Search of human proteins with 14270493

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|14270493 protocadherin gamma subfamily B, 2 isoform 2
precursor [Homo sapiens]
         (811 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|14270493 protocadherin gamma subfamily B, 2 isoform 2 precurs...  1606   0.0  
gi|11128035 protocadherin gamma subfamily B, 2 isoform 1 precurs...  1598   0.0  
gi|14270490 protocadherin gamma subfamily B, 1 isoform 2 precurs...  1112   0.0  
gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precurs...  1112   0.0  
gi|14270505 protocadherin gamma subfamily B, 5 isoform 2 precurs...  1077   0.0  
gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precurs...  1077   0.0  
gi|14270502 protocadherin gamma subfamily B, 6 isoform 2 precurs...  1055   0.0  
gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precurs...  1050   0.0  
gi|14270499 protocadherin gamma subfamily B, 4 isoform 2 precurs...  1047   0.0  
gi|13470082 protocadherin gamma subfamily B, 4 isoform 1 precurs...  1047   0.0  
gi|14270496 protocadherin gamma subfamily B, 3 isoform 2 precurs...  1047   0.0  
gi|14270508 protocadherin gamma subfamily B, 7 isoform 2 precurs...  1045   0.0  
gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precurs...  1045   0.0  
gi|11128033 protocadherin gamma subfamily B, 3 isoform 1 precurs...  1044   0.0  
gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precurs...   699   0.0  
gi|14196474 protocadherin gamma subfamily A, 6 isoform 2 precurs...   699   0.0  
gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precurs...   691   0.0  
gi|14196465 protocadherin gamma subfamily A, 3 isoform 2 precurs...   691   0.0  
gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precurs...   687   0.0  
gi|14196457 protocadherin gamma subfamily A, 12 isoform 2 precur...   687   0.0  
gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precurs...   683   0.0  
gi|14270487 protocadherin gamma subfamily A, 9 isoform 2 precurs...   683   0.0  
gi|14196471 protocadherin gamma subfamily A, 5 isoform 2 precurs...   680   0.0  
gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precurs...   680   0.0  
gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precurs...   678   0.0  
gi|14196459 protocadherin gamma subfamily A, 1 isoform 2 precurs...   678   0.0  
gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precurs...   674   0.0  
gi|14196477 protocadherin gamma subfamily A, 7 isoform 2 precurs...   674   0.0  
gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precur...   672   0.0  
gi|14196448 protocadherin gamma subfamily A, 10 isoform 2 precur...   672   0.0  

>gi|14270493 protocadherin gamma subfamily B, 2 isoform 2 precursor
           [Homo sapiens]
          Length = 811

 Score = 1606 bits (4158), Expect = 0.0
 Identities = 811/811 (100%), Positives = 811/811 (100%)

Query: 1   MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60
           MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD
Sbjct: 1   MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60

Query: 61  LPARKLRVSAEKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA 120
           LPARKLRVSAEKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA
Sbjct: 61  LPARKLRVSAEKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA 120

Query: 121 VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL 180
           VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL
Sbjct: 121 VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL 180

Query: 181 AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP 240
           AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP
Sbjct: 181 AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP 240

Query: 241 VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE 300
           VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE
Sbjct: 241 VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE 300

Query: 301 ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS 360
           ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS
Sbjct: 301 ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS 360

Query: 361 PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL 420
           PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL
Sbjct: 361 PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL 420

Query: 421 TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD 480
           TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD
Sbjct: 421 TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD 480

Query: 481 LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
           LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP
Sbjct: 481 LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540

Query: 541 ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 600
           ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH
Sbjct: 541 ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 600

Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
           NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL
Sbjct: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660

Query: 661 HLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSR 720
           HLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSR
Sbjct: 661 HLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSR 720

Query: 721 SDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDL 780
           SDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDL
Sbjct: 721 SDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDL 780

Query: 781 VCDNASWEQNTNHGAAGVPFASDTILKVSFN 811
           VCDNASWEQNTNHGAAGVPFASDTILKVSFN
Sbjct: 781 VCDNASWEQNTNHGAAGVPFASDTILKVSFN 811


>gi|11128035 protocadherin gamma subfamily B, 2 isoform 1 precursor
           [Homo sapiens]
          Length = 931

 Score = 1598 bits (4138), Expect = 0.0
 Identities = 807/807 (100%), Positives = 807/807 (100%)

Query: 1   MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60
           MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD
Sbjct: 1   MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60

Query: 61  LPARKLRVSAEKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA 120
           LPARKLRVSAEKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA
Sbjct: 61  LPARKLRVSAEKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA 120

Query: 121 VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL 180
           VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL
Sbjct: 121 VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL 180

Query: 181 AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP 240
           AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP
Sbjct: 181 AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP 240

Query: 241 VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE 300
           VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE
Sbjct: 241 VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE 300

Query: 301 ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS 360
           ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS
Sbjct: 301 ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS 360

Query: 361 PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL 420
           PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL
Sbjct: 361 PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL 420

Query: 421 TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD 480
           TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD
Sbjct: 421 TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD 480

Query: 481 LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
           LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP
Sbjct: 481 LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540

Query: 541 ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 600
           ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH
Sbjct: 541 ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 600

Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
           NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL
Sbjct: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660

Query: 661 HLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSR 720
           HLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSR
Sbjct: 661 HLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSR 720

Query: 721 SDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDL 780
           SDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDL
Sbjct: 721 SDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDL 780

Query: 781 VCDNASWEQNTNHGAAGVPFASDTILK 807
           VCDNASWEQNTNHGAAGVPFASDTILK
Sbjct: 781 VCDNASWEQNTNHGAAGVPFASDTILK 807


>gi|14270490 protocadherin gamma subfamily B, 1 isoform 2 precursor
           [Homo sapiens]
          Length = 810

 Score = 1112 bits (2877), Expect = 0.0
 Identities = 578/794 (72%), Positives = 653/794 (82%), Gaps = 5/794 (0%)

Query: 15  QVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAEKEY 74
           QVL PFLLSLF GA+  QIRY+IPEELA  S VG LAKDLGLSVR+LP RKLRVSAE +Y
Sbjct: 13  QVLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAE-DY 71

Query: 75  FTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLFK 134
           F V+ ESGDLLV+ RIDRE+ICG++  C L+F+TVAENP+N+F++ V++QDINDN P F 
Sbjct: 72  FNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFV 131

Query: 135 QTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPEL 194
              I+L+I ES  PG  F LD A D+DV  NSL+ Y +N N+YF L+ K++PDG KYP L
Sbjct: 132 AKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVL 191

Query: 195 ILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLRED 254
           +L+  LDRE  S H+L+LTA+DGGDPP SGTT I I+VTDANDN PVFSQ+VYRV+L+E+
Sbjct: 192 LLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQEN 251

Query: 255 VPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIASS 314
           VP G  VL+V ATD+DEGINAEITY+F N        FNLN  TG+ITT   LDFE  S 
Sbjct: 252 VPWGTSVLRVMATDQDEGINAEITYAFLNSPISTS-LFNLNPNTGDITTNGTLDFEETSR 310

Query: 315 YTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTRDR 374
           Y LS+EAKD G   AHC++Q+EI+D+ND APEV   S S  +PEDS  GTVIALIK RD+
Sbjct: 311 YVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDK 370

Query: 375 DSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPLSS 434
           DSG+NG V C       F L+S+SKNYYKLV  GAL+RE+  +YN+TI ATD GKP LSS
Sbjct: 371 DSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSS 430

Query: 435 SIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIVAS 494
              +TLHISD+NDNAPVF Q SY+VHV+ENNPPGASIAQ+SASDPDLGP+G+VSYSI+AS
Sbjct: 431 RTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILAS 490

Query: 495 DLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 554
           DL+PRE+LSYVSVS QSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD
Sbjct: 491 DLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 550

Query: 555 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 614
           LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP
Sbjct: 551 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 610

Query: 615 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 674
           GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD
Sbjct: 611 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 670

Query: 675 LSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPGLSSK 734
           LSDR EPSDPQ +LQFYLVVALALISVLF LAVILAI+LRLR SS  D   CFQ GL SK
Sbjct: 671 LSDRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCSK 730

Query: 735 PGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDLVCDNASW---EQNT 791
            GPGV PN+SEGTLPYSYNLC+AS SAKTEFN LN+TPE+ P QDL+CD+ S      N 
Sbjct: 731 SGPGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDDPSMVVCASNE 790

Query: 792 NHGAAGVPFASDTI 805
           +H  A  P  S  +
Sbjct: 791 DHKIAYDPSLSSHV 804


>gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precursor
           [Homo sapiens]
          Length = 927

 Score = 1112 bits (2876), Expect = 0.0
 Identities = 578/791 (73%), Positives = 652/791 (82%), Gaps = 5/791 (0%)

Query: 15  QVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAEKEY 74
           QVL PFLLSLF GA+  QIRY+IPEELA  S VG LAKDLGLSVR+LP RKLRVSAE +Y
Sbjct: 13  QVLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAE-DY 71

Query: 75  FTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLFK 134
           F V+ ESGDLLV+ RIDRE+ICG++  C L+F+TVAENP+N+F++ V++QDINDN P F 
Sbjct: 72  FNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFV 131

Query: 135 QTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPEL 194
              I+L+I ES  PG  F LD A D+DV  NSL+ Y +N N+YF L+ K++PDG KYP L
Sbjct: 132 AKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVL 191

Query: 195 ILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLRED 254
           +L+  LDRE  S H+L+LTA+DGGDPP SGTT I I+VTDANDN PVFSQ+VYRV+L+E+
Sbjct: 192 LLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQEN 251

Query: 255 VPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIASS 314
           VP G  VL+V ATD+DEGINAEITY+F N        FNLN  TG+ITT   LDFE  S 
Sbjct: 252 VPWGTSVLRVMATDQDEGINAEITYAFLNSPISTS-LFNLNPNTGDITTNGTLDFEETSR 310

Query: 315 YTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTRDR 374
           Y LS+EAKD G   AHC++Q+EI+D+ND APEV   S S  +PEDS  GTVIALIK RD+
Sbjct: 311 YVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDK 370

