
Query: 781 LCDEASW--------FESNDNPEMPS 798
LC ++S ES +PE+ S
Sbjct: 776 LCGDSSGALFPLCNSSESTSHPELVS 801
>gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precursor
[Homo sapiens]
Length = 923
Score = 1039 bits (2687), Expect = 0.0
Identities = 539/804 (67%), Positives = 633/804 (78%), Gaps = 13/804 (1%)
Query: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
MG+ +G G A + +LFLFLLSL L E IRY IPEE+ +GS+VGNLA DLGF V +
Sbjct: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
Query: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
LPTR LRV +EK +FTVS E+G LLVS R+DREEICGKK C LEFE VAE PLNF+HV
Sbjct: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
Query: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
V I+DIND+ P F+QN EL+ISE A G F LE A+D D+G+NSLQ+Y LS +P FSL
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
Query: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
I KE DGS+YPEL L+ LDRE+Q +H LVLTA+DGG P S TT++R+ V DANDNPP
Sbjct: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
Query: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
VF +D+YRV++ EN+P G++VL+V A D DEGIN+EI Y+F G Q+F L+SK+GE
Sbjct: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTG----QIFSLNSKSGE 296
Query: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
+TT +LDFEE Y++ VE +DGG A C V+I+I DENDN+PE+T S + I E+A
Sbjct: 297 ITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENA 356
Query: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
GT +ALIK HD DSG NGE+ CQL+G PFKI+ +KN+Y+LVTDG LDREQ PEYNV
Sbjct: 357 VPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNV 416
Query: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
TITATD+G PPLSSS ++ LHI DVNDN PVFHQASY V V ENNPPGASIA V ASD D
Sbjct: 417 TITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLD 476
Query: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
LG NG VSY I+ASDLEP L+SYVS+SA+SGVVFAQRAFD+EQLR FELTLQARDQGSP
Sbjct: 477 LGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSP 536
Query: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
LSANVSLRVLV DRNDNAP VLYPALGP+GSALFDMVPR+AEPGYLVTKVVAVDADSG+
Sbjct: 537 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 596
Query: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
NAWLSYH++QASEPGLFSLGLRTGEVRTAR LGDR+AARQRLLV VRDGGQ PLSAT L
Sbjct: 597 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 656
Query: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
HL+FADSLQE+ PD++DRP PSDPQAELQF+LVVALALISVLFLLAVILA++LRLR SS
Sbjct: 657 HLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSS 716
Query: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
PA FQPG+C K+ P V P YS+ TLPYSYN C A H+ TEF FL + ++ QD+
Sbjct: 717 PAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDI 775
Query: 781 LCDEASW--------FESNDNPEM 796
LC ++S ES +PE+
Sbjct: 776 LCGDSSGALFPLCNSSESTSHPEL 799
>gi|14270499 protocadherin gamma subfamily B, 4 isoform 2 precursor
[Homo sapiens]
Length = 803
Score = 1038 bits (2684), Expect = 0.0
Identities = 531/786 (67%), Positives = 623/786 (79%), Gaps = 3/786 (0%)
Query: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
MG+ +G G A + +LFLFLLSL L E IRY IPEE+ +GS+VGNLA DLGF V +
Sbjct: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
Query: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
LPTR LRV +EK +FTVS E+G LLVS R+DREEICGKK C LEFE VAE PLNF+HV
Sbjct: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
Query: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
V I+DIND+ P F+QN EL+ISE A G F L SA D D+G N+LQ Y LSP HFSL
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSL 180
Query: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
I KE DGS+YPE+VLK PLDRE+Q +HL LTA+D G P S T QI V+V DANDN P
Sbjct: 181 INKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAP 240
Query: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
VF+QD+YRV+++EN+ G++VL+V A D DEG+NAEI ++F + + F L+S TGE
Sbjct: 241 VFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSFSEASQITQ--FDLNSNTGE 298
Query: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
+T + LDFEE Y+I +EA+DGG A C V++++ DENDNAPE+ S I EDA
Sbjct: 299 ITVLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDA 358
Query: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
ELGT +AL+K D DS NGE+ C+L+G+ PFKI+ ++NTY+LVTD LDREQ PEYN+
Sbjct: 359 ELGTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNI 418
Query: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
T+TATD+G PPLSSS +ITLHI DVNDN PVF Q+SY VHVAENNPPGASI+ VRASDPD
Sbjct: 419 TVTATDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPD 478
Query: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
LGPNG VSY I+ASDLE RELSSYVS+SA SGVVFAQRAFDHEQLRAFELTLQARDQGSP
Sbjct: 479 LGPNGQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSP 538
Query: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
LSANVSLRVLVDDRNDNAP VLYPALGP+GSALFDMVP +AEPGYLVTKVVAVDADSG+
Sbjct: 539 ALSANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGH 598
Query: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
NAWLSYH++QASEPGLFSLGLRTGEVRTAR LGDR+A RQRLLV VRDGGQ PLSAT L
Sbjct: 599 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATL 658
Query: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
HL+FADSLQE+ PD++DRP PSD QAELQF+LVVALALISVLFL+A+ILAI+LRLR SS
Sbjct: 659 HLVFADSLQEVLPDITDRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSS 718
Query: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
PA+ FQPG+C K+ V P YSE TLPYSYN C A H+ TEF FL + ++ QD+
Sbjct: 719 PASWSCFQPGLCVKSESVVPPNYSEGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDI 777
Query: 781 LCDEAS 786
LC ++S
Sbjct: 778 LCGDSS 783
>gi|13470082 protocadherin gamma subfamily B, 4 isoform 1 precursor
[Homo sapiens]
Length = 923
Score = 1038 bits (2684), Expect = 0.0
Identities = 531/786 (67%), Positives = 623/786 (79%), Gaps = 3/786 (0%)
Query: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
MG+ +G G A + +LFLFLLSL L E IRY IPEE+ +GS+VGNLA DLGF V +
Sbjct: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
Query: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
LPTR LRV +EK +FTVS E+G LLVS R+DREEICGKK C LEFE VAE PLNF+HV
Sbjct: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
Query: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
V I+DIND+ P F+QN EL+ISE A G F L SA D D+G N+LQ Y LSP HFSL
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSL 180
Query: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
I KE DGS+YPE+VLK PLDRE+Q +HL LTA+D G P S T QI V+V DANDN P
Sbjct: 181 INKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAP 240
Query: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
VF+QD+YRV+++EN+ G++VL+V A D DEG+NAEI ++F + + F L+S TGE
Sbjct: 241 VFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSFSEASQITQ--FDLNSNTGE 298
Query: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
+T + LDFEE Y+I +EA+DGG A C V++++ DENDNAPE+ S I EDA
Sbjct: 299 ITVLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDA 358
Query: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
ELGT +AL+K D DS NGE+ C+L+G+ PFKI+ ++NTY+LVTD LDREQ PEYN+
Sbjct: 359 ELGTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNI 418
Query: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
T+TATD+G PPLSSS +ITLHI DVNDN PVF Q+SY VHVAENNPPGASI+ VRASDPD
Sbjct: 419 TVTATDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPD 478
Query: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
LGPNG VSY I+ASDLE RELSSYVS+SA SGVVFAQRAFDHEQLRAFELTLQARDQGSP
Sbjct: 479 LGPNGQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSP 538
Query: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
LSANVSLRVLVDDRNDNAP VLYPALGP+GSALFDMVP +AEPGYLVTKVVAVDADSG+
Sbjct: 539 ALSANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGH 598
Query: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
NAWLSYH++QASEPGLFSLGLRTGEVRTAR LGDR+A RQRLLV VRDGGQ PLSAT L
Sbjct: 599 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATL 658
Query: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
HL+FADSLQE+ PD++DRP PSD QAELQF+LVVALALISVLFL+A+ILAI+LRLR SS
Sbjct: 659 HLVFADSLQEVLPDITDRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSS 718
Query: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
PA+ FQPG+C K+ V P YSE TLPYSYN C A H+ TEF FL + ++ QD+
Sbjct: 719 PASWSCFQPGLCVKSESVVPPNYSEGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDI 777
Query: 781 LCDEAS 786
LC ++S
Sbjct: 778 LCGDSS 783
>gi|14270490 protocadherin gamma subfamily B, 1 isoform 2 precursor
[Homo sapiens]
Length = 810
Score = 1030 bits (2663), Expect = 0.0
Identities = 542/798 (67%), Positives = 622/798 (77%), Gaps = 4/798 (0%)
Query: 15 RMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVIAEKKF 74