Query: 375 DSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPLSS 434
           DSG+NG V C       F L+S+SKNYYKLV  GAL+RE+  +YN+TI ATD GKP LSS
Sbjct: 371 DSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSS 430

Query: 435 SIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIVAS 494
              +TLHISD+NDNAPVF Q SY+VHV+ENNPPGASIAQ+SASDPDLGP+G+VSYSI+AS
Sbjct: 431 RTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILAS 490

Query: 495 DLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 554
           DL+PRE+LSYVSVS QSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD
Sbjct: 491 DLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 550

Query: 555 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 614
           LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP
Sbjct: 551 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 610

Query: 615 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 674
           GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD
Sbjct: 611 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 670

Query: 675 LSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPGLSSK 734
           LSDR EPSDPQ +LQFYLVVALALISVLF LAVILAI+LRLR SS  D   CFQ GL SK
Sbjct: 671 LSDRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCSK 730

Query: 735 PGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDLVCDNASW---EQNT 791
            GPGV PN+SEGTLPYSYNLC+AS SAKTEFN LN+TPE+ P QDL+CD+ S      N 
Sbjct: 731 SGPGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDDPSMVVCASNE 790

Query: 792 NHGAAGVPFAS 802
           +H  A  P  S
Sbjct: 791 DHKIAYDPSLS 801


>gi|14270505 protocadherin gamma subfamily B, 5 isoform 2 precursor
           [Homo sapiens]
          Length = 818

 Score = 1077 bits (2784), Expect = 0.0
 Identities = 553/786 (70%), Positives = 642/786 (81%), Gaps = 5/786 (0%)

Query: 1   MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60
           M + +G  G    L VL  FLLSLF  AL  QIRY IPEE+ K SVVGNLA DLG SV++
Sbjct: 1   MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60

Query: 61  LPARKLRVSAEKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA 120
           LP RKLRVS+EK YFTV+ ESG+LLVS R+DRE+ICGK+P C L+F+ VAENPLN +++ 
Sbjct: 61  LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120

Query: 121 VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL 180
           V ++DIND+TP F Q    L+I ES +PGT F L+ A D+D+G NSLQ+Y L+ N  F L
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180

Query: 181 AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP 240
             K+  DG KYPEL L+ +LDRE+ S H+LVLTA+DGG PP SGTT++RI+VTDANDNPP
Sbjct: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240

Query: 241 VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE 300
           VF++DVYRV+LRE+VPPG  VLQV+ATD+DEGIN+EITYSF+   +     F+LN K+GE
Sbjct: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQ----IFSLNSKSGE 296

Query: 301 ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS 360
           ITT+  LDFE    Y++ +E +D G L A C++++ I D+ND +PEV   S+   + E++
Sbjct: 297 ITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENA 356

Query: 361 PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL 420
            PGT+IALIK  D+DSGENGEV CQ+ G   F + SSSKN YKLVTDG LDRE+ PEYN+
Sbjct: 357 VPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNV 416

Query: 421 TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD 480
           TITATD GKPPLSSSI V LHI DVNDNAPVF Q SY+V V ENNPPGASIAQ+ ASD D
Sbjct: 417 TITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLD 476

Query: 481 LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
           LG +GQVSYSI+ASDL+P  + SYVS+SAQSGVVFAQRAFD+EQLR FELTLQARDQGSP
Sbjct: 477 LGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSP 536

Query: 541 ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 600
           ALSANVSLRVLVGD NDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH
Sbjct: 537 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 596

Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
           NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL
Sbjct: 597 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 656

Query: 661 HLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSR 720
           HL+FADSLQEVLPD++DR  PSDPQA+LQFYLVVALALISVLF LAVILA++LRLR SS 
Sbjct: 657 HLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSS 716

Query: 721 SDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDL 780
             AW CFQPGL  K GP V PNYS+GTLPYSYNLCVA  + KTEFNFL  + +L   QD+
Sbjct: 717 PAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDI 775

Query: 781 VCDNAS 786
           +C ++S
Sbjct: 776 LCGDSS 781


>gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precursor
           [Homo sapiens]
          Length = 923

 Score = 1077 bits (2784), Expect = 0.0
 Identities = 553/786 (70%), Positives = 642/786 (81%), Gaps = 5/786 (0%)

Query: 1   MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60
           M + +G  G    L VL  FLLSLF  AL  QIRY IPEE+ K SVVGNLA DLG SV++
Sbjct: 1   MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60

Query: 61  LPARKLRVSAEKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA 120
           LP RKLRVS+EK YFTV+ ESG+LLVS R+DRE+ICGK+P C L+F+ VAENPLN +++ 
Sbjct: 61  LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120

Query: 121 VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL 180
           V ++DIND+TP F Q    L+I ES +PGT F L+ A D+D+G NSLQ+Y L+ N  F L
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180

Query: 181 AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP 240
             K+  DG KYPEL L+ +LDRE+ S H+LVLTA+DGG PP SGTT++RI+VTDANDNPP
Sbjct: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240

Query: 241 VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE 300
           VF++DVYRV+LRE+VPPG  VLQV+ATD+DEGIN+EITYSF+   +     F+LN K+GE
Sbjct: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQ----IFSLNSKSGE 296

Query: 301 ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS 360
           ITT+  LDFE    Y++ +E +D G L A C++++ I D+ND +PEV   S+   + E++
Sbjct: 297 ITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENA 356

Query: 361 PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL 420
            PGT+IALIK  D+DSGENGEV CQ+ G   F + SSSKN YKLVTDG LDRE+ PEYN+
Sbjct: 357 VPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNV 416

Query: 421 TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD 480
           TITATD GKPPLSSSI V LHI DVNDNAPVF Q SY+V V ENNPPGASIAQ+ ASD D
Sbjct: 417 TITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLD 476

Query: 481 LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
           LG +GQVSYSI+ASDL+P  + SYVS+SAQSGVVFAQRAFD+EQLR FELTLQARDQGSP
Sbjct: 477 LGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSP 536

Query: 541 ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 600
           ALSANVSLRVLVGD NDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH
Sbjct: 537 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 596

Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
           NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL
Sbjct: 597 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 656

Query: 661 HLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSR 720
           HL+FADSLQEVLPD++DR  PSDPQA+LQFYLVVALALISVLF LAVILA++LRLR SS 
Sbjct: 657 HLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSS 716

Query: 721 SDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDL 780
             AW CFQPGL  K GP V PNYS+GTLPYSYNLCVA  + KTEFNFL  + +L   QD+
Sbjct: 717 PAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDI 775

Query: 781 VCDNAS 786
           +C ++S
Sbjct: 776 LCGDSS 781


>gi|14270502 protocadherin gamma subfamily B, 6 isoform 2 precursor
           [Homo sapiens]
          Length = 820

 Score = 1055 bits (2728), Expect = 0.0
 Identities = 540/797 (67%), Positives = 623/797 (78%), Gaps = 1/797 (0%)

Query: 15  QVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAEKEY 74
           QVL P LL LF   L   IRYSIPEELAK SVVGNLAKDLGLSV D+ ARKLRVSAEK +
Sbjct: 15  QVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRVSAEKLH 74

Query: 75  FTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLFK 134
           F+V+ ESGDLLV +RIDREQIC ++  C L  + V ENPLNIF++ V+++D+ND+ P F 
Sbjct: 75  FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFD 134

Query: 135 QTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPEL 194
           + +I+L+I ES   GT   LDPA D D+  NS++ Y +N N YF L  +   DG KYPEL
Sbjct: 135 KKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDGGKYPEL 194

Query: 195 ILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLRED 254
            L+  LDREE   H L+LTA+DGGDPP+S T  I I V D NDNPPVFS+D YR++L E+
Sbjct: 195 SLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYRISLSEN 254

Query: 255 VPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIASS 314
           +PPG  VLQVTATD+DEG+NAEI Y F +  +  KH F+L+EKTG I      DFE    
Sbjct: 255 LPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNNQSFDFEDVER 314

Query: 315 YTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTRDR 374
           YT+ +EAKD G L+  C + +EILD+ND +PE+I+TS+S  + E+SPPG V+AL KTRD 
Sbjct: 315 YTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVALFKTRDL 374

Query: 375 DSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPLSS 434
           D G NGEV C +  +  F + SSS NYYKLVTDGALDRE+ PEYN+TI ATD GKPPLSS
Sbjct: 375 DFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDRGKPPLSS 434

Query: 435 SIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIVAS 494
           S  +TL+++D+NDNAPVF QTSY+VHVAENNPPGASIAQ+SASDPDLG +G +SYSIVAS
Sbjct: 435 SRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHISYSIVAS 494

Query: 495 DLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 554
           DL+P  + SYVSVSAQSGVVFAQRAFDHEQLRAF LTLQARD GSP LSANVSLRVLVGD
Sbjct: 495 DLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVSLRVLVGD 554

Query: 555 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 614
            NDNAPRVLYPALGPDGSA FDMVPR+AEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP
Sbjct: 555 RNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 614

Query: 615 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 674
           GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHL+FAD+LQE+LPD
Sbjct: 615 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADNLQEILPD 674

Query: 675 LSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPGLSSK 734
           LSDR   SDPQA+LQFYLVVALALISVLF LAVILAI+LRLR S     WDCF PGL  K
Sbjct: 675 LSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLSPATWDCFHPGLCVK 734

Query: 735 PGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDLVCDNASWEQNTNHG 794
            GP V PNYSEGTLPYSYNLC+A    K EFNFL  +  L   +D+VC  +       HG
Sbjct: 735 SGPVVPPNYSEGTLPYSYNLCIAHTGTK-EFNFLKCSVPLHSNEDMVCSVSPGALIPPHG 793

Query: 795 AAGVPFASDTILKVSFN 811
              +    +T+  VSF+
Sbjct: 794 GEDLTSHPETLTSVSFS 810


>gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precursor
           [Homo sapiens]
          Length = 930

 Score = 1050 bits (2714), Expect = 0.0
 Identities = 537/791 (67%), Positives = 619/791 (78%), Gaps = 1/791 (0%)

Query: 15  QVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAEKEY 74
           QVL P LL LF   L   IRYSIPEELAK SVVGNLAKDLGLSV D+ ARKLRVSAEK +
Sbjct: 15  QVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRVSAEKLH 74