++LF FLLSL +S+ IRY IPEEL GS VG LAKDLG V +LPTR LRV AE +
Sbjct: 13 QVLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAED-Y 71
Query: 75 FTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDINDNPPTFS 134
F VS E+G+LLV+ RIDRE+ICG+K C LEFE VAE P+N FHV V+IQDINDN P F
Sbjct: 72 FNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFV 131
Query: 135 QNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKENLDGSRYPEL 194
+LEI E AL G F+L+SAQD DV NSL+ Y ++P+ +FSL KE+ DGS+YP L
Sbjct: 132 AKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVL 191
Query: 195 VLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMYRVNVAEN 254
+L+ PLDRE Q H L+LTA+DGG+P S TT I + V DANDN PVF+Q++YRV++ EN
Sbjct: 192 LLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQEN 251
Query: 255 LPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIGELDFEERDS 314
+P G+SVL+VMA D DEGINAEI YAF+N LF L+ TG++TT G LDFEE
Sbjct: 252 VPWGTSVLRVMATDQDEGINAEITYAFLNSPIST-SLFNLNPNTGDITTNGTLDFEETSR 310
Query: 315 YTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTAVALIKTHDL 374
Y + VEAKDGG HTA+C VQI+I DENDNAPE+T S S I ED++LGT +ALIK D
Sbjct: 311 YVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDK 370
Query: 375 DSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITATDKGNPPLSS 434
DSG NG + C + PFK+ +KN Y+LV GAL+REQ +YNVTI ATDKG P LSS
Sbjct: 371 DSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSS 430
Query: 435 SKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLVSYYIVAS 494
+ITLHI D+NDN PVFHQASY VHV+ENNPPGASIA V ASDPDLGPNG VSY I+AS
Sbjct: 431 RTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILAS 490
Query: 495 DLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVSLRVLVDD 554
DLEPREL SYVSVS +SGVVFAQRAFDHEQLRAFELTLQARDQGSP LSANVSLRVLV D
Sbjct: 491 DLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 550
Query: 555 RNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYHIVQASEP 614
NDNAP VLYPALGP+GSALFDMVPR+AEPGYLVTKVVAVDADSG+NAWLSYH++QASEP
Sbjct: 551 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 610
Query: 615 GLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADSLQEIQPD 674
GLFSLGLRTGEVRTAR LGDR+AARQRLLV VRDGGQ PLSAT LHLIFADSLQE+ PD
Sbjct: 611 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 670
Query: 675 LSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSRPATEGYFQPGVCFK 734
LSDRP PSDPQ ELQF+LVVALALISVLFLLAVILAI+LRLR SS TEG FQ G+C K
Sbjct: 671 LSDRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCSK 730
Query: 735 TVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDLLCDEASWF--ESND 792
+ PGV P +SE TLPYSYN C ASHS+ TEF LN+ E A PQDLLCD+ S SN+
Sbjct: 731 SGPGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDDPSMVVCASNE 790
Query: 793 NPEMPSNSGNLQKVSFFK 810
+ ++ + VSF K
Sbjct: 791 DHKIAYDPSLSSHVSFCK 808
>gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precursor
[Homo sapiens]
Length = 927
Score = 1028 bits (2658), Expect = 0.0
Identities = 536/772 (69%), Positives = 611/772 (79%), Gaps = 2/772 (0%)
Query: 15 RMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVIAEKKF 74
++LF FLLSL +S+ IRY IPEEL GS VG LAKDLG V +LPTR LRV AE +
Sbjct: 13 QVLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAED-Y 71
Query: 75 FTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDINDNPPTFS 134
F VS E+G+LLV+ RIDRE+ICG+K C LEFE VAE P+N FHV V+IQDINDN P F
Sbjct: 72 FNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFV 131
Query: 135 QNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKENLDGSRYPEL 194
+LEI E AL G F+L+SAQD DV NSL+ Y ++P+ +FSL KE+ DGS+YP L
Sbjct: 132 AKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVL 191
Query: 195 VLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMYRVNVAEN 254
+L+ PLDRE Q H L+LTA+DGG+P S TT I + V DANDN PVF+Q++YRV++ EN
Sbjct: 192 LLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQEN 251
Query: 255 LPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIGELDFEERDS 314
+P G+SVL+VMA D DEGINAEI YAF+N LF L+ TG++TT G LDFEE
Sbjct: 252 VPWGTSVLRVMATDQDEGINAEITYAFLNSPIST-SLFNLNPNTGDITTNGTLDFEETSR 310
Query: 315 YTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTAVALIKTHDL 374
Y + VEAKDGG HTA+C VQI+I DENDNAPE+T S S I ED++LGT +ALIK D
Sbjct: 311 YVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDK 370
Query: 375 DSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITATDKGNPPLSS 434
DSG NG + C + PFK+ +KN Y+LV GAL+REQ +YNVTI ATDKG P LSS
Sbjct: 371 DSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSS 430
Query: 435 SKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLVSYYIVAS 494
+ITLHI D+NDN PVFHQASY VHV+ENNPPGASIA V ASDPDLGPNG VSY I+AS
Sbjct: 431 RTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILAS 490
Query: 495 DLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVSLRVLVDD 554
DLEPREL SYVSVS +SGVVFAQRAFDHEQLRAFELTLQARDQGSP LSANVSLRVLV D
Sbjct: 491 DLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 550
Query: 555 RNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYHIVQASEP 614
NDNAP VLYPALGP+GSALFDMVPR+AEPGYLVTKVVAVDADSG+NAWLSYH++QASEP
Sbjct: 551 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 610
Query: 615 GLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADSLQEIQPD 674
GLFSLGLRTGEVRTAR LGDR+AARQRLLV VRDGGQ PLSAT LHLIFADSLQE+ PD
Sbjct: 611 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 670
Query: 675 LSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSRPATEGYFQPGVCFK 734
LSDRP PSDPQ ELQF+LVVALALISVLFLLAVILAI+LRLR SS TEG FQ G+C K
Sbjct: 671 LSDRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCSK 730
Query: 735 TVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDLLCDEAS 786
+ PGV P +SE TLPYSYN C ASHS+ TEF LN+ E A PQDLLCD+ S
Sbjct: 731 SGPGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDDPS 782
>gi|14270502 protocadherin gamma subfamily B, 6 isoform 2 precursor
[Homo sapiens]
Length = 820
Score = 984 bits (2545), Expect = 0.0
Identities = 511/810 (63%), Positives = 606/810 (74%), Gaps = 3/810 (0%)
Query: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
MG S R AG R++LF LL L LSEPIRY+IPEEL +GS+VGNLAKDLG V D
Sbjct: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
Query: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
+ R LRV AEK F+V E+G+LLV +RIDRE+IC ++ C L+ E V E PLN FHV
Sbjct: 61 VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
Query: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
V+I+D+ND+ P F + LEI E A G +L+ A DPD+ +NS++ Y ++ +P+FSL
Sbjct: 121 VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL 180
Query: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
+ + N DG +YPEL L+ LDREEQ H L+LTA+DGG+P RS T I + V D NDNPP
Sbjct: 181 MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP 240
Query: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
VF++D YR++++ENLP GS VL+V A D DEG+NAEI Y F + + + +F LD KTG
Sbjct: 241 VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM 300
Query: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
+ DFE+ + YT+ VEAKDGG + CKV I+I DENDN+PEI + S S I E++
Sbjct: 301 IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS 360
Query: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
G VAL KT DLD G NGE+ C ++ + PFKI + N Y+LVTDGALDREQ PEYNV
Sbjct: 361 PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV 420
Query: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
TI ATD+G PPLSSS++ITL++ D+NDN PVF Q SY VHVAENNPPGASIA V ASDPD
Sbjct: 421 TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD 480
Query: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
LG NG +SY IVASDLEP +SSYVSVSA+SGVVFAQRAFDHEQLRAF LTLQARD GSP
Sbjct: 481 LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP 540
Query: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
TLSANVSLRVLV DRNDNAP VLYPALGP+GSA FDMVPRSAEPGYLVTKVVAVDADSG+
Sbjct: 541 TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH 600
Query: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
NAWLSYH++QASEPGLFSLGLRTGEVRTAR LGDR+AARQRLLV VRDGGQ PLSAT L
Sbjct: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
Query: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
HL+FAD+LQEI PDLSDRP SDPQAELQF+LVVALALISVLFLLAVILAI+LRLR S
Sbjct: 661 HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS 720
Query: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
PAT F PG+C K+ P V P YSE TLPYSYN C A H+ EF FL + +D+
Sbjct: 721 PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCIA-HTGTKEFNFLKCSVPLHSNEDM 779
Query: 781 LC--DEASWFESNDNPEMPSNSGNLQKVSF 808
+C + + ++ S+ L VSF
Sbjct: 780 VCSVSPGALIPPHGGEDLTSHPETLTSVSF 809
>gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precursor
[Homo sapiens]
Length = 930
Score = 983 bits (2541), Expect = 0.0
Identities = 506/782 (64%), Positives = 596/782 (76%), Gaps = 1/782 (0%)
Query: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
MG S R AG R++LF LL L LSEPIRY+IPEEL +GS+VGNLAKDLG V D
Sbjct: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
Query: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
+ R LRV AEK F+V E+G+LLV +RIDRE+IC ++ C L+ E V E PLN FHV
Sbjct: 61 VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
Query: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
V+I+D+ND+ P F + LEI E A G +L+ A DPD+ +NS++ Y ++ +P+FSL
Sbjct: 121 VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL 180
Query: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
+ + N DG +YPEL L+ LDREEQ H L+LTA+DGG+P RS T I + V D NDNPP
Sbjct: 181 MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP 240
Query: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
VF++D YR++++ENLP GS VL+V A D DEG+NAEI Y F + + + +F LD KTG
Sbjct: 241 VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM 300
Query: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
+ DFE+ + YT+ VEAKDGG + CKV I+I DENDN+PEI + S S I E++
Sbjct: 301 IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS 360
Query: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
G VAL KT DLD G NGE+ C ++ + PFKI + N Y+LVTDGALDREQ PEYNV
Sbjct: 361 PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV 420
Query: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
TI ATD+G PPLSSS++ITL++ D+NDN PVF Q SY VHVAENNPPGASIA V ASDPD
Sbjct: 421 TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD 480
Query: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
LG NG +SY IVASDLEP +SSYVSVSA+SGVVFAQRAFDHEQLRAF LTLQARD GSP
Sbjct: 481 LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP 540
Query: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
TLSANVSLRVLV DRNDNAP VLYPALGP+GSA FDMVPRSAEPGYLVTKVVAVDADSG+
Sbjct: 541 TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH 600
Query: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
NAWLSYH++QASEPGLFSLGLRTGEVRTAR LGDR+AARQRLLV VRDGGQ PLSAT L
Sbjct: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
Query: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
HL+FAD+LQEI PDLSDRP SDPQAELQF+LVVALALISVLFLLAVILAI+LRLR S
Sbjct: 661 HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS 720
Query: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
PAT F PG+C K+ P V P YSE TLPYSYN C A H+ EF FL + +D+
Sbjct: 721 PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCIA-HTGTKEFNFLKCSVPLHSNEDM 779
Query: 781 LC 782
+C
Sbjct: 780 VC 781
>gi|14270508 protocadherin gamma subfamily B, 7 isoform 2 precursor
[Homo sapiens]
Length = 808
Score = 978 bits (2528), Expect = 0.0
Identities = 507/807 (62%), Positives = 600/807 (74%)
Query: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
MG S R AG R++LF LL L L EPIRY+IPEEL +GS+VGNLAKDLG V D
Sbjct: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
Query: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
+ R LRV AEK F+V ++G+LLV DRIDRE+IC ++ C L+ E V E PLN FHV
Sbjct: 61 VSARELRVSAEKLHFSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
Query: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
V+I+D+ND+ P F ++ LEISE G LESA+DPD+ +NSL +Y LSP+ +FSL
Sbjct: 121 VVIEDVNDHAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSL 180
Query: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
++K+N DG +YPELVL+ LDRE Q HHLVLTA+DGG+P RS T QIR++V DANDNPP
Sbjct: 181 VEKDNPDGGKYPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPP 240
Query: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
VF+QD+YRV++ E++P G+S+L+V A D DEGIN+EI Y+F + + + +F LD TG
Sbjct: 241 VFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGN 300
Query: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
+ T LDFEE + YTI +EAKD G + CKV +++ DENDN+PEI + S S I ED+
Sbjct: 301 ILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDS 360
Query: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
G VAL KT D DSG NGE+ C L PFKI + N Y+LVTD ALDREQ PEYNV
Sbjct: 361 PPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNV 420
Query: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
TI ATD+G PPLSSSKTITLHI DVNDN PVF Q++Y VHV ENN PGASIA V ASDPD
Sbjct: 421 TIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPD 480
Query: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
G NG VSY ++ASDLE R LSSYVSVSA+SGVVFAQRAFDHEQLR FELTLQARDQGSP
Sbjct: 481 FGLNGRVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSP 540
Query: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
LSANVSLRVLV DRNDNAP VLYPALGP+GSALFD VPR+A+PGYLVTKVVAVDADSG+
Sbjct: 541 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGH 600
Query: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
NAWLSYH+VQASEPGLFSLGLRTGEVR R LGD+++ RQRLLV VRDGGQ PLSAT L
Sbjct: 601 NAWLSYHVVQASEPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATL 660
Query: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
HL+FADSLQE+ PD SD PTPSD QAE+QF+LVVALALISVLFLLAVILAI+LRLR S
Sbjct: 661 HLVFADSLQEVLPDFSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFS 720
Query: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
P F+ +C K+ P P YSE TLPY+YN C N EF F A QD
Sbjct: 721 PTAGDCFESVLCSKSGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHCPATQDN 780
Query: 781 LCDEASWFESNDNPEMPSNSGNLQKVS 807
L ++ S P + ++ L++VS
Sbjct: 781 LNKDSMLLASILTPSVEADKKILKQVS 807
>gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precursor
[Homo sapiens]
Length = 929
Score = 975 bits (2520), Expect = 0.0
Identities = 505/805 (62%), Positives = 598/805 (74%)
Query: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
MG S R AG R++LF LL L L EPIRY+IPEEL +GS+VGNLAKDLG V D
Sbjct: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
Query: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
+ R LRV AEK F+V ++G+LLV DRIDRE+IC ++ C L+ E V E PLN FHV
Sbjct: 61 VSARELRVSAEKLHFSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
Query: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
V+I+D+ND+ P F ++ LEISE G LESA+DPD+ +NSL +Y LSP+ +FSL
Sbjct: 121 VVIEDVNDHAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSL 180
Query: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
++K+N DG +YPELVL+ LDRE Q HHLVLTA+DGG+P RS T QIR++V DANDNPP
Sbjct: 181 VEKDNPDGGKYPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPP 240
Query: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
VF+QD+YRV++ E++P G+S+L+V A D DEGIN+EI Y+F + + + +F LD TG
Sbjct: 241 VFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGN 300
Query: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
+ T LDFEE + YTI +EAKD G + CKV +++ DENDN+PEI + S S I ED+
Sbjct: 301 ILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDS 360
Query: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
G VAL KT D DSG NGE+ C L PFKI + N Y+LVTD ALDREQ PEYNV
Sbjct: 361 PPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNV 420
Query: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
TI ATD+G PPLSSSKTITLHI DVNDN PVF Q++Y VHV ENN PGASIA V ASDPD
Sbjct: 421 TIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPD 480
Query: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
G NG VSY ++ASDLE R LSSYVSVSA+SGVVFAQRAFDHEQLR FELTLQARDQGSP
Sbjct: 481 FGLNGRVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSP 540
Query: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
LSANVSLRVLV DRNDNAP VLYPALGP+GSALFD VPR+A+PGYLVTKVVAVDADSG+
Sbjct: 541 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGH 600
Query: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
NAWLSYH+VQASEPGLFSLGLRTGEVR R LGD+++ RQRLLV VRDGGQ PLSAT L
Sbjct: 601 NAWLSYHVVQASEPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATL 660
Query: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
HL+FADSLQE+ PD SD PTPSD QAE+QF+LVVALALISVLFLLAVILAI+LRLR S
Sbjct: 661 HLVFADSLQEVLPDFSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFS 720
Query: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
P F+ +C K+ P P YSE TLPY+YN C N EF F A QD
Sbjct: 721 PTAGDCFESVLCSKSGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHCPATQDN 780
Query: 781 LCDEASWFESNDNPEMPSNSGNLQK 805
L ++ S P + ++ L++
Sbjct: 781 LNKDSMLLASILTPSVEADKKILKQ 805
>gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 679 bits (1753), Expect = 0.0
Identities = 350/704 (49%), Positives = 483/704 (68%), Gaps = 3/704 (0%)
Query: 16 MLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVI--AEKK 73
+L LL L + IRY++PEEL++GS VG++++DLG +L R +R+I +
Sbjct: 14 VLLGILLGTLWETGCTQIRYSVPEELEKGSRVGDISRDLGLEPRELAERGVRIIPRGRTQ 73
Query: 74 FFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDINDNPPTF 133
F ++P +G+L+ + RIDREE+C C L +++ E + + V V ++DINDN P F