Query: 75  FTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLFK 134
           F+V+ ESGDLLV +RIDREQIC ++  C L  + V ENPLNIF++ V+++D+ND+ P F 
Sbjct: 75  FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFD 134

Query: 135 QTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPEL 194
           + +I+L+I ES   GT   LDPA D D+  NS++ Y +N N YF L  +   DG KYPEL
Sbjct: 135 KKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDGGKYPEL 194

Query: 195 ILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLRED 254
            L+  LDREE   H L+LTA+DGGDPP+S T  I I V D NDNPPVFS+D YR++L E+
Sbjct: 195 SLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYRISLSEN 254

Query: 255 VPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIASS 314
           +PPG  VLQVTATD+DEG+NAEI Y F +  +  KH F+L+EKTG I      DFE    
Sbjct: 255 LPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNNQSFDFEDVER 314

Query: 315 YTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTRDR 374
           YT+ +EAKD G L+  C + +EILD+ND +PE+I+TS+S  + E+SPPG V+AL KTRD 
Sbjct: 315 YTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVALFKTRDL 374

Query: 375 DSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPLSS 434
           D G NGEV C +  +  F + SSS NYYKLVTDGALDRE+ PEYN+TI ATD GKPPLSS
Sbjct: 375 DFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDRGKPPLSS 434

Query: 435 SIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIVAS 494
           S  +TL+++D+NDNAPVF QTSY+VHVAENNPPGASIAQ+SASDPDLG +G +SYSIVAS
Sbjct: 435 SRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHISYSIVAS 494

Query: 495 DLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 554
           DL+P  + SYVSVSAQSGVVFAQRAFDHEQLRAF LTLQARD GSP LSANVSLRVLVGD
Sbjct: 495 DLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVSLRVLVGD 554

Query: 555 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 614
            NDNAPRVLYPALGPDGSA FDMVPR+AEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP
Sbjct: 555 RNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 614

Query: 615 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 674
           GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHL+FAD+LQE+LPD
Sbjct: 615 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADNLQEILPD 674

Query: 675 LSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPGLSSK 734
           LSDR   SDPQA+LQFYLVVALALISVLF LAVILAI+LRLR S     WDCF PGL  K
Sbjct: 675 LSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLSPATWDCFHPGLCVK 734

Query: 735 PGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDLVCDNASWEQNTNHG 794
            GP V PNYSEGTLPYSYNLC+A    K EFNFL  +  L   +D+VC  +       HG
Sbjct: 735 SGPVVPPNYSEGTLPYSYNLCIAHTGTK-EFNFLKCSVPLHSNEDMVCSVSPGALIPPHG 793

Query: 795 AAGVPFASDTI 805
              +    +T+
Sbjct: 794 GEDLTSHPETL 804


>gi|14270499 protocadherin gamma subfamily B, 4 isoform 2 precursor
           [Homo sapiens]
          Length = 803

 Score = 1047 bits (2708), Expect = 0.0
 Identities = 535/786 (68%), Positives = 631/786 (80%), Gaps = 3/786 (0%)

Query: 1   MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60
           M + +G  G    L VL  FLLSLF  AL  QIRY IPEE+ K SVVGNLA DLG SV++
Sbjct: 1   MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60

Query: 61  LPARKLRVSAEKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA 120
           LP RKLRVS+EK YFTV+ ESG+LLVS R+DRE+ICGK+P C L+F+ VAENPLN +++ 
Sbjct: 61  LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120

Query: 121 VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL 180
           V ++DIND+TP F Q    L+I ES +PGT F L  A D+D+G N+LQ Y L+ +++F L
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSL 180

Query: 181 AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP 240
             K+  DG KYPE++LK  LDRE+   + L LTA+D G PP S T QI + VTDANDN P
Sbjct: 181 INKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAP 240

Query: 241 VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE 300
           VFSQDVYRV+L E+V PG  VLQVTATD+DEG+NAEIT+SF    +  +  F+LN  TGE
Sbjct: 241 VFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSFSEASQITQ--FDLNSNTGE 298

Query: 301 ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS 360
           IT  + LDFE    Y++ +EA+D G + A C+++VE++D+ND APEVI  S+   + ED+
Sbjct: 299 ITVLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDA 358

Query: 361 PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL 420
             GT IAL+K RD+DS  NGEV C++ G+  F + +SS+N YKLVTD  LDRE+ PEYN+
Sbjct: 359 ELGTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNI 418

Query: 421 TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD 480
           T+TATD GKPPLSSS  +TLHI DVNDNAPVF Q+SY+VHVAENNPPGASI+Q+ ASDPD
Sbjct: 419 TVTATDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPD 478

Query: 481 LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
           LGP+GQVSY I+ASDL+ RE+ SYVS+SA+SGVVFAQRAFDHEQLRAFELTLQARDQGSP
Sbjct: 479 LGPNGQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSP 538

Query: 541 ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 600
           ALSANVSLRVLV D NDNAPRVLYPALGPDGSALFDMVP AAEPGYLVTKVVAVDADSGH
Sbjct: 539 ALSANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGH 598

Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
           NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDA RQRLLVAVRDGGQPPLSATATL
Sbjct: 599 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATL 658

Query: 661 HLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSR 720
           HL+FADSLQEVLPD++DR +PSD QA+LQFYLVVALALISVLF +A+ILAI+LRLR SS 
Sbjct: 659 HLVFADSLQEVLPDITDRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSS 718

Query: 721 SDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDL 780
             +W CFQPGL  K    V PNYSEGTLPYSYNLCVA  + KTEFNFL  + +L   QD+
Sbjct: 719 PASWSCFQPGLCVKSESVVPPNYSEGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDI 777

Query: 781 VCDNAS 786
           +C ++S
Sbjct: 778 LCGDSS 783


>gi|13470082 protocadherin gamma subfamily B, 4 isoform 1 precursor
           [Homo sapiens]
          Length = 923

 Score = 1047 bits (2708), Expect = 0.0
 Identities = 535/786 (68%), Positives = 631/786 (80%), Gaps = 3/786 (0%)

Query: 1   MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60
           M + +G  G    L VL  FLLSLF  AL  QIRY IPEE+ K SVVGNLA DLG SV++
Sbjct: 1   MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60

Query: 61  LPARKLRVSAEKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA 120
           LP RKLRVS+EK YFTV+ ESG+LLVS R+DRE+ICGK+P C L+F+ VAENPLN +++ 
Sbjct: 61  LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120

Query: 121 VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL 180
           V ++DIND+TP F Q    L+I ES +PGT F L  A D+D+G N+LQ Y L+ +++F L
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSL 180

Query: 181 AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP 240
             K+  DG KYPE++LK  LDRE+   + L LTA+D G PP S T QI + VTDANDN P
Sbjct: 181 INKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAP 240

Query: 241 VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE 300
           VFSQDVYRV+L E+V PG  VLQVTATD+DEG+NAEIT+SF    +  +  F+LN  TGE
Sbjct: 241 VFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSFSEASQITQ--FDLNSNTGE 298

Query: 301 ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS 360
           IT  + LDFE    Y++ +EA+D G + A C+++VE++D+ND APEVI  S+   + ED+
Sbjct: 299 ITVLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDA 358

Query: 361 PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL 420
             GT IAL+K RD+DS  NGEV C++ G+  F + +SS+N YKLVTD  LDRE+ PEYN+
Sbjct: 359 ELGTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNI 418

Query: 421 TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD 480
           T+TATD GKPPLSSS  +TLHI DVNDNAPVF Q+SY+VHVAENNPPGASI+Q+ ASDPD
Sbjct: 419 TVTATDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPD 478

Query: 481 LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
           LGP+GQVSY I+ASDL+ RE+ SYVS+SA+SGVVFAQRAFDHEQLRAFELTLQARDQGSP
Sbjct: 479 LGPNGQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSP 538

Query: 541 ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 600
           ALSANVSLRVLV D NDNAPRVLYPALGPDGSALFDMVP AAEPGYLVTKVVAVDADSGH
Sbjct: 539 ALSANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGH 598

Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
           NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDA RQRLLVAVRDGGQPPLSATATL
Sbjct: 599 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATL 658

Query: 661 HLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSR 720
           HL+FADSLQEVLPD++DR +PSD QA+LQFYLVVALALISVLF +A+ILAI+LRLR SS 
Sbjct: 659 HLVFADSLQEVLPDITDRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSS 718

Query: 721 SDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDL 780
             +W CFQPGL  K    V PNYSEGTLPYSYNLCVA  + KTEFNFL  + +L   QD+
Sbjct: 719 PASWSCFQPGLCVKSESVVPPNYSEGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDI 777

Query: 781 VCDNAS 786
           +C ++S
Sbjct: 778 LCGDSS 783


>gi|14270496 protocadherin gamma subfamily B, 3 isoform 2 precursor
           [Homo sapiens]
          Length = 814

 Score = 1047 bits (2708), Expect = 0.0
 Identities = 545/811 (67%), Positives = 630/811 (77%), Gaps = 4/811 (0%)

Query: 1   MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60
           M  SSG  G     ++L  FLLSL    L   IRY+IPEEL + S+VGNLAKDLG  V D
Sbjct: 1   MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60

Query: 61  LPARKLRVSAEKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA 120
           LP R LRV AEK++FTV+PE+G+LLVSDRIDRE+ICGK+  CVL+F+ VAE PLN F++ 
Sbjct: 61  LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120

Query: 121 VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL 180
           V++QDINDN P F Q    L+I E    G TF L+ A D DVG NSLQ+Y+L+ + +F L
Sbjct: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180

Query: 181 AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP 240
            +K+  DG +YPEL+LK  LDREE   H LVLTAVDGG+P +S TTQIR+ V DANDNPP
Sbjct: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240

Query: 241 VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE 300
           VF+QD+YRV + E++P G  VL+V A D DEGINAEI Y+F N+ ++V+  F L+ KTGE
Sbjct: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300

Query: 301 ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS 360
           +TT  +LDFE   SYT+ +EAKD G   A+C +Q++I D+ND APE+ + S S  + ED+
Sbjct: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360