Sbjct: 74 LFALNPRSGSLVTAGRIDREELCMGAIKCQLNLDILMEDKVKIYGVEVEVRDINDNAPYF 133
Query: 134 SQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKENLDGSRYPE 193
++ E++ISE A T F L A DPD+G NSLQ Y LSP+ HFSLI + DGS+YPE
Sbjct: 134 RESELEIKISENAATEMRFPLPHAWDPDIGKNSLQSYELSPNTHFSLIVQNGADGSKYPE 193
Query: 194 LVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMYRVNVAE 253
LVLK LDREE+ HHLVLTA DGG+P R+ T +IRV+V DANDN P F Q YR +V E
Sbjct: 194 LVLKRALDREEKAAHHLVLTASDGGDPVRTGTARIRVMVLDANDNAPAFAQPEYRASVPE 253
Query: 254 NLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIGELDFEERD 313
NL G+ +L V A D DEG+NAE+ Y+F + + Q+FKLD +G ++TIGELD EE
Sbjct: 254 NLALGTQLLVVNATDPDEGVNAEVRYSFRYVDDKAAQVFKLDCNSGTISTIGELDHEESG 313
Query: 314 SYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTAVALIKTHD 373
Y + V+A D ++A KV I + D NDNAPE+ L S + + E++ GT +AL+ +D
Sbjct: 314 FYQMEVQAMDNAGYSARAKVLITVLDVNDNAPEVVLTSLASSVPENSPRGTLIALLNVND 373
Query: 374 LDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITATDKGNPPLS 433
DS NG+++C ++GN PFK+ + N Y LVTD LDREQ+P YN+T+TATD+G PPLS
Sbjct: 374 QDSEENGQVICFIQGNLPFKLEKSYGNYYSLVTDIVLDREQVPSYNITVTATDRGTPPLS 433
Query: 434 SSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLVSYYIVA 493
+ I+L++ D NDN PVF QASY+ ++ ENNP G S+ V A DPD N ++Y +
Sbjct: 434 TETHISLNVADTNDNPPVFPQASYSAYIPENNPRGVSLVSVTAHDPDCEENAQITYSLAE 493
Query: 494 SDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVSLRVLVD 553
+ ++ LSSYVS+++ +GV++A +FD+EQ R ++ + ARD G P LS+NVSL + V
Sbjct: 494 NTIQGASLSSYVSINSDTGVLYALSSFDYEQFRDLQVKVMARDNGHPPLSSNVSLSLFVL 553
Query: 554 DRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYHIVQASE 613
D+NDNAP +LYPAL +GS ++ PRSAEPGYLVTKVVAVD DSG NAWLSY +++ASE
Sbjct: 554 DQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASE 613
Query: 614 PGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADSLQEIQP 673
PGLFS+GL TGEVRTAR L DR+A +Q L+V V+D GQ PLSATV L + ADS+ ++
Sbjct: 614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPQVLA 673
Query: 674 DLSDRPTPSDPQ-AELQFHLVVALALISVLFLLAVILAISLRLR 716
DL +P++ + ++L +LVVA+A +S +FL VIL ++LRLR
Sbjct: 674 DLGSLESPANSETSDLTLYLVVAVAAVSCVFLAFVILLLALRLR 717
>gi|14196457 protocadherin gamma subfamily A, 12 isoform 2 precursor
[Homo sapiens]
Length = 820
Score = 679 bits (1753), Expect = 0.0
Identities = 350/704 (49%), Positives = 483/704 (68%), Gaps = 3/704 (0%)
Query: 16 MLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVI--AEKK 73
+L LL L + IRY++PEEL++GS VG++++DLG +L R +R+I +
Sbjct: 14 VLLGILLGTLWETGCTQIRYSVPEELEKGSRVGDISRDLGLEPRELAERGVRIIPRGRTQ 73
Query: 74 FFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDINDNPPTF 133
F ++P +G+L+ + RIDREE+C C L +++ E + + V V ++DINDN P F
Sbjct: 74 LFALNPRSGSLVTAGRIDREELCMGAIKCQLNLDILMEDKVKIYGVEVEVRDINDNAPYF 133
Query: 134 SQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKENLDGSRYPE 193
++ E++ISE A T F L A DPD+G NSLQ Y LSP+ HFSLI + DGS+YPE
Sbjct: 134 RESELEIKISENAATEMRFPLPHAWDPDIGKNSLQSYELSPNTHFSLIVQNGADGSKYPE 193
Query: 194 LVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMYRVNVAE 253
LVLK LDREE+ HHLVLTA DGG+P R+ T +IRV+V DANDN P F Q YR +V E
Sbjct: 194 LVLKRALDREEKAAHHLVLTASDGGDPVRTGTARIRVMVLDANDNAPAFAQPEYRASVPE 253
Query: 254 NLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIGELDFEERD 313
NL G+ +L V A D DEG+NAE+ Y+F + + Q+FKLD +G ++TIGELD EE
Sbjct: 254 NLALGTQLLVVNATDPDEGVNAEVRYSFRYVDDKAAQVFKLDCNSGTISTIGELDHEESG 313
Query: 314 SYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTAVALIKTHD 373
Y + V+A D ++A KV I + D NDNAPE+ L S + + E++ GT +AL+ +D
Sbjct: 314 FYQMEVQAMDNAGYSARAKVLITVLDVNDNAPEVVLTSLASSVPENSPRGTLIALLNVND 373
Query: 374 LDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITATDKGNPPLS 433
DS NG+++C ++GN PFK+ + N Y LVTD LDREQ+P YN+T+TATD+G PPLS
Sbjct: 374 QDSEENGQVICFIQGNLPFKLEKSYGNYYSLVTDIVLDREQVPSYNITVTATDRGTPPLS 433
Query: 434 SSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLVSYYIVA 493
+ I+L++ D NDN PVF QASY+ ++ ENNP G S+ V A DPD N ++Y +
Sbjct: 434 TETHISLNVADTNDNPPVFPQASYSAYIPENNPRGVSLVSVTAHDPDCEENAQITYSLAE 493
Query: 494 SDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVSLRVLVD 553
+ ++ LSSYVS+++ +GV++A +FD+EQ R ++ + ARD G P LS+NVSL + V
Sbjct: 494 NTIQGASLSSYVSINSDTGVLYALSSFDYEQFRDLQVKVMARDNGHPPLSSNVSLSLFVL 553
Query: 554 DRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYHIVQASE 613
D+NDNAP +LYPAL +GS ++ PRSAEPGYLVTKVVAVD DSG NAWLSY +++ASE
Sbjct: 554 DQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASE 613
Query: 614 PGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADSLQEIQP 673
PGLFS+GL TGEVRTAR L DR+A +Q L+V V+D GQ PLSATV L + ADS+ ++
Sbjct: 614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPQVLA 673
Query: 674 DLSDRPTPSDPQ-AELQFHLVVALALISVLFLLAVILAISLRLR 716
DL +P++ + ++L +LVVA+A +S +FL VIL ++LRLR
Sbjct: 674 DLGSLESPANSETSDLTLYLVVAVAAVSCVFLAFVILLLALRLR 717
>gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 667 bits (1720), Expect = 0.0
Identities = 374/805 (46%), Positives = 505/805 (62%), Gaps = 29/805 (3%)
Query: 14 RRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVIAEKK 73
R ML L LL + + I Y++PEE D+GS VGN+AKDLG +L +R+++ +
Sbjct: 12 RLMLLCLSLELLLEAGAGNIHYSVPEETDKGSFVGNIAKDLGLQPQELADGGVRIVSRGR 71
Query: 74 F--FTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDINDNPP 131
F ++P +G+L+ + RIDREE+C + C++ F ++ E + F V V I DINDN P
Sbjct: 72 MPLFALNPRSGSLITARRIDREELCAQSMPCLVSFNILVEDKMKLFPVEVEIIDINDNTP 131
Query: 132 TFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKENLDGSRY 191
F E +++E+ G +L QD DVG+NSLQ Y LS +PHFSL ++ DG ++
Sbjct: 132 QFQLEELEFKMNEITTPGTRVSLPFGQDLDVGMNSLQSYQLSSNPHFSLDVQQGADGPQH 191
Query: 192 PELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMYRVNV 251
PE+VL++PLDREE+ HHL+LTA DGGEP RS T +I + V DANDNPP FTQ Y +NV
Sbjct: 192 PEMVLQSPLDREEEAVHHLILTASDGGEPVRSGTLRIYIQVVDANDNPPAFTQAQYHINV 251
Query: 252 AENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIGELDFEE 311
EN+P G+ +L V A D DEG N E+ Y+F N+ V Q+F+LDS TGE++ LDFEE
Sbjct: 252 PENVPLGTQLLMVNATDPDEGANGEVTYSFHNVDHRVAQIFRLDSYTGEISNKEPLDFEE 311
Query: 312 RDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTAVALIKT 371
Y++ V+A+DG A KV I + D NDNAPE+T+ S + + E+ GT +ALI
Sbjct: 312 YKMYSMEVQAQDGAGLMAKVKVLIKVLDVNDNAPEVTITSVTTAVPENFPPGTIIALISV 371
Query: 372 HDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITATDKGNPP 431
HD DSG NG C + GN PFK+ + N YRLVT+ LDRE I YN+TITA D+G P
Sbjct: 372 HDQDSGDNGYTTCFIPGNLPFKLEKLVDNYYRLVTERTLDRELISGYNITITAIDQGTPA 431
Query: 432 LSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLVSYYI 491
LS+ I+L + D+NDN PVFHQ SY+ ++ ENNP GASI VRA D D N ++Y +
Sbjct: 432 LSTETHISLLVTDINDNSPVFHQDSYSAYIPENNPRGASIFSVRAHDLDSNENAQITYSL 491
Query: 492 VASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVSLRVL 551
+ ++ LS+Y+S+++ +GV++A R+FD+EQ R +L + ARD G P LS+NVSL +
Sbjct: 492 IEDTIQGAPLSAYLSINSDTGVLYALRSFDYEQFRDMQLKVMARDSGDPPLSSNVSLSLF 551
Query: 552 VDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYHIVQA 611
+ D+NDNAP +LYPAL +GS ++ P SAEPGYLVTKVVAVD DSG NAWLSY +++A
Sbjct: 552 LLDQNDNAPEILYPALPTDGSTGVELAPLSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKA 611
Query: 612 SEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADSLQEI 671
SEPGLFS+GL TGEVRTAR L DR+A +Q L+V V+D GQ PLSATV L + AD + +I
Sbjct: 612 SEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRISDI 671
Query: 672 QPDL-SDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR----PATEGY 726
DL S P+ ++L +LVVA A +S +FL VI+ ++ RLR + A+ G
Sbjct: 672 LADLGSLEPSAKPNDSDLTLYLVVAAAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGG 731
Query: 727 F--QPGVCFKTVPGV---LPTYSERTLPYSYNPCAASHSSNTEFKFLNI----------- 770
PG F V GV L TYS + + A S S+ F N
Sbjct: 732 LASMPGSHFVGVDGVRAFLQTYS-----HEVSLTADSRKSHLIFPQPNYADTLISQESCE 786
Query: 771 -KAENAAPQDLLCDEASWFESNDNP 794
K +APQ LL D+ F P
Sbjct: 787 KKGFLSAPQSLLEDKKEPFSQQAPP 811
>gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 666 bits (1719), Expect = 0.0
Identities = 350/712 (49%), Positives = 477/712 (66%), Gaps = 3/712 (0%)
Query: 8 RGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLR 67
R P ++L L LL L + IRY+IPEEL++GS VGN+ KDLG +L +R
Sbjct: 6 RHPQRSEQVLLLTLLGTLWGAAAAQIRYSIPEELEKGSFVGNIVKDLGLEPQELAEHGVR 65
Query: 68 VIAEKKF--FTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQD 125
+++ + F+++P NG+L+ + RIDREE+C + C++ F ++ E LN + V V I D
Sbjct: 66 IVSRGRMQLFSLNPRNGSLVTAGRIDREELCAQSPRCLVSFNILVEDKLNLYPVEVEIVD 125
Query: 126 INDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKEN 185
INDN P F + E++I E A + F L DPDVG+NSLQ + LS + HFS+ +
Sbjct: 126 INDNTPRFLKEELEVKILENAAPSSRFPLMEVYDPDVGMNSLQGFKLSGNSHFSVDVQSE 185
Query: 186 LDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQD 245
G +YPELVL+ LDRE + + LVLTA+DGG+P RS QI V V D NDN P+FTQ
Sbjct: 186 AHGPKYPELVLEGTLDREGEAVYRLVLTAMDGGDPVRSSVAQILVTVLDVNDNTPMFTQP 245
Query: 246 MYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIG 305
+YRV+V ENLP G+ VL V A D DEG++ E+ Y+F+ I +++ Q+F L+ TGE++T
Sbjct: 246 VYRVSVPENLPVGTPVLAVTATDQDEGVHGEVTYSFVKITEKISQIFCLNVLTGEISTSA 305
Query: 306 ELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTA 365
LD+E+ Y +GVEA+DG KV I I D NDN PE+ + S S+ I E A GT
Sbjct: 306 NLDYEDSSFYELGVEARDGPGLRDRAKVLITILDVNDNVPEVVVTSGSRTIAESAPPGTV 365
Query: 366 VALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITAT 425
+AL + D DSG NG + C + + PF++ + N YRLVT+ ALDRE++ YN+T+TAT
Sbjct: 366 IALFQVFDRDSGLNGLVTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYNITVTAT 425
Query: 426 DKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNG 485
DKG PPLS+ I+L++ D NDN P F +SY+V+V ENNP GASI V A DPD+ N
Sbjct: 426 DKGTPPLSTETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDPDVDQNA 485
Query: 486 LVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSAN 545
VSY + L+ LSSYVS+++ +G+++A R+FD+EQLR +L + A D G P LS+N
Sbjct: 486 QVSYSLAEDTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTASDSGDPPLSSN 545
Query: 546 VSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLS 605
VSL + V D+NDNAP +LYPAL +GS ++ PRSAEPGYLVTKVVAVD DSG NAWLS
Sbjct: 546 VSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLS 605
Query: 606 YHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFA 665
Y +++ASEPGLFS+GL TGEVRTAR L DR+A +Q L+V V+D GQ PLSATV L + A
Sbjct: 606 YRLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVA 665
Query: 666 DSLQEIQPDL-SDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLR 716
D + +I DL S P+ ++L +LVVA+A +S +FL VI+ ++LRL+
Sbjct: 666 DRIPDILADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLQ 717
>gi|14196474 protocadherin gamma subfamily A, 6 isoform 2 precursor
[Homo sapiens]
Length = 818
Score = 666 bits (1719), Expect = 0.0
Identities = 350/712 (49%), Positives = 477/712 (66%), Gaps = 3/712 (0%)
Query: 8 RGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLR 67
R P ++L L LL L + IRY+IPEEL++GS VGN+ KDLG +L +R
Sbjct: 6 RHPQRSEQVLLLTLLGTLWGAAAAQIRYSIPEELEKGSFVGNIVKDLGLEPQELAEHGVR 65
Query: 68 VIAEKKF--FTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQD 125
+++ + F+++P NG+L+ + RIDREE+C + C++ F ++ E LN + V V I D
Sbjct: 66 IVSRGRMQLFSLNPRNGSLVTAGRIDREELCAQSPRCLVSFNILVEDKLNLYPVEVEIVD 125
Query: 126 INDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKEN 185
INDN P F + E++I E A + F L DPDVG+NSLQ + LS + HFS+ +
Sbjct: 126 INDNTPRFLKEELEVKILENAAPSSRFPLMEVYDPDVGMNSLQGFKLSGNSHFSVDVQSE 185
Query: 186 LDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQD 245
G +YPELVL+ LDRE + + LVLTA+DGG+P RS QI V V D NDN P+FTQ
Sbjct: 186 AHGPKYPELVLEGTLDREGEAVYRLVLTAMDGGDPVRSSVAQILVTVLDVNDNTPMFTQP 245
Query: 246 MYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIG 305
+YRV+V ENLP G+ VL V A D DEG++ E+ Y+F+ I +++ Q+F L+ TGE++T
Sbjct: 246 VYRVSVPENLPVGTPVLAVTATDQDEGVHGEVTYSFVKITEKISQIFCLNVLTGEISTSA 305
Query: 306 ELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTA 365
LD+E+ Y +GVEA+DG KV I I D NDN PE+ + S S+ I E A GT
Sbjct: 306 NLDYEDSSFYELGVEARDGPGLRDRAKVLITILDVNDNVPEVVVTSGSRTIAESAPPGTV 365
Query: 366 VALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITAT 425
+AL + D DSG NG + C + + PF++ + N YRLVT+ ALDRE++ YN+T+TAT
Sbjct: 366 IALFQVFDRDSGLNGLVTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYNITVTAT 425
Query: 426 DKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNG 485
DKG PPLS+ I+L++ D NDN P F +SY+V+V ENNP GASI V A DPD+ N
Sbjct: 426 DKGTPPLSTETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDPDVDQNA 485
Query: 486 LVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSAN 545
VSY + L+ LSSYVS+++ +G+++A R+FD+EQLR +L + A D G P LS+N
Sbjct: 486 QVSYSLAEDTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTASDSGDPPLSSN 545
Query: 546 VSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLS 605
VSL + V D+NDNAP +LYPAL +GS ++ PRSAEPGYLVTKVVAVD DSG NAWLS
Sbjct: 546 VSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLS 605
Query: 606 YHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFA 665
Y +++ASEPGLFS+GL TGEVRTAR L DR+A +Q L+V V+D GQ PLSATV L + A
Sbjct: 606 YRLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVA 665
Query: 666 DSLQEIQPDL-SDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLR 716
D + +I DL S P+ ++L +LVVA+A +S +FL VI+ ++LRL+
Sbjct: 666 DRIPDILADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLQ 717
>gi|14196459 protocadherin gamma subfamily A, 1 isoform 2 precursor
[Homo sapiens]
Length = 823
Score = 666 bits (1719), Expect = 0.0
Identities = 348/706 (49%), Positives = 472/706 (66%), Gaps = 3/706 (0%)
Query: 14 RRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVIAEKK 73
R ML L LL + + I Y++PEE D+GS VGN+AKDLG +L +R+++ +
Sbjct: 12 RLMLLCLSLELLLEAGAGNIHYSVPEETDKGSFVGNIAKDLGLQPQELADGGVRIVSRGR 71
Query: 74 F--FTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDINDNPP 131
F ++P +G+L+ + RIDREE+C + C++ F ++ E + F V V I DINDN P
Sbjct: 72 MPLFALNPRSGSLITARRIDREELCAQSMPCLVSFNILVEDKMKLFPVEVEIIDINDNTP 131
Query: 132 TFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKENLDGSRY 191
F E +++E+ G +L QD DVG+NSLQ Y LS +PHFSL ++ DG ++
Sbjct: 132 QFQLEELEFKMNEITTPGTRVSLPFGQDLDVGMNSLQSYQLSSNPHFSLDVQQGADGPQH 191
Query: 192 PELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMYRVNV 251
PE+VL++PLDREE+ HHL+LTA DGGEP RS T +I + V DANDNPP FTQ Y +NV
Sbjct: 192 PEMVLQSPLDREEEAVHHLILTASDGGEPVRSGTLRIYIQVVDANDNPPAFTQAQYHINV 251
Query: 252 AENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIGELDFEE 311
EN+P G+ +L V A D DEG N E+ Y+F N+ V Q+F+LDS TGE++ LDFEE
Sbjct: 252 PENVPLGTQLLMVNATDPDEGANGEVTYSFHNVDHRVAQIFRLDSYTGEISNKEPLDFEE 311
Query: 312 RDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTAVALIKT 371
Y++ V+A+DG A KV I + D NDNAPE+T+ S + + E+ GT +ALI
Sbjct: 312 YKMYSMEVQAQDGAGLMAKVKVLIKVLDVNDNAPEVTITSVTTAVPENFPPGTIIALISV 371
Query: 372 HDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITATDKGNPP 431
HD DSG NG C + GN PFK+ + N YRLVT+ LDRE I YN+TITA D+G P
Sbjct: 372 HDQDSGDNGYTTCFIPGNLPFKLEKLVDNYYRLVTERTLDRELISGYNITITAIDQGTPA 431
Query: 432 LSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLVSYYI 491
LS+ I+L + D+NDN PVFHQ SY+ ++ ENNP GASI VRA D D N ++Y +
Sbjct: 432 LSTETHISLLVTDINDNSPVFHQDSYSAYIPENNPRGASIFSVRAHDLDSNENAQITYSL 491
Query: 492 VASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVSLRVL 551
+ ++ LS+Y+S+++ +GV++A R+FD+EQ R +L + ARD G P LS+NVSL +
Sbjct: 492 IEDTIQGAPLSAYLSINSDTGVLYALRSFDYEQFRDMQLKVMARDSGDPPLSSNVSLSLF 551
Query: 552 VDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYHIVQA 611
+ D+NDNAP +LYPAL +GS ++ P SAEPGYLVTKVVAVD DSG NAWLSY +++A
Sbjct: 552 LLDQNDNAPEILYPALPTDGSTGVELAPLSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKA 611
Query: 612 SEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADSLQEI 671
SEPGLFS+GL TGEVRTAR L DR+A +Q L+V V+D GQ PLSATV L + AD + +I
Sbjct: 612 SEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRISDI 671
Query: 672 QPDL-SDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLR 716
DL S P+ ++L +LVVA A +S +FL VI+ ++ RLR
Sbjct: 672 LADLGSLEPSAKPNDSDLTLYLVVAAAAVSCVFLAFVIVLLAHRLR 717
>gi|14196451 protocadherin gamma subfamily A, 11 isoform 2 precursor
[Homo sapiens]
Length = 837
Score = 663 bits (1711), Expect = 0.0
Identities = 343/711 (48%), Positives = 485/711 (68%), Gaps = 3/711 (0%)
Query: 8 RGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLR 67
RG + +L L L + IRY++PEE ++GS VGN++KDLG +L R +R
Sbjct: 7 RGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVR 66
Query: 68 VIAEKK--FFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQD 125
+++ K F V+P +G+L+ + RIDREE+C S+C L E++ E L + V V I D
Sbjct: 67 IVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIID 126
Query: 126 INDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKEN 185
INDN P+F ++ E+++SE A+ GA FAL +A+DPDVGVNSLQ Y LSP+ +FSL +
Sbjct: 127 INDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGR 186
Query: 186 LDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQD 245
DG++ PELVL+ LDRE++ H L+LTA+DGG+P R IRV+V D ND+ P+FTQ
Sbjct: 187 TDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQS 246
Query: 246 MYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIG 305
+YRV+V EN+ +G+ VL V A D DEGIN E++Y+F N+ + ++F+LDS+TGE+ G
Sbjct: 247 VYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRG 306
Query: 306 ELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTA 365
LDFE+ Y + ++ +DGG + I + D NDNAPEIT+ S I E++ GT
Sbjct: 307 SLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTV 366