Query: 361 PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL 420
             GT +ALIKT D DSG NGE+ CQ+ GN  F +   +KN Y+LVTDGALDRE+IPEYN+
Sbjct: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420

Query: 421 TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD 480
           TITATD G PPLSSS  +TLHI DVNDN PVF Q SY VHVAENNPPGASIA + ASDPD
Sbjct: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480

Query: 481 LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
           LGP+G VSY IVASDL+PRE+ SYVSVSA+SGVVFAQRAFDHEQLRAFELTLQARDQGSP
Sbjct: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540

Query: 541 ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 600
            LSANVSLRVLV D NDNAP VLYPALGP+GSALFDMVPR+AEPGYLVTKVVAVDADSG+
Sbjct: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600

Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
           NAWLSYH++QASEPGLFSLGLRTGEVRTAR LGDR+AARQRLLV VRDGGQ PLSAT  L
Sbjct: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660

Query: 661 HLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSR 720
           HLIFADSLQE+ PDLSDR  PSDPQA+LQF+LVVALALISVLF LAVILAISLRLR SSR
Sbjct: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720

Query: 721 SDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDL 780
                 FQPG+  K  PGVLP YSE TLPYSYN C AS S+ TEF FLNI  E    QDL
Sbjct: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780

Query: 781 VCDNASW-EQNTNHGAAGVPFASDTILKVSF 810
           +CD ASW E N N     +P  S  + KVSF
Sbjct: 781 LCDEASWFESNDN---PEMPSNSGNLQKVSF 808


>gi|14270508 protocadherin gamma subfamily B, 7 isoform 2 precursor
           [Homo sapiens]
          Length = 808

 Score = 1045 bits (2702), Expect = 0.0
 Identities = 532/765 (69%), Positives = 612/765 (80%)

Query: 15  QVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAEKEY 74
           QVL P LL LF   L   IRYSIPEELAK SVVGNLAKDLGLSV D+ AR+LRVSAEK +
Sbjct: 15  QVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARELRVSAEKLH 74

Query: 75  FTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLFK 134
           F+V+ +SGDLLV DRIDREQIC ++  C L  + V ENPLNIF++ V+++D+ND+ P F+
Sbjct: 75  FSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFR 134

Query: 135 QTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPEL 194
           + +INL+I ES   G    L+ A D D+  NSL +Y L+ NEYF L EK  PDG KYPEL
Sbjct: 135 KDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSLVEKDNPDGGKYPEL 194

Query: 195 ILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLRED 254
           +L+ +LDRE  S H LVLTA+DGGDPP+SGT QIRI V DANDNPPVFSQDVYRV+LRED
Sbjct: 195 VLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVSLRED 254

Query: 255 VPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIASS 314
           VPPG  +L+V ATD+DEGIN+EITYSF  V ++ +H F+L+  TG I T+  LDFE    
Sbjct: 255 VPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGNILTQQPLDFEEVER 314

Query: 315 YTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTRDR 374
           YT++IEAKD G L+  C + VE++D+ND +PE+I+TS+S  + EDSPPG V+AL KTRD+
Sbjct: 315 YTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDSPPGVVVALFKTRDQ 374

Query: 375 DSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPLSS 434
           DSGENGEV C +     F + SSS NYYKLVTD ALDRE+ PEYN+TI ATD GKPPLSS
Sbjct: 375 DSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNVTIAATDRGKPPLSS 434

Query: 435 SIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIVAS 494
           S  +TLHI+DVNDNAPVF Q++Y+VHV ENN PGASIAQ+SASDPD G +G+VSYS++AS
Sbjct: 435 SKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPDFGLNGRVSYSLIAS 494

Query: 495 DLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 554
           DL+ R + SYVSVSAQSGVVFAQRAFDHEQLR FELTLQARDQGSPALSANVSLRVLVGD
Sbjct: 495 DLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSPALSANVSLRVLVGD 554

Query: 555 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 614
            NDNAPRVLYPALGPDGSALFD VPRAA+PGYLVTKVVAVDADSGHNAWLSYHV+QASEP
Sbjct: 555 RNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGHNAWLSYHVVQASEP 614

Query: 615 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 674
           GLFSLGLRTGEVR  RALGD+D+ RQRLLVAVRDGGQPPLSATATLHL+FADSLQEVLPD
Sbjct: 615 GLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPD 674

Query: 675 LSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPGLSSK 734
            SD   PSD QA++QFYLVVALALISVLF LAVILAI+LRLR S    A DCF+  L SK
Sbjct: 675 FSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFSPTAGDCFESVLCSK 734

Query: 735 PGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQD 779
            GP   PNYSEGTLPY+YN CV       EFNF          QD
Sbjct: 735 SGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHCPATQD 779


>gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precursor
           [Homo sapiens]
          Length = 929

 Score = 1045 bits (2702), Expect = 0.0
 Identities = 532/765 (69%), Positives = 612/765 (80%)

Query: 15  QVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAEKEY 74
           QVL P LL LF   L   IRYSIPEELAK SVVGNLAKDLGLSV D+ AR+LRVSAEK +
Sbjct: 15  QVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARELRVSAEKLH 74

Query: 75  FTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLFK 134
           F+V+ +SGDLLV DRIDREQIC ++  C L  + V ENPLNIF++ V+++D+ND+ P F+
Sbjct: 75  FSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFR 134

Query: 135 QTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPEL 194
           + +INL+I ES   G    L+ A D D+  NSL +Y L+ NEYF L EK  PDG KYPEL
Sbjct: 135 KDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSLVEKDNPDGGKYPEL 194

Query: 195 ILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLRED 254
           +L+ +LDRE  S H LVLTA+DGGDPP+SGT QIRI V DANDNPPVFSQDVYRV+LRED
Sbjct: 195 VLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVSLRED 254

Query: 255 VPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIASS 314
           VPPG  +L+V ATD+DEGIN+EITYSF  V ++ +H F+L+  TG I T+  LDFE    
Sbjct: 255 VPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGNILTQQPLDFEEVER 314

Query: 315 YTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTRDR 374
           YT++IEAKD G L+  C + VE++D+ND +PE+I+TS+S  + EDSPPG V+AL KTRD+
Sbjct: 315 YTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDSPPGVVVALFKTRDQ 374

Query: 375 DSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPLSS 434
           DSGENGEV C +     F + SSS NYYKLVTD ALDRE+ PEYN+TI ATD GKPPLSS
Sbjct: 375 DSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNVTIAATDRGKPPLSS 434

Query: 435 SIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIVAS 494
           S  +TLHI+DVNDNAPVF Q++Y+VHV ENN PGASIAQ+SASDPD G +G+VSYS++AS
Sbjct: 435 SKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPDFGLNGRVSYSLIAS 494

Query: 495 DLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 554
           DL+ R + SYVSVSAQSGVVFAQRAFDHEQLR FELTLQARDQGSPALSANVSLRVLVGD
Sbjct: 495 DLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSPALSANVSLRVLVGD 554

Query: 555 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 614
            NDNAPRVLYPALGPDGSALFD VPRAA+PGYLVTKVVAVDADSGHNAWLSYHV+QASEP
Sbjct: 555 RNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGHNAWLSYHVVQASEP 614

Query: 615 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 674
           GLFSLGLRTGEVR  RALGD+D+ RQRLLVAVRDGGQPPLSATATLHL+FADSLQEVLPD
Sbjct: 615 GLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPD 674

Query: 675 LSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPGLSSK 734
            SD   PSD QA++QFYLVVALALISVLF LAVILAI+LRLR S    A DCF+  L SK
Sbjct: 675 FSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFSPTAGDCFESVLCSK 734

Query: 735 PGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQD 779
            GP   PNYSEGTLPY+YN CV       EFNF          QD
Sbjct: 735 SGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHCPATQD 779


>gi|11128033 protocadherin gamma subfamily B, 3 isoform 1 precursor
           [Homo sapiens]
          Length = 929

 Score = 1044 bits (2699), Expect = 0.0
 Identities = 539/793 (67%), Positives = 622/793 (78%), Gaps = 1/793 (0%)

Query: 1   MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60
           M  SSG  G     ++L  FLLSL    L   IRY+IPEEL + S+VGNLAKDLG  V D
Sbjct: 1   MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60

Query: 61  LPARKLRVSAEKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA 120
           LP R LRV AEK++FTV+PE+G+LLVSDRIDRE+ICGK+  CVL+F+ VAE PLN F++ 
Sbjct: 61  LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120

Query: 121 VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL 180
           V++QDINDN P F Q    L+I E    G TF L+ A D DVG NSLQ+Y+L+ + +F L
Sbjct: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180

Query: 181 AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP 240
            +K+  DG +YPEL+LK  LDREE   H LVLTAVDGG+P +S TTQIR+ V DANDNPP
Sbjct: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240

Query: 241 VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE 300
           VF+QD+YRV + E++P G  VL+V A D DEGINAEI Y+F N+ ++V+  F L+ KTGE
Sbjct: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300

Query: 301 ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS 360
           +TT  +LDFE   SYT+ +EAKD G   A+C +Q++I D+ND APE+ + S S  + ED+
Sbjct: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360

Query: 361 PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL 420
             GT +ALIKT D DSG NGE+ CQ+ GN  F +   +KN Y+LVTDGALDRE+IPEYN+
Sbjct: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420

Query: 421 TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD 480
           TITATD G PPLSSS  +TLHI DVNDN PVF Q SY VHVAENNPPGASIA + ASDPD
Sbjct: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480

Query: 481 LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
           LGP+G VSY IVASDL+PRE+ SYVSVSA+SGVVFAQRAFDHEQLRAFELTLQARDQGSP
Sbjct: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540

Query: 541 ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 600
            LSANVSLRVLV D NDNAP VLYPALGP+GSALFDMVPR+AEPGYLVTKVVAVDADSG+
Sbjct: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600

Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
           NAWLSYH++QASEPGLFSLGLRTGEVRTAR LGDR+AARQRLLV VRDGGQ PLSAT  L
Sbjct: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660

Query: 661 HLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSR 720
           HLIFADSLQE+ PDLSDR  PSDPQA+LQF+LVVALALISVLF LAVILAISLRLR SSR
Sbjct: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720

Query: 721 SDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDL 780
                 FQPG+  K  PGVLP YSE TLPYSYN C AS S+ TEF FLNI  E    QDL
Sbjct: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780

Query: 781 VCDNASW-EQNTN 792
           +CD ASW E N N
Sbjct: 781 LCDEASWFESNDN 793


>gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precursor
           [Homo sapiens]
          Length = 932

 Score =  699 bits (1804), Expect = 0.0
 Identities = 365/725 (50%), Positives = 496/725 (68%), Gaps = 3/725 (0%)

Query: 15  QVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAE--K 72
           QVLL  LL    GA   QIRYSIPEEL K S VGN+ KDLGL  ++L    +R+ +    
Sbjct: 13  QVLLLTLLGTLWGAAAAQIRYSIPEELEKGSFVGNIVKDLGLEPQELAEHGVRIVSRGRM 72

Query: 73  EYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPL 132
           + F++NP +G L+ + RIDRE++C + P C++ F+ + E+ LN++ + V + DINDNTP 
Sbjct: 73  QLFSLNPRNGSLVTAGRIDREELCAQSPRCLVSFNILVEDKLNLYPVEVEIVDINDNTPR 132

Query: 133 FKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYP 192
           F + ++ +KI E+  P + FPL    D DVG NSLQ + L+ N +F +  +    G KYP
Sbjct: 133 FLKEELEVKILENAAPSSRFPLMEVYDPDVGMNSLQGFKLSGNSHFSVDVQSEAHGPKYP 192

Query: 193 ELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLR 252
           EL+L+ +LDRE  ++++LVLTA+DGGDP +S   QI + V D NDN P+F+Q VYRV++ 
Sbjct: 193 ELVLEGTLDREGEAVYRLVLTAMDGGDPVRSSVAQILVTVLDVNDNTPMFTQPVYRVSVP 252

Query: 253 EDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIA 312
           E++P G  VL VTATD+DEG++ E+TYSF  + E++   F LN  TGEI+T  +LD+E +
Sbjct: 253 ENLPVGTPVLAVTATDQDEGVHGEVTYSFVKITEKISQIFCLNVLTGEISTSANLDYEDS 312

Query: 313 SSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTR 372
           S Y L +EA+D   L     + + ILD ND  PEV+VTS S  + E +PPGTVIAL +  
Sbjct: 313 SFYELGVEARDGPGLRDRAKVLITILDVNDNVPEVVVTSGSRTIAESAPPGTVIALFQVF 372

Query: 373 DRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPL 432
           DRDSG NG V C +  +  F L+ S  NYY+LVT+ ALDREE+  YN+T+TATD G PPL
Sbjct: 373 DRDSGLNGLVTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYNITVTATDKGTPPL 432

Query: 433 SSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIV 492
           S+  I++L+++D NDN P F  +SY V+V ENNP GASI  ++A DPD+  + QVSYS+ 
Sbjct: 433 STETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDPDVDQNAQVSYSLA 492

Query: 493 ASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLV 552
              L+   + SYVS+++ +G+++A R+FD+EQLR  +L + A D G P LS+NVSL + V
Sbjct: 493 EDTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTASDSGDPPLSSNVSLSLFV 552

Query: 553 GDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQAS 612
            D NDNAP +LYPAL  DGS   ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L+AS
Sbjct: 553 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKAS 612

Query: 613 EPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVL 672
           EPGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL +  AD + ++L
Sbjct: 613 EPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDIL 672

Query: 673 PDLSDRREPSDP-QAKLQFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPGL 731
            DL      + P  + L  YLVVA+A +S +F   VI+ ++LRL+   +S        GL
Sbjct: 673 ADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLQRWHKSRLLQASGGGL 732

Query: 732 SSKPG 736
           +S PG
Sbjct: 733 ASMPG 737


>gi|14196474 protocadherin gamma subfamily A, 6 isoform 2 precursor
           [Homo sapiens]
          Length = 818

 Score =  699 bits (1804), Expect = 0.0
 Identities = 365/725 (50%), Positives = 496/725 (68%), Gaps = 3/725 (0%)

Query: 15  QVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAE--K 72
           QVLL  LL    GA   QIRYSIPEEL K S VGN+ KDLGL  ++L    +R+ +    
Sbjct: 13  QVLLLTLLGTLWGAAAAQIRYSIPEELEKGSFVGNIVKDLGLEPQELAEHGVRIVSRGRM 72

Query: 73  EYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPL 132
           + F++NP +G L+ + RIDRE++C + P C++ F+ + E+ LN++ + V + DINDNTP 
Sbjct: 73  QLFSLNPRNGSLVTAGRIDREELCAQSPRCLVSFNILVEDKLNLYPVEVEIVDINDNTPR 132

Query: 133 FKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYP 192
           F + ++ +KI E+  P + FPL    D DVG NSLQ + L+ N +F +  +    G KYP
Sbjct: 133 FLKEELEVKILENAAPSSRFPLMEVYDPDVGMNSLQGFKLSGNSHFSVDVQSEAHGPKYP 192

Query: 193 ELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLR 252
           EL+L+ +LDRE  ++++LVLTA+DGGDP +S   QI + V D NDN P+F+Q VYRV++ 
Sbjct: 193 ELVLEGTLDREGEAVYRLVLTAMDGGDPVRSSVAQILVTVLDVNDNTPMFTQPVYRVSVP 252

Query: 253 EDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIA 312
           E++P G  VL VTATD+DEG++ E+TYSF  + E++   F LN  TGEI+T  +LD+E +
Sbjct: 253 ENLPVGTPVLAVTATDQDEGVHGEVTYSFVKITEKISQIFCLNVLTGEISTSANLDYEDS 312

Query: 313 SSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTR 372
           S Y L +EA+D   L     + + ILD ND  PEV+VTS S  + E +PPGTVIAL +  
Sbjct: 313 SFYELGVEARDGPGLRDRAKVLITILDVNDNVPEVVVTSGSRTIAESAPPGTVIALFQVF 372

Query: 373 DRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPL 432
           DRDSG NG V C +  +  F L+ S  NYY+LVT+ ALDREE+  YN+T+TATD G PPL
Sbjct: 373 DRDSGLNGLVTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYNITVTATDKGTPPL 432

Query: 433 SSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIV 492
           S+  I++L+++D NDN P F  +SY V+V ENNP GASI  ++A DPD+  + QVSYS+ 
Sbjct: 433 STETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDPDVDQNAQVSYSLA 492

Query: 493 ASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLV 552
              L+   + SYVS+++ +G+++A R+FD+EQLR  +L + A D G P LS+NVSL + V
Sbjct: 493 EDTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTASDSGDPPLSSNVSLSLFV 552

Query: 553 GDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQAS 612
            D NDNAP +LYPAL  DGS   ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L+AS
Sbjct: 553 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKAS 612

Query: 613 EPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVL 672
           EPGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL +  AD + ++L
Sbjct: 613 EPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDIL 672

Query: 673 PDLSDRREPSDP-QAKLQFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPGL 731
            DL      + P  + L  YLVVA+A +S +F   VI+ ++LRL+   +S        GL
Sbjct: 673 ADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLQRWHKSRLLQASGGGL 732

Query: 732 SSKPG 736
           +S PG
Sbjct: 733 ASMPG 737


>gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precursor
           [Homo sapiens]
          Length = 932

 Score =  691 bits (1783), Expect = 0.0
 Identities = 352/708 (49%), Positives = 483/708 (68%), Gaps = 3/708 (0%)

Query: 32  QIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAE--KEYFTVNPESGDLLVSDR 89
           QIRYS+ EEL K S VGN+A DLGL  R+L  R +R+ +    + F++NP+SG L+ ++R
Sbjct: 30  QIRYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSRGRTQLFSLNPQSGSLVTAER 89

Query: 90  IDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLFKQTKINLKIGESTKPG 149
           IDRE++C + PLC++  + + E+ L IF + + ++DINDN P F   ++ +KIGE T PG
Sbjct: 90  IDREELCAQIPLCLVKINILVEDKLKIFEVEIEIKDINDNAPNFPTEELEIKIGELTVPG 149

Query: 150 TTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPELILKHSLDREEHSLHQ 209
           T FP+  A D DVG NSLQ Y L+ N+YF LA     +G KYPEL+L+ +LDRE+  +HQ
Sbjct: 150 TRFPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGAKYPELVLERALDREKKEIHQ 209

Query: 210 LVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLREDVPPGFFVLQVTATDR 269
           LVL A DGGDP  SG   I++ V DANDNPP+F+Q  YRV++ E+VP G  +L V ATD 
Sbjct: 210 LVLVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRVSVWENVPVGTRLLTVNATDP 269

Query: 270 DEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIASSYTLSIEAKDPGDLAA 329
           DEG NA+++Y    +  ++   F+LN  +GE++    LD+E A  Y + IEA+D   L +
Sbjct: 270 DEGFNAQVSYILDKMPGKIAEIFHLNSVSGEVSILKSLDYEDAMFYEIKIEAQDGPGLLS 329

Query: 330 HCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTRDRDSGENGEVYCQVLGN 389
              I V +LD ND APE+ +TS+++ +PE+   G  IALI   DRDSG+NG+V   VLGN
Sbjct: 330 RAKILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIALIDVHDRDSGQNGQVEVFVLGN 389

Query: 390 AKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPLSSSIIVTLHISDVNDNA 449
             F L+ S   YY+LVT  +LDRE+I EYN+++ A+DGG PPLS+   +TLH+ D+NDN 
Sbjct: 390 LPFKLEKSIDQYYRLVTATSLDREQISEYNISLRASDGGSPPLSTETHITLHVIDINDNP 449

Query: 450 PVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIVASDLKPREILSYVSVSA 509
           P F   SY  ++ ENNP GASI  ++A DPD   + +++Y++    L+   + S+VS+++
Sbjct: 450 PTFPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARITYALTEDTLQGAPLSSFVSINS 509

Query: 510 QSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLNDNAPRVLYPALGP 569
            +GV++A R+FD+EQ R  +L + A D G+P LS+NVSL + V D NDNAP +LYPAL  
Sbjct: 510 NTGVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLNLFVLDQNDNAPEILYPALPT 569