Query: 366 VALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITAT 425
+AL+ D DSG NG++ C + + PFK+ + N Y+L+T LDRE + YN+T+TAT
Sbjct: 367 IALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTAT 426
Query: 426 DKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNG 485
D+G+PPLS+ + L++ D NDN PVF +SY+ ++ ENNP GASI V A DPD N
Sbjct: 427 DQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNA 486
Query: 486 LVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSAN 545
LV+Y + ++ LSSYVS+++ +GV++A ++FD+EQ R EL + ARD G P LS+N
Sbjct: 487 LVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSN 546
Query: 546 VSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLS 605
VSL + V D+NDNAP +LYPAL +GS ++ PRSAEPGYLVTKVVAVD DSG NAWLS
Sbjct: 547 VSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLS 606
Query: 606 YHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFA 665
Y +++ASEPGLF++G TGEVRTAR L DR+A +Q L+V V+D GQ PLSATV L + A
Sbjct: 607 YRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVA 666
Query: 666 DSLQEIQPDLSDRPTPSDPQ-AELQFHLVVALALISVLFLLAVILAISLRL 715
DS+ E+ DL + ++ + ++L +LVVA+A +S +FL+ VI+ ++LRL
Sbjct: 667 DSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRL 717
>gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precursor
[Homo sapiens]
Length = 935
Score = 663 bits (1711), Expect = 0.0
Identities = 343/711 (48%), Positives = 485/711 (68%), Gaps = 3/711 (0%)
Query: 8 RGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLR 67
RG + +L L L + IRY++PEE ++GS VGN++KDLG +L R +R
Sbjct: 7 RGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVR 66
Query: 68 VIAEKK--FFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQD 125
+++ K F V+P +G+L+ + RIDREE+C S+C L E++ E L + V V I D
Sbjct: 67 IVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIID 126
Query: 126 INDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKEN 185
INDN P+F ++ E+++SE A+ GA FAL +A+DPDVGVNSLQ Y LSP+ +FSL +
Sbjct: 127 INDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGR 186
Query: 186 LDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQD 245
DG++ PELVL+ LDRE++ H L+LTA+DGG+P R IRV+V D ND+ P+FTQ
Sbjct: 187 TDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQS 246
Query: 246 MYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIG 305
+YRV+V EN+ +G+ VL V A D DEGIN E++Y+F N+ + ++F+LDS+TGE+ G
Sbjct: 247 VYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRG 306
Query: 306 ELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTA 365
LDFE+ Y + ++ +DGG + I + D NDNAPEIT+ S I E++ GT
Sbjct: 307 SLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTV 366
Query: 366 VALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITAT 425
+AL+ D DSG NG++ C + + PFK+ + N Y+L+T LDRE + YN+T+TAT
Sbjct: 367 IALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTAT 426
Query: 426 DKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNG 485
D+G+PPLS+ + L++ D NDN PVF +SY+ ++ ENNP GASI V A DPD N
Sbjct: 427 DQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNA 486
Query: 486 LVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSAN 545
LV+Y + ++ LSSYVS+++ +GV++A ++FD+EQ R EL + ARD G P LS+N
Sbjct: 487 LVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSN 546
Query: 546 VSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLS 605
VSL + V D+NDNAP +LYPAL +GS ++ PRSAEPGYLVTKVVAVD DSG NAWLS
Sbjct: 547 VSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLS 606
Query: 606 YHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFA 665
Y +++ASEPGLF++G TGEVRTAR L DR+A +Q L+V V+D GQ PLSATV L + A
Sbjct: 607 YRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVA 666
Query: 666 DSLQEIQPDLSDRPTPSDPQ-AELQFHLVVALALISVLFLLAVILAISLRL 715
DS+ E+ DL + ++ + ++L +LVVA+A +S +FL+ VI+ ++LRL
Sbjct: 667 DSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRL 717
>gi|14270487 protocadherin gamma subfamily A, 9 isoform 2 precursor
[Homo sapiens]
Length = 828
Score = 660 bits (1704), Expect = 0.0
Identities = 367/805 (45%), Positives = 512/805 (63%), Gaps = 23/805 (2%)
Query: 14 RRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVIAEKK 73
R +L LL +L + + IRY++PEE ++G +VGN++KDL +L R +R+++ +
Sbjct: 12 RLVLLCSLLGMLWEARASQIRYSVPEETEKGYIVGNISKDLALEPRELAERRVRIVSRGR 71
Query: 74 --FFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDINDNPP 131
F+++P +G L+ + RIDREE+C + C++ F+++ E + + + + + DIND+ P
Sbjct: 72 TQLFSLNPRSGTLVTAGRIDREELCAQSPRCLVNFKVLVEDRVKLYGIEIEVTDINDSAP 131
Query: 132 TFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKENLDGSRY 191
F E++I+E+A+ GA + L A DPDVGVNSLQ Y LSP+ HFSL + +G+
Sbjct: 132 KFQAESLEVKINEIAVPGARYPLPEAIDPDVGVNSLQSYQLSPNHHFSLNVQTGDNGAIN 191
Query: 192 PELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMYRVNV 251
PELVL+ LDREE HHLVLTA DGGEP RS T +I V V D NDN PVF Q +YRV V
Sbjct: 192 PELVLERALDREEATAHHLVLTASDGGEPRRSSTVRIHVTVLDTNDNAPVFAQRIYRVKV 251
Query: 252 AENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIGELDFEE 311
EN+P G+ +L A D+DEGIN ++ Y F I ++ LF+L+ TGE++T LD+EE
Sbjct: 252 LENVPPGTWLLTATASDLDEGINGKVAYKFWKINEKQSLLFQLNENTGEISTAKSLDYEE 311
Query: 312 RDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTAVALIKT 371
Y + ++A+DGG + KV I + D NDN PE+T+ S ++EDA GT + L
Sbjct: 312 CSFYEMEIQAEDGGGLKGWTKVLISVEDVNDNRPEVTITSLFSPVREDAPQGTVILLFNA 371
Query: 372 HDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITATDKGNPP 431
HD DSG NG+++C ++ N F + ++ YRL+T LDRE+ EYN+T+TATD+G PP
Sbjct: 372 HDRDSGKNGQVVCSIQENLSFTLENSEEDYYRLLTAQILDREKASEYNITVTATDRGTPP 431
Query: 432 LSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLVSYYI 491
LS+ ITL + D+NDN P F QASY+V++ ENN G SI V A DPD N V Y +
Sbjct: 432 LSTEIHITLQVTDINDNPPAFSQASYSVYLPENNARGTSIFSVIAYDPDSNENSRVIYSL 491
Query: 492 VASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVSLRVL 551
++ LS+YVS+++ +GV++A +FD+EQ R ++ + A D GSP LS+NVSLR+
Sbjct: 492 AEDTIQGSPLSTYVSINSDTGVLYALCSFDYEQFRDLQMQVTASDSGSPPLSSNVSLRLF 551
Query: 552 VDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYHIVQA 611
V D+NDNAP +LYPAL +GS ++ PRSAEPGYLVTKVVAVD DSG NAWLSY + +A
Sbjct: 552 VLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLFKA 611
Query: 612 SEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADSLQEI 671
SEPGLFS+GL TGEVRTAR L DR+A +Q L+V V+D GQ PLSATV L + ADS+ +I
Sbjct: 612 SEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAIADSIPDI 671
Query: 672 QPDLSDRPTPSDPQA-ELQFHLVVALALISVLFLLAVILAISLRLR--CSS---RPATEG 725
DL P+D +A +L +LVVA+A++S +FL VI ++LRLR SS R ++G
Sbjct: 672 LADLGSLQIPADLEASDLTLYLVVAVAVVSCVFLTFVITLLALRLRHWHSSHLLRATSDG 731
Query: 726 YF-QPGVCFKTVPGV---LPTYSERTLPYSYNPCAASHSSNTEFKFLN-----IKAENAA 776
P F V GV L TYS+ ++ A S S+ F N I ++
Sbjct: 732 LAGVPTSHFVGVDGVRAFLQTYSQ-----EFSLTADSRKSHLIFPQPNYADTLISQQSCE 786
Query: 777 PQDLLCDEA-SWFESNDNPEMPSNS 800
+ LC S F D P +P +S
Sbjct: 787 KNEPLCVSVDSKFPIEDTPLVPVSS 811
>gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 660 bits (1702), Expect = 0.0
Identities = 340/706 (48%), Positives = 474/706 (67%), Gaps = 3/706 (0%)
Query: 14 RRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVIAEKK 73
R +L LL +L + + IRY++PEE ++G +VGN++KDL +L R +R+++ +
Sbjct: 12 RLVLLCSLLGMLWEARASQIRYSVPEETEKGYIVGNISKDLALEPRELAERRVRIVSRGR 71
Query: 74 --FFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDINDNPP 131
F+++P +G L+ + RIDREE+C + C++ F+++ E + + + + + DIND+ P
Sbjct: 72 TQLFSLNPRSGTLVTAGRIDREELCAQSPRCLVNFKVLVEDRVKLYGIEIEVTDINDSAP 131
Query: 132 TFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKENLDGSRY 191
F E++I+E+A+ GA + L A DPDVGVNSLQ Y LSP+ HFSL + +G+
Sbjct: 132 KFQAESLEVKINEIAVPGARYPLPEAIDPDVGVNSLQSYQLSPNHHFSLNVQTGDNGAIN 191
Query: 192 PELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMYRVNV 251
PELVL+ LDREE HHLVLTA DGGEP RS T +I V V D NDN PVF Q +YRV V
Sbjct: 192 PELVLERALDREEATAHHLVLTASDGGEPRRSSTVRIHVTVLDTNDNAPVFAQRIYRVKV 251
Query: 252 AENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIGELDFEE 311
EN+P G+ +L A D+DEGIN ++ Y F I ++ LF+L+ TGE++T LD+EE
Sbjct: 252 LENVPPGTWLLTATASDLDEGINGKVAYKFWKINEKQSLLFQLNENTGEISTAKSLDYEE 311
Query: 312 RDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTAVALIKT 371
Y + ++A+DGG + KV I + D NDN PE+T+ S ++EDA GT + L
Sbjct: 312 CSFYEMEIQAEDGGGLKGWTKVLISVEDVNDNRPEVTITSLFSPVREDAPQGTVILLFNA 371
Query: 372 HDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITATDKGNPP 431
HD DSG NG+++C ++ N F + ++ YRL+T LDRE+ EYN+T+TATD+G PP
Sbjct: 372 HDRDSGKNGQVVCSIQENLSFTLENSEEDYYRLLTAQILDREKASEYNITVTATDRGTPP 431
Query: 432 LSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLVSYYI 491
LS+ ITL + D+NDN P F QASY+V++ ENN G SI V A DPD N V Y +
Sbjct: 432 LSTEIHITLQVTDINDNPPAFSQASYSVYLPENNARGTSIFSVIAYDPDSNENSRVIYSL 491
Query: 492 VASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVSLRVL 551