Query: 570 DGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRTA 629
           DGS   ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L+ASEPGLFS+GL TGEVRTA
Sbjct: 570 DGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTA 629

Query: 630 RALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDLSDRREPSDP-QAKL 688
           RAL DRDA +Q L+VAV+D GQPPLSAT TL +  AD + ++L DL      + P  + L
Sbjct: 630 RALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDILADLGSLEPSAKPNDSDL 689

Query: 689 QFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPGLSSKPG 736
             YLVVA+A +S +F   VI+ ++LRLR   +S        GL+S PG
Sbjct: 690 TLYLVVAVAAVSCVFLAFVIVLLALRLRRWHKSRLLQASGGGLASTPG 737


>gi|14196465 protocadherin gamma subfamily A, 3 isoform 2 precursor
           [Homo sapiens]
          Length = 829

 Score =  691 bits (1783), Expect = 0.0
 Identities = 352/708 (49%), Positives = 483/708 (68%), Gaps = 3/708 (0%)

Query: 32  QIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAE--KEYFTVNPESGDLLVSDR 89
           QIRYS+ EEL K S VGN+A DLGL  R+L  R +R+ +    + F++NP+SG L+ ++R
Sbjct: 30  QIRYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSRGRTQLFSLNPQSGSLVTAER 89

Query: 90  IDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLFKQTKINLKIGESTKPG 149
           IDRE++C + PLC++  + + E+ L IF + + ++DINDN P F   ++ +KIGE T PG
Sbjct: 90  IDREELCAQIPLCLVKINILVEDKLKIFEVEIEIKDINDNAPNFPTEELEIKIGELTVPG 149

Query: 150 TTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPELILKHSLDREEHSLHQ 209
           T FP+  A D DVG NSLQ Y L+ N+YF LA     +G KYPEL+L+ +LDRE+  +HQ
Sbjct: 150 TRFPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGAKYPELVLERALDREKKEIHQ 209

Query: 210 LVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLREDVPPGFFVLQVTATDR 269
           LVL A DGGDP  SG   I++ V DANDNPP+F+Q  YRV++ E+VP G  +L V ATD 
Sbjct: 210 LVLVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRVSVWENVPVGTRLLTVNATDP 269

Query: 270 DEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIASSYTLSIEAKDPGDLAA 329
           DEG NA+++Y    +  ++   F+LN  +GE++    LD+E A  Y + IEA+D   L +
Sbjct: 270 DEGFNAQVSYILDKMPGKIAEIFHLNSVSGEVSILKSLDYEDAMFYEIKIEAQDGPGLLS 329

Query: 330 HCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTRDRDSGENGEVYCQVLGN 389
              I V +LD ND APE+ +TS+++ +PE+   G  IALI   DRDSG+NG+V   VLGN
Sbjct: 330 RAKILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIALIDVHDRDSGQNGQVEVFVLGN 389

Query: 390 AKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPLSSSIIVTLHISDVNDNA 449
             F L+ S   YY+LVT  +LDRE+I EYN+++ A+DGG PPLS+   +TLH+ D+NDN 
Sbjct: 390 LPFKLEKSIDQYYRLVTATSLDREQISEYNISLRASDGGSPPLSTETHITLHVIDINDNP 449

Query: 450 PVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIVASDLKPREILSYVSVSA 509
           P F   SY  ++ ENNP GASI  ++A DPD   + +++Y++    L+   + S+VS+++
Sbjct: 450 PTFPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARITYALTEDTLQGAPLSSFVSINS 509

Query: 510 QSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLNDNAPRVLYPALGP 569
            +GV++A R+FD+EQ R  +L + A D G+P LS+NVSL + V D NDNAP +LYPAL  
Sbjct: 510 NTGVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLNLFVLDQNDNAPEILYPALPT 569

Query: 570 DGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRTA 629
           DGS   ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L+ASEPGLFS+GL TGEVRTA
Sbjct: 570 DGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTA 629

Query: 630 RALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDLSDRREPSDP-QAKL 688
           RAL DRDA +Q L+VAV+D GQPPLSAT TL +  AD + ++L DL      + P  + L
Sbjct: 630 RALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDILADLGSLEPSAKPNDSDL 689

Query: 689 QFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPGLSSKPG 736
             YLVVA+A +S +F   VI+ ++LRLR   +S        GL+S PG
Sbjct: 690 TLYLVVAVAAVSCVFLAFVIVLLALRLRRWHKSRLLQASGGGLASTPG 737


>gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precursor
           [Homo sapiens]
          Length = 932

 Score =  687 bits (1772), Expect = 0.0
 Identities = 358/757 (47%), Positives = 498/757 (65%), Gaps = 5/757 (0%)

Query: 16  VLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRV--SAEKE 73
           VLL  LL         QIRYS+PEEL K S VG++++DLGL  R+L  R +R+      +
Sbjct: 14  VLLGILLGTLWETGCTQIRYSVPEELEKGSRVGDISRDLGLEPRELAERGVRIIPRGRTQ 73

Query: 74  YFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLF 133
            F +NP SG L+ + RIDRE++C     C L+ D + E+ + I+ + V V+DINDN P F
Sbjct: 74  LFALNPRSGSLVTAGRIDREELCMGAIKCQLNLDILMEDKVKIYGVEVEVRDINDNAPYF 133

Query: 134 KQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPE 193
           +++++ +KI E+      FPL  A D D+G NSLQ Y L+ N +F L  +   DG KYPE
Sbjct: 134 RESELEIKISENAATEMRFPLPHAWDPDIGKNSLQSYELSPNTHFSLIVQNGADGSKYPE 193

Query: 194 LILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLRE 253
           L+LK +LDREE + H LVLTA DGGDP ++GT +IR+ V DANDN P F+Q  YR ++ E
Sbjct: 194 LVLKRALDREEKAAHHLVLTASDGGDPVRTGTARIRVMVLDANDNAPAFAQPEYRASVPE 253

Query: 254 DVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIAS 313
           ++  G  +L V ATD DEG+NAE+ YSF  VD++    F L+  +G I+T  +LD E + 
Sbjct: 254 NLALGTQLLVVNATDPDEGVNAEVRYSFRYVDDKAAQVFKLDCNSGTISTIGELDHEESG 313

Query: 314 SYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTRD 373
            Y + ++A D    +A   + + +LD ND APEV++TS+++ +PE+SP GT+IAL+   D
Sbjct: 314 FYQMEVQAMDNAGYSARAKVLITVLDVNDNAPEVVLTSLASSVPENSPRGTLIALLNVND 373

Query: 374 RDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPLS 433
           +DS ENG+V C + GN  F L+ S  NYY LVTD  LDRE++P YN+T+TATD G PPLS
Sbjct: 374 QDSEENGQVICFIQGNLPFKLEKSYGNYYSLVTDIVLDREQVPSYNITVTATDRGTPPLS 433

Query: 434 SSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIVA 493
           +   ++L+++D NDN PVF Q SY  ++ ENNP G S+  ++A DPD   + Q++YS+  
Sbjct: 434 TETHISLNVADTNDNPPVFPQASYSAYIPENNPRGVSLVSVTAHDPDCEENAQITYSLAE 493

Query: 494 SDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVG 553
           + ++   + SYVS+++ +GV++A  +FD+EQ R  ++ + ARD G P LS+NVSL + V 
Sbjct: 494 NTIQGASLSSYVSINSDTGVLYALSSFDYEQFRDLQVKVMARDNGHPPLSSNVSLSLFVL 553

Query: 554 DLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASE 613
           D NDNAP +LYPAL  DGS   ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L+ASE
Sbjct: 554 DQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASE 613

Query: 614 PGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLP 673
           PGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL +  ADS+ +VL 
Sbjct: 614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPQVLA 673

Query: 674 DLSDRREPSDPQ-AKLQFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPGLS 732
           DL     P++ + + L  YLVVA+A +S +F   VIL ++LRLR   +S        GL+
Sbjct: 674 DLGSLESPANSETSDLTLYLVVAVAAVSCVFLAFVILLLALRLRRWHKSRLLQASGGGLT 733

Query: 733 SKPGPGV--LPNYSEGTLPYSYNLCVASQSAKTEFNF 767
             P      +         YS+ + + + S K+   F
Sbjct: 734 GAPASHFVGVDGVQAFLQTYSHEVSLTTDSRKSHLIF 770


>gi|14196457 protocadherin gamma subfamily A, 12 isoform 2 precursor
           [Homo sapiens]
          Length = 820

 Score =  687 bits (1772), Expect = 0.0
 Identities = 358/757 (47%), Positives = 498/757 (65%), Gaps = 5/757 (0%)

Query: 16  VLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRV--SAEKE 73
           VLL  LL         QIRYS+PEEL K S VG++++DLGL  R+L  R +R+      +
Sbjct: 14  VLLGILLGTLWETGCTQIRYSVPEELEKGSRVGDISRDLGLEPRELAERGVRIIPRGRTQ 73

Query: 74  YFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLF 133
            F +NP SG L+ + RIDRE++C     C L+ D + E+ + I+ + V V+DINDN P F
Sbjct: 74  LFALNPRSGSLVTAGRIDREELCMGAIKCQLNLDILMEDKVKIYGVEVEVRDINDNAPYF 133

Query: 134 KQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPE 193
           +++++ +KI E+      FPL  A D D+G NSLQ Y L+ N +F L  +   DG KYPE
Sbjct: 134 RESELEIKISENAATEMRFPLPHAWDPDIGKNSLQSYELSPNTHFSLIVQNGADGSKYPE 193

Query: 194 LILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLRE 253
           L+LK +LDREE + H LVLTA DGGDP ++GT +IR+ V DANDN P F+Q  YR ++ E
Sbjct: 194 LVLKRALDREEKAAHHLVLTASDGGDPVRTGTARIRVMVLDANDNAPAFAQPEYRASVPE 253

Query: 254 DVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIAS 313
           ++  G  +L V ATD DEG+NAE+ YSF  VD++    F L+  +G I+T  +LD E + 
Sbjct: 254 NLALGTQLLVVNATDPDEGVNAEVRYSFRYVDDKAAQVFKLDCNSGTISTIGELDHEESG 313

Query: 314 SYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTRD 373
            Y + ++A D    +A   + + +LD ND APEV++TS+++ +PE+SP GT+IAL+   D
Sbjct: 314 FYQMEVQAMDNAGYSARAKVLITVLDVNDNAPEVVLTSLASSVPENSPRGTLIALLNVND 373

Query: 374 RDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPLS 433
           +DS ENG+V C + GN  F L+ S  NYY LVTD  LDRE++P YN+T+TATD G PPLS
Sbjct: 374 QDSEENGQVICFIQGNLPFKLEKSYGNYYSLVTDIVLDREQVPSYNITVTATDRGTPPLS 433

Query: 434 SSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIVA 493
           +   ++L+++D NDN PVF Q SY  ++ ENNP G S+  ++A DPD   + Q++YS+  
Sbjct: 434 TETHISLNVADTNDNPPVFPQASYSAYIPENNPRGVSLVSVTAHDPDCEENAQITYSLAE 493

Query: 494 SDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVG 553
           + ++   + SYVS+++ +GV++A  +FD+EQ R  ++ + ARD G P LS+NVSL + V 
Sbjct: 494 NTIQGASLSSYVSINSDTGVLYALSSFDYEQFRDLQVKVMARDNGHPPLSSNVSLSLFVL 553

Query: 554 DLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASE 613
           D NDNAP +LYPAL  DGS   ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L+ASE
Sbjct: 554 DQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASE 613

Query: 614 PGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLP 673
           PGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL +  ADS+ +VL 
Sbjct: 614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPQVLA 673

Query: 674 DLSDRREPSDPQ-AKLQFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPGLS 732
           DL     P++ + + L  YLVVA+A +S +F   VIL ++LRLR   +S        GL+
Sbjct: 674 DLGSLESPANSETSDLTLYLVVAVAAVSCVFLAFVILLLALRLRRWHKSRLLQASGGGLT 733

Query: 733 SKPGPGV--LPNYSEGTLPYSYNLCVASQSAKTEFNF 767
             P      +         YS+ + + + S K+   F
Sbjct: 734 GAPASHFVGVDGVQAFLQTYSHEVSLTTDSRKSHLIF 770


>gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precursor
           [Homo sapiens]
          Length = 932

 Score =  683 bits (1762), Expect = 0.0
 Identities = 354/736 (48%), Positives = 490/736 (66%), Gaps = 4/736 (0%)

Query: 3   ASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLP 62
           A+  +C L R   VLL  LL +   A   QIRYS+PEE  K  +VGN++KDL L  R+L 
Sbjct: 2   AAPTKCQL-RGRLVLLCSLLGMLWEARASQIRYSVPEETEKGYIVGNISKDLALEPRELA 60

Query: 63  ARKLRVSAE--KEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA 120
            R++R+ +    + F++NP SG L+ + RIDRE++C + P C+++F  + E+ + ++ I 
Sbjct: 61  ERRVRIVSRGRTQLFSLNPRSGTLVTAGRIDREELCAQSPRCLVNFKVLVEDRVKLYGIE 120

Query: 121 VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL 180
           + V DIND+ P F+   + +KI E   PG  +PL  A+D DVG NSLQ Y L+ N +F L
Sbjct: 121 IEVTDINDSAPKFQAESLEVKINEIAVPGARYPLPEAIDPDVGVNSLQSYQLSPNHHFSL 180

Query: 181 AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP 240
             +   +G   PEL+L+ +LDREE + H LVLTA DGG+P +S T +I + V D NDN P
Sbjct: 181 NVQTGDNGAINPELVLERALDREEATAHHLVLTASDGGEPRRSSTVRIHVTVLDTNDNAP 240

Query: 241 VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE 300
           VF+Q +YRV + E+VPPG ++L  TA+D DEGIN ++ Y F  ++E+    F LNE TGE
Sbjct: 241 VFAQRIYRVKVLENVPPGTWLLTATASDLDEGINGKVAYKFWKINEKQSLLFQLNENTGE 300

Query: 301 ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS 360
           I+T   LD+E  S Y + I+A+D G L     + + + D ND  PEV +TS+ +P+ ED+
Sbjct: 301 ISTAKSLDYEECSFYEMEIQAEDGGGLKGWTKVLISVEDVNDNRPEVTITSLFSPVREDA 360

Query: 361 PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL 420
           P GTVI L    DRDSG+NG+V C +  N  F L++S ++YY+L+T   LDRE+  EYN+
Sbjct: 361 PQGTVILLFNAHDRDSGKNGQVVCSIQENLSFTLENSEEDYYRLLTAQILDREKASEYNI 420

Query: 421 TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD 480
           T+TATD G PPLS+ I +TL ++D+NDN P F Q SY V++ ENN  G SI  + A DPD
Sbjct: 421 TVTATDRGTPPLSTEIHITLQVTDINDNPPAFSQASYSVYLPENNARGTSIFSVIAYDPD 480

Query: 481 LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
              + +V YS+    ++   + +YVS+++ +GV++A  +FD+EQ R  ++ + A D GSP
Sbjct: 481 SNENSRVIYSLAEDTIQGSPLSTYVSINSDTGVLYALCSFDYEQFRDLQMQVTASDSGSP 540

Query: 541 ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 600
            LS+NVSLR+ V D NDNAP +LYPAL  DGS   ++ PR+AEPGYLVTKVVAVD DSG 
Sbjct: 541 PLSSNVSLRLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQ 600

Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
           NAWLSY + +ASEPGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL
Sbjct: 601 NAWLSYRLFKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTL 660

Query: 661 HLIFADSLQEVLPDLSDRREPSDPQAK-LQFYLVVALALISVLFFLAVILAISLRLRLSS 719
            +  ADS+ ++L DL   + P+D +A  L  YLVVA+A++S +F   VI  ++LRLR   
Sbjct: 661 TVAIADSIPDILADLGSLQIPADLEASDLTLYLVVAVAVVSCVFLTFVITLLALRLRHWH 720

Query: 720 RSDAWDCFQPGLSSKP 735
            S        GL+  P
Sbjct: 721 SSHLLRATSDGLAGVP 736


>gi|14270487 protocadherin gamma subfamily A, 9 isoform 2 precursor
           [Homo sapiens]
          Length = 828

 Score =  683 bits (1762), Expect = 0.0
 Identities = 354/736 (48%), Positives = 490/736 (66%), Gaps = 4/736 (0%)

Query: 3   ASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLP 62
           A+  +C L R   VLL  LL +   A   QIRYS+PEE  K  +VGN++KDL L  R+L 
Sbjct: 2   AAPTKCQL-RGRLVLLCSLLGMLWEARASQIRYSVPEETEKGYIVGNISKDLALEPRELA 60

Query: 63  ARKLRVSAE--KEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA 120
            R++R+ +    + F++NP SG L+ + RIDRE++C + P C+++F  + E+ + ++ I 
Sbjct: 61  ERRVRIVSRGRTQLFSLNPRSGTLVTAGRIDREELCAQSPRCLVNFKVLVEDRVKLYGIE 120

Query: 121 VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL 180
           + V DIND+ P F+   + +KI E   PG  +PL  A+D DVG NSLQ Y L+ N +F L
Sbjct: 121 IEVTDINDSAPKFQAESLEVKINEIAVPGARYPLPEAIDPDVGVNSLQSYQLSPNHHFSL 180

Query: 181 AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP 240
             +   +G   PEL+L+ +LDREE + H LVLTA DGG+P +S T +I + V D NDN P
Sbjct: 181 NVQTGDNGAINPELVLERALDREEATAHHLVLTASDGGEPRRSSTVRIHVTVLDTNDNAP 240

Query: 241 VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE 300
           VF+Q +YRV + E+VPPG ++L  TA+D DEGIN ++ Y F  ++E+    F LNE TGE
Sbjct: 241 VFAQRIYRVKVLENVPPGTWLLTATASDLDEGINGKVAYKFWKINEKQSLLFQLNENTGE 300

Query: 301 ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS 360
           I+T   LD+E  S Y + I+A+D G L     + + + D ND  PEV +TS+ +P+ ED+
Sbjct: 301 ISTAKSLDYEECSFYEMEIQAEDGGGLKGWTKVLISVEDVNDNRPEVTITSLFSPVREDA 360

Query: 361 PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL 420
           P GTVI L    DRDSG+NG+V C +  N  F L++S ++YY+L+T   LDRE+  EYN+
Sbjct: 361 PQGTVILLFNAHDRDSGKNGQVVCSIQENLSFTLENSEEDYYRLLTAQILDREKASEYNI 420

Query: 421 TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD 480
           T+TATD G PPLS+ I +TL ++D+NDN P F Q SY V++ ENN  G SI  + A DPD
Sbjct: 421 TVTATDRGTPPLSTEIHITLQVTDINDNPPAFSQASYSVYLPENNARGTSIFSVIAYDPD 480

Query: 481 LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
              + +V YS+    ++   + +YVS+++ +GV++A  +FD+EQ R  ++ + A D GSP
Sbjct: 481 SNENSRVIYSLAEDTIQGSPLSTYVSINSDTGVLYALCSFDYEQFRDLQMQVTASDSGSP 540

Query: 541 ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 600
            LS+NVSLR+ V D NDNAP +LYPAL  DGS   ++ PR+AEPGYLVTKVVAVD DSG 
Sbjct: 541 PLSSNVSLRLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQ 600

Query: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
           NAWLSY + +ASEPGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL
Sbjct: 601 NAWLSYRLFKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTL 660

Query: 661 HLIFADSLQEVLPDLSDRREPSDPQAK-LQFYLVVALALISVLFFLAVILAISLRLRLSS 719
            +  ADS+ ++L DL   + P+D +A  L  YLVVA+A++S +F   VI  ++LRLR   
Sbjct: 661 TVAIADSIPDILADLGSLQIPADLEASDLTLYLVVAVAVVSCVFLTFVITLLALRLRHWH 720