++ LS+YVS+++ +GV++A +FD+EQ R ++ + A D GSP LS+NVSLR+
Sbjct: 492 AEDTIQGSPLSTYVSINSDTGVLYALCSFDYEQFRDLQMQVTASDSGSPPLSSNVSLRLF 551
Query: 552 VDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYHIVQA 611
V D+NDNAP +LYPAL +GS ++ PRSAEPGYLVTKVVAVD DSG NAWLSY + +A
Sbjct: 552 VLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLFKA 611
Query: 612 SEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADSLQEI 671
SEPGLFS+GL TGEVRTAR L DR+A +Q L+V V+D GQ PLSATV L + ADS+ +I
Sbjct: 612 SEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAIADSIPDI 671
Query: 672 QPDLSDRPTPSDPQA-ELQFHLVVALALISVLFLLAVILAISLRLR 716
DL P+D +A +L +LVVA+A++S +FL VI ++LRLR
Sbjct: 672 LADLGSLQIPADLEASDLTLYLVVAVAVVSCVFLTFVITLLALRLR 717
>gi|14196468 protocadherin gamma subfamily A, 4 isoform 2 precursor
[Homo sapiens]
Length = 820
Score = 658 bits (1698), Expect = 0.0
Identities = 335/710 (47%), Positives = 470/710 (66%), Gaps = 3/710 (0%)
Query: 10 PAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVI 69
P R + LL +L ++ +E I Y++ EE + GS+VGN+AKDLG +L R +R++
Sbjct: 8 PDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIV 67
Query: 70 AEKK--FFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDIN 127
+ + F ++P +G L+ + RIDREE+C + CV E++ E + V V I D+N
Sbjct: 68 SRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVN 127
Query: 128 DNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKENLD 187
DNPP+F E++++E GA F L A DPDVGVNSLQ Y L+ + +FSL + D
Sbjct: 128 DNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGAD 187
Query: 188 GSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMY 247
G +YPELVL+ LDREE+ HHLVLTA DGG+P RS T +I +I+ D NDN PVFTQ Y
Sbjct: 188 GIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEY 247
Query: 248 RVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIGEL 307
V+V EN+P G+ +L V A D DEG N ++ Y+F + ++ QLF+L+S +G++T +G L
Sbjct: 248 HVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGL 307
Query: 308 DFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTAVA 367
D+E+ Y I VEA DG A KV + + DENDNAPE+T+ S + +QE + GT +A
Sbjct: 308 DYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIA 367
Query: 368 LIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITATDK 427
L HD DSG NG + C + N PF + + N YRL+T LDRE++ EYN+T+TATD+
Sbjct: 368 LFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQ 427
Query: 428 GNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLV 487
G PPLS+ I+L ++D+NDN P F ASY+ ++ ENNP GASI + A DPD G N +
Sbjct: 428 GTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARI 487
Query: 488 SYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVS 547
+Y + + LSSYVS+++ +G+++A +FD+EQ R +L + A D G P LS+NVS
Sbjct: 488 TYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVS 547
Query: 548 LRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYH 607
L + V D+NDN P +LYP +GS ++ PRSA+ GYLVTKVVAVD DSG NAWLSY
Sbjct: 548 LSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYS 607
Query: 608 IVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADS 667
++++SEPGLF++GL TGEVRTAR L DR+A +QRL+V V+D GQ PLSATV L + ADS
Sbjct: 608 LLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADS 667
Query: 668 LQEIQPDLSDRPTPSDP-QAELQFHLVVALALISVLFLLAVILAISLRLR 716
+ ++ DL +DP + L +LVVA+A +S +FL V + ++L+LR
Sbjct: 668 IPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLR 717
>gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 658 bits (1698), Expect = 0.0
Identities = 335/710 (47%), Positives = 470/710 (66%), Gaps = 3/710 (0%)
Query: 10 PAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVI 69
P R + LL +L ++ +E I Y++ EE + GS+VGN+AKDLG +L R +R++
Sbjct: 8 PDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIV 67
Query: 70 AEKK--FFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDIN 127
+ + F ++P +G L+ + RIDREE+C + CV E++ E + V V I D+N
Sbjct: 68 SRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVN 127
Query: 128 DNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKENLD 187
DNPP+F E++++E GA F L A DPDVGVNSLQ Y L+ + +FSL + D
Sbjct: 128 DNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGAD 187
Query: 188 GSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMY 247
G +YPELVL+ LDREE+ HHLVLTA DGG+P RS T +I +I+ D NDN PVFTQ Y
Sbjct: 188 GIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEY 247
Query: 248 RVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIGEL 307
V+V EN+P G+ +L V A D DEG N ++ Y+F + ++ QLF+L+S +G++T +G L
Sbjct: 248 HVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGL 307
Query: 308 DFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTAVA 367
D+E+ Y I VEA DG A KV + + DENDNAPE+T+ S + +QE + GT +A
Sbjct: 308 DYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIA 367
Query: 368 LIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITATDK 427
L HD DSG NG + C + N PF + + N YRL+T LDRE++ EYN+T+TATD+
Sbjct: 368 LFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQ 427
Query: 428 GNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLV 487
G PPLS+ I+L ++D+NDN P F ASY+ ++ ENNP GASI + A DPD G N +
Sbjct: 428 GTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARI 487
Query: 488 SYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVS 547
+Y + + LSSYVS+++ +G+++A +FD+EQ R +L + A D G P LS+NVS
Sbjct: 488 TYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVS 547
Query: 548 LRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYH 607
L + V D+NDN P +LYP +GS ++ PRSA+ GYLVTKVVAVD DSG NAWLSY
Sbjct: 548 LSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYS 607
Query: 608 IVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADS 667
++++SEPGLF++GL TGEVRTAR L DR+A +QRL+V V+D GQ PLSATV L + ADS
Sbjct: 608 LLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADS 667
Query: 668 LQEIQPDLSDRPTPSDP-QAELQFHLVVALALISVLFLLAVILAISLRLR 716
+ ++ DL +DP + L +LVVA+A +S +FL V + ++L+LR
Sbjct: 668 IPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLR 717
>gi|14196471 protocadherin gamma subfamily A, 5 isoform 2 precursor
[Homo sapiens]
Length = 813
Score = 657 bits (1696), Expect = 0.0
Identities = 347/704 (49%), Positives = 464/704 (65%), Gaps = 3/704 (0%)
Query: 16 MLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVIAEKK-- 73
+L LL L + S IRY++PEELD+GS VGN+AKDLG +L R +R+++ +
Sbjct: 14 LLPFMLLGTLCEPGSGQIRYSMPEELDKGSFVGNIAKDLGLEPQELAERGVRIVSRGRTQ 73
Query: 74 FFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDINDNPPTF 133
F ++P +G+L+ + RIDREE+C + CV+ F ++ E + + V V I DINDN P F
Sbjct: 74 LFALNPRSGSLVTAGRIDREELCAQSPLCVVNFNILVENKMKIYGVEVEIIDINDNFPRF 133
Query: 134 SQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKENLDGSRYPE 193
+++++E A G L A+D DVGVNSL+ Y LS + HFSL DG +YPE
Sbjct: 134 RDEELKVKVNENAAAGTRLVLPFARDADVGVNSLRSYQLSSNLHFSLDVVSGTDGQKYPE 193
Query: 194 LVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMYRVNVAE 253
LVL+ PLDRE++ H L+LTA+DGG+P S TT IRV V DANDN P+FT Y V+V E
Sbjct: 194 LVLEQPLDREKETVHDLLLTALDGGDPVLSGTTHIRVTVLDANDNAPLFTPSEYSVSVPE 253
Query: 254 NLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIGELDFEERD 313
N+P G+ +L + A D DEGIN ++ Y+F N +++ + F+LDS GE++T+ LD+EE
Sbjct: 254 NIPVGTRLLMLTATDPDEGINGKLTYSFRNEEEKISETFQLDSNLGEISTLQSLDYEESR 313
Query: 314 SYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTAVALIKTHD 373
Y + V A+DGG A KV + + D NDNAPE+ L S + I ED GT +AL HD
Sbjct: 314 FYLMEVVAQDGGALVASAKVVVTVQDVNDNAPEVILTSLTSSISEDCLPGTVIALFSVHD 373
Query: 374 LDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITATDKGNPPLS 433
DSG NGEI C + N PFK+ + N Y L+T LDRE+ +YN+T+T D G PPLS
Sbjct: 374 GDSGENGEIACSIPRNLPFKLEKSVDNYYHLLTTRDLDREETSDYNITLTVMDHGTPPLS 433
Query: 434 SSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLVSYYIVA 493
+ I L + DVNDN P F QASY+ V ENNP G SI V A DPD G N V+Y +
Sbjct: 434 TESHIPLKVADVNDNPPNFPQASYSTSVTENNPRGVSIFSVTAHDPDSGDNARVTYSLAE 493
Query: 494 SDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVSLRVLVD 553
+ LSSYVS+++ +GV++A R+FD+EQLR +L + A D G+P LS+NVSL + V
Sbjct: 494 DTFQGAPLSSYVSINSDTGVLYALRSFDYEQLRDLQLWVTASDSGNPPLSSNVSLSLFVL 553
Query: 554 DRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYHIVQASE 613
D+NDN P +LYPAL +GS ++ PRSAEPGYLVTKVVAVD DSG NAWLSY +++ASE
Sbjct: 554 DQNDNTPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASE 613
Query: 614 PGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADSLQEIQP 673
PGLF++GL TGEVRTAR L DR+A +Q L+V V D GQ PLSAT + + AD + +I
Sbjct: 614 PGLFAVGLHTGEVRTARALLDRDALKQSLVVAVEDHGQPPLSATFTVTVAVADRIPDILA 673
Query: 674 DLSDRPTPSDPQ-AELQFHLVVALALISVLFLLAVILAISLRLR 716
DL TP DP+ +L +LVVA+A +S +FL VI+ + LRLR
Sbjct: 674 DLGSIKTPIDPEDLDLTLYLVVAVAAVSCVFLAFVIVLLVLRLR 717
>gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 657 bits (1696), Expect = 0.0
Identities = 347/704 (49%), Positives = 464/704 (65%), Gaps = 3/704 (0%)
Query: 16 MLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVIAEKK-- 73
+L LL L + S IRY++PEELD+GS VGN+AKDLG +L R +R+++ +
Sbjct: 14 LLPFMLLGTLCEPGSGQIRYSMPEELDKGSFVGNIAKDLGLEPQELAERGVRIVSRGRTQ 73
Query: 74 FFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDINDNPPTF 133
F ++P +G+L+ + RIDREE+C + CV+ F ++ E + + V V I DINDN P F
Sbjct: 74 LFALNPRSGSLVTAGRIDREELCAQSPLCVVNFNILVENKMKIYGVEVEIIDINDNFPRF 133
Query: 134 SQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKENLDGSRYPE 193
+++++E A G L A+D DVGVNSL+ Y LS + HFSL DG +YPE
Sbjct: 134 RDEELKVKVNENAAAGTRLVLPFARDADVGVNSLRSYQLSSNLHFSLDVVSGTDGQKYPE 193
Query: 194 LVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMYRVNVAE 253
LVL+ PLDRE++ H L+LTA+DGG+P S TT IRV V DANDN P+FT Y V+V E
Sbjct: 194 LVLEQPLDREKETVHDLLLTALDGGDPVLSGTTHIRVTVLDANDNAPLFTPSEYSVSVPE 253
Query: 254 NLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIGELDFEERD 313
N+P G+ +L + A D DEGIN ++ Y+F N +++ + F+LDS GE++T+ LD+EE
Sbjct: 254 NIPVGTRLLMLTATDPDEGINGKLTYSFRNEEEKISETFQLDSNLGEISTLQSLDYEESR 313
Query: 314 SYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTAVALIKTHD 373
Y + V A+DGG A KV + + D NDNAPE+ L S + I ED GT +AL HD
Sbjct: 314 FYLMEVVAQDGGALVASAKVVVTVQDVNDNAPEVILTSLTSSISEDCLPGTVIALFSVHD 373
Query: 374 LDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITATDKGNPPLS 433
DSG NGEI C + N PFK+ + N Y L+T LDRE+ +YN+T+T D G PPLS
Sbjct: 374 GDSGENGEIACSIPRNLPFKLEKSVDNYYHLLTTRDLDREETSDYNITLTVMDHGTPPLS 433
Query: 434 SSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLVSYYIVA 493
+ I L + DVNDN P F QASY+ V ENNP G SI V A DPD G N V+Y +
Sbjct: 434 TESHIPLKVADVNDNPPNFPQASYSTSVTENNPRGVSIFSVTAHDPDSGDNARVTYSLAE 493
Query: 494 SDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVSLRVLVD 553
+ LSSYVS+++ +GV++A R+FD+EQLR +L + A D G+P LS+NVSL + V
Sbjct: 494 DTFQGAPLSSYVSINSDTGVLYALRSFDYEQLRDLQLWVTASDSGNPPLSSNVSLSLFVL 553
Query: 554 DRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYHIVQASE 613
D+NDN P +LYPAL +GS ++ PRSAEPGYLVTKVVAVD DSG NAWLSY +++ASE
Sbjct: 554 DQNDNTPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASE 613
Query: 614 PGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADSLQEIQP 673
PGLF++GL TGEVRTAR L DR+A +Q L+V V D GQ PLSAT + + AD + +I
Sbjct: 614 PGLFAVGLHTGEVRTARALLDRDALKQSLVVAVEDHGQPPLSATFTVTVAVADRIPDILA 673
Query: 674 DLSDRPTPSDPQ-AELQFHLVVALALISVLFLLAVILAISLRLR 716
DL TP DP+ +L +LVVA+A +S +FL VI+ + LRLR
Sbjct: 674 DLGSIKTPIDPEDLDLTLYLVVAVAAVSCVFLAFVIVLLVLRLR 717
>gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 656 bits (1693), Expect = 0.0
Identities = 339/708 (47%), Positives = 479/708 (67%), Gaps = 3/708 (0%)
Query: 12 GQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVIAE 71
G+ L LL L + S IRY++ EELD+GS VGN+A DLG +L R +R+++
Sbjct: 10 GRGLALLCALLGTLCETGSGQIRYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSR 69
Query: 72 KK--FFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDINDN 129
+ F+++P++G+L+ ++RIDREE+C + C+++ ++ E L F V + I+DINDN
Sbjct: 70 GRTQLFSLNPQSGSLVTAERIDREELCAQIPLCLVKINILVEDKLKIFEVEIEIKDINDN 129
Query: 130 PPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKENLDGS 189
P F E++I EL + G F +++A DPDVG+NSLQ Y LSP+ +FSL +G+
Sbjct: 130 APNFPTEELEIKIGELTVPGTRFPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGA 189
Query: 190 RYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMYRV 249
+YPELVL+ LDRE++ H LVL A DGG+P S I+VIV DANDNPP+FTQ YRV
Sbjct: 190 KYPELVLERALDREKKEIHQLVLVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRV 249
Query: 250 NVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIGELDF 309
+V EN+P G+ +L V A D DEG NA++ Y + ++ ++F L+S +GE++ + LD+
Sbjct: 250 SVWENVPVGTRLLTVNATDPDEGFNAQVSYILDKMPGKIAEIFHLNSVSGEVSILKSLDY 309
Query: 310 EERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTAVALI 369
E+ Y I +EA+DG + K+ + + D NDNAPEIT+ S + + E+ +G +ALI
Sbjct: 310 EDAMFYEIKIEAQDGPGLLSRAKILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIALI 369
Query: 370 KTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITATDKGN 429
HD DSG NG++ + GN PFK+ + YRLVT +LDREQI EYN+++ A+D G+
Sbjct: 370 DVHDRDSGQNGQVEVFVLGNLPFKLEKSIDQYYRLVTATSLDREQISEYNISLRASDGGS 429
Query: 430 PPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLVSY 489
PPLS+ ITLH++D+NDN P F SY+ ++ ENNP GASI V A DPD N ++Y
Sbjct: 430 PPLSTETHITLHVIDINDNPPTFPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARITY 489
Query: 490 YIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVSLR 549
+ L+ LSS+VS+++ +GV++A R+FD+EQ R +L + A D G+P LS+NVSL
Sbjct: 490 ALTEDTLQGAPLSSFVSINSNTGVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLN 549
Query: 550 VLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYHIV 609
+ V D+NDNAP +LYPAL +GS ++ PRSAEPGYLVTKVVAVD DSG NAWLSY ++
Sbjct: 550 LFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLL 609
Query: 610 QASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADSLQ 669
+ASEPGLFS+GL TGEVRTAR L DR+A +Q L+V V+D GQ PLSATV L + AD +
Sbjct: 610 KASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIP 669
Query: 670 EIQPDL-SDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLR 716
+I DL S P+ ++L +LVVA+A +S +FL VI+ ++LRLR
Sbjct: 670 DILADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLR 717
>gi|14196465 protocadherin gamma subfamily A, 3 isoform 2 precursor
[Homo sapiens]
Length = 829
Score = 656 bits (1693), Expect = 0.0
Identities = 339/708 (47%), Positives = 479/708 (67%), Gaps = 3/708 (0%)
Query: 12 GQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVIAE 71
G+ L LL L + S IRY++ EELD+GS VGN+A DLG +L R +R+++
Sbjct: 10 GRGLALLCALLGTLCETGSGQIRYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSR 69
Query: 72 KK--FFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDINDN 129
+ F+++P++G+L+ ++RIDREE+C + C+++ ++ E L F V + I+DINDN
Sbjct: 70 GRTQLFSLNPQSGSLVTAERIDREELCAQIPLCLVKINILVEDKLKIFEVEIEIKDINDN 129
Query: 130 PPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKENLDGS 189
P F E++I EL + G F +++A DPDVG+NSLQ Y LSP+ +FSL +G+
Sbjct: 130 APNFPTEELEIKIGELTVPGTRFPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGA 189
Query: 190 RYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMYRV 249
+YPELVL+ LDRE++ H LVL A DGG+P S I+VIV DANDNPP+FTQ YRV
Sbjct: 190 KYPELVLERALDREKKEIHQLVLVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRV 249
Query: 250 NVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIGELDF 309
+V EN+P G+ +L V A D DEG NA++ Y + ++ ++F L+S +GE++ + LD+
Sbjct: 250 SVWENVPVGTRLLTVNATDPDEGFNAQVSYILDKMPGKIAEIFHLNSVSGEVSILKSLDY 309
Query: 310 EERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTAVALI 369
E+ Y I +EA+DG + K+ + + D NDNAPEIT+ S + + E+ +G +ALI
Sbjct: 310 EDAMFYEIKIEAQDGPGLLSRAKILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIALI 369
Query: 370 KTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITATDKGN 429
HD DSG NG++ + GN PFK+ + YRLVT +LDREQI EYN+++ A+D G+
Sbjct: 370 DVHDRDSGQNGQVEVFVLGNLPFKLEKSIDQYYRLVTATSLDREQISEYNISLRASDGGS 429
Query: 430 PPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLVSY 489
PPLS+ ITLH++D+NDN P F SY+ ++ ENNP GASI V A DPD N ++Y
Sbjct: 430 PPLSTETHITLHVIDINDNPPTFPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARITY 489
Query: 490 YIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVSLR 549
+ L+ LSS+VS+++ +GV++A R+FD+EQ R +L + A D G+P LS+NVSL
Sbjct: 490 ALTEDTLQGAPLSSFVSINSNTGVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLN 549
Query: 550 VLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYHIV 609
+ V D+NDNAP +LYPAL +GS ++ PRSAEPGYLVTKVVAVD DSG NAWLSY ++
Sbjct: 550 LFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLL 609
Query: 610 QASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADSLQ 669
+ASEPGLFS+GL TGEVRTAR L DR+A +Q L+V V+D GQ PLSATV L + AD +
Sbjct: 610 KASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIP 669
Query: 670 EIQPDL-SDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLR 716
+I DL S P+ ++L +LVVA+A +S +FL VI+ ++LRLR
Sbjct: 670 DILADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLR 717
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,212,715
Number of Sequences: 37866
Number of extensions: 1404099
Number of successful extensions: 10058
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 2991
Number of HSP's gapped (non-prelim): 638
length of query: 814
length of database: 18,247,518
effective HSP length: 111
effective length of query: 703
effective length of database: 14,044,392
effective search space: 9873207576
effective search space used: 9873207576
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.