Query: 720 RSDAWDCFQPGLSSKP 735
            S        GL+  P
Sbjct: 721 SSHLLRATSDGLAGVP 736


>gi|14196471 protocadherin gamma subfamily A, 5 isoform 2 precursor
           [Homo sapiens]
          Length = 813

 Score =  680 bits (1754), Expect = 0.0
 Identities = 354/708 (50%), Positives = 480/708 (67%), Gaps = 8/708 (1%)

Query: 15  QVLLPFLLS---LFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAE 71
           ++LLPF+L      PG+   QIRYS+PEEL K S VGN+AKDLGL  ++L  R +R+ + 
Sbjct: 12  ELLLPFMLLGTLCEPGS--GQIRYSMPEELDKGSFVGNIAKDLGLEPQELAERGVRIVSR 69

Query: 72  --KEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDN 129
              + F +NP SG L+ + RIDRE++C + PLCV++F+ + EN + I+ + V + DINDN
Sbjct: 70  GRTQLFALNPRSGSLVTAGRIDREELCAQSPLCVVNFNILVENKMKIYGVEVEIIDINDN 129

Query: 130 TPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGR 189
            P F+  ++ +K+ E+   GT   L  A D+DVG NSL+ Y L+ N +F L      DG+
Sbjct: 130 FPRFRDEELKVKVNENAAAGTRLVLPFARDADVGVNSLRSYQLSSNLHFSLDVVSGTDGQ 189

Query: 190 KYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRV 249
           KYPEL+L+  LDRE+ ++H L+LTA+DGGDP  SGTT IR+ V DANDN P+F+   Y V
Sbjct: 190 KYPELVLEQPLDREKETVHDLLLTALDGGDPVLSGTTHIRVTVLDANDNAPLFTPSEYSV 249

Query: 250 TLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDF 309
           ++ E++P G  +L +TATD DEGIN ++TYSF N +E++   F L+   GEI+T   LD+
Sbjct: 250 SVPENIPVGTRLLMLTATDPDEGINGKLTYSFRNEEEKISETFQLDSNLGEISTLQSLDY 309

Query: 310 EIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALI 369
           E +  Y + + A+D G L A   + V + D ND APEVI+TS+++ + ED  PGTVIAL 
Sbjct: 310 EESRFYLMEVVAQDGGALVASAKVVVTVQDVNDNAPEVILTSLTSSISEDCLPGTVIALF 369

Query: 370 KTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGK 429
              D DSGENGE+ C +  N  F L+ S  NYY L+T   LDREE  +YN+T+T  D G 
Sbjct: 370 SVHDGDSGENGEIACSIPRNLPFKLEKSVDNYYHLLTTRDLDREETSDYNITLTVMDHGT 429

Query: 430 PPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSY 489
           PPLS+   + L ++DVNDN P F Q SY   V ENNP G SI  ++A DPD G + +V+Y
Sbjct: 430 PPLSTESHIPLKVADVNDNPPNFPQASYSTSVTENNPRGVSIFSVTAHDPDSGDNARVTY 489

Query: 490 SIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLR 549
           S+     +   + SYVS+++ +GV++A R+FD+EQLR  +L + A D G+P LS+NVSL 
Sbjct: 490 SLAEDTFQGAPLSSYVSINSDTGVLYALRSFDYEQLRDLQLWVTASDSGNPPLSSNVSLS 549

Query: 550 VLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVL 609
           + V D NDN P +LYPAL  DGS   ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L
Sbjct: 550 LFVLDQNDNTPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLL 609

Query: 610 QASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQ 669
           +ASEPGLF++GL TGEVRTARAL DRDA +Q L+VAV D GQPPLSAT T+ +  AD + 
Sbjct: 610 KASEPGLFAVGLHTGEVRTARALLDRDALKQSLVVAVEDHGQPPLSATFTVTVAVADRIP 669

Query: 670 EVLPDLSDRREPSDPQ-AKLQFYLVVALALISVLFFLAVILAISLRLR 716
           ++L DL   + P DP+   L  YLVVA+A +S +F   VI+ + LRLR
Sbjct: 670 DILADLGSIKTPIDPEDLDLTLYLVVAVAAVSCVFLAFVIVLLVLRLR 717


>gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precursor
           [Homo sapiens]
          Length = 931

 Score =  680 bits (1754), Expect = 0.0
 Identities = 354/708 (50%), Positives = 480/708 (67%), Gaps = 8/708 (1%)

Query: 15  QVLLPFLLS---LFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAE 71
           ++LLPF+L      PG+   QIRYS+PEEL K S VGN+AKDLGL  ++L  R +R+ + 
Sbjct: 12  ELLLPFMLLGTLCEPGS--GQIRYSMPEELDKGSFVGNIAKDLGLEPQELAERGVRIVSR 69

Query: 72  --KEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDN 129
              + F +NP SG L+ + RIDRE++C + PLCV++F+ + EN + I+ + V + DINDN
Sbjct: 70  GRTQLFALNPRSGSLVTAGRIDREELCAQSPLCVVNFNILVENKMKIYGVEVEIIDINDN 129

Query: 130 TPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGR 189
            P F+  ++ +K+ E+   GT   L  A D+DVG NSL+ Y L+ N +F L      DG+
Sbjct: 130 FPRFRDEELKVKVNENAAAGTRLVLPFARDADVGVNSLRSYQLSSNLHFSLDVVSGTDGQ 189

Query: 190 KYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRV 249
           KYPEL+L+  LDRE+ ++H L+LTA+DGGDP  SGTT IR+ V DANDN P+F+   Y V
Sbjct: 190 KYPELVLEQPLDREKETVHDLLLTALDGGDPVLSGTTHIRVTVLDANDNAPLFTPSEYSV 249

Query: 250 TLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDF 309
           ++ E++P G  +L +TATD DEGIN ++TYSF N +E++   F L+   GEI+T   LD+
Sbjct: 250 SVPENIPVGTRLLMLTATDPDEGINGKLTYSFRNEEEKISETFQLDSNLGEISTLQSLDY 309

Query: 310 EIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALI 369
           E +  Y + + A+D G L A   + V + D ND APEVI+TS+++ + ED  PGTVIAL 
Sbjct: 310 EESRFYLMEVVAQDGGALVASAKVVVTVQDVNDNAPEVILTSLTSSISEDCLPGTVIALF 369

Query: 370 KTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGK 429
              D DSGENGE+ C +  N  F L+ S  NYY L+T   LDREE  +YN+T+T  D G 
Sbjct: 370 SVHDGDSGENGEIACSIPRNLPFKLEKSVDNYYHLLTTRDLDREETSDYNITLTVMDHGT 429

Query: 430 PPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSY 489
           PPLS+   + L ++DVNDN P F Q SY   V ENNP G SI  ++A DPD G + +V+Y
Sbjct: 430 PPLSTESHIPLKVADVNDNPPNFPQASYSTSVTENNPRGVSIFSVTAHDPDSGDNARVTY 489

Query: 490 SIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLR 549
           S+     +   + SYVS+++ +GV++A R+FD+EQLR  +L + A D G+P LS+NVSL 
Sbjct: 490 SLAEDTFQGAPLSSYVSINSDTGVLYALRSFDYEQLRDLQLWVTASDSGNPPLSSNVSLS 549

Query: 550 VLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVL 609
           + V D NDN P +LYPAL  DGS   ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L
Sbjct: 550 LFVLDQNDNTPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLL 609

Query: 610 QASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQ 669
           +ASEPGLF++GL TGEVRTARAL DRDA +Q L+VAV D GQPPLSAT T+ +  AD + 
Sbjct: 610 KASEPGLFAVGLHTGEVRTARALLDRDALKQSLVVAVEDHGQPPLSATFTVTVAVADRIP 669

Query: 670 EVLPDLSDRREPSDPQ-AKLQFYLVVALALISVLFFLAVILAISLRLR 716
           ++L DL   + P DP+   L  YLVVA+A +S +F   VI+ + LRLR
Sbjct: 670 DILADLGSIKTPIDPEDLDLTLYLVVAVAAVSCVFLAFVIVLLVLRLR 717


>gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precursor
           [Homo sapiens]
          Length = 931

 Score =  678 bits (1750), Expect = 0.0
 Identities = 356/739 (48%), Positives = 486/739 (65%), Gaps = 5/739 (0%)

Query: 1   MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60
           MK      G  R + + L   L L  GA    I YS+PEE  K S VGN+AKDLGL  ++
Sbjct: 1   MKIQKKLTGCSRLMLLCLSLELLLEAGA--GNIHYSVPEETDKGSFVGNIAKDLGLQPQE 58

Query: 61  LPARKLRVSAEKEY--FTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFY 118
           L    +R+ +      F +NP SG L+ + RIDRE++C +   C++ F+ + E+ + +F 
Sbjct: 59  LADGGVRIVSRGRMPLFALNPRSGSLITARRIDREELCAQSMPCLVSFNILVEDKMKLFP 118

Query: 119 IAVIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYF 178
           + V + DINDNTP F+  ++  K+ E T PGT   L    D DVG NSLQ Y L+ N +F
Sbjct: 119 VEVEIIDINDNTPQFQLEELEFKMNEITTPGTRVSLPFGQDLDVGMNSLQSYQLSSNPHF 178

Query: 179 DLAEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDN 238
            L  +Q  DG ++PE++L+  LDREE ++H L+LTA DGG+P +SGT +I I+V DANDN
Sbjct: 179 SLDVQQGADGPQHPEMVLQSPLDREEEAVHHLILTASDGGEPVRSGTLRIYIQVVDANDN 238

Query: 239 PPVFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKT 298
           PP F+Q  Y + + E+VP G  +L V ATD DEG N E+TYSFHNVD +V   F L+  T
Sbjct: 239 PPAFTQAQYHINVPENVPLGTQLLMVNATDPDEGANGEVTYSFHNVDHRVAQIFRLDSYT 298

Query: 299 GEITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPE 358
           GEI+ K+ LDFE    Y++ ++A+D   L A   + +++LD ND APEV +TSV+T +PE
Sbjct: 299 GEISNKEPLDFEEYKMYSMEVQAQDGAGLMAKVKVLIKVLDVNDNAPEVTITSVTTAVPE 358

Query: 359 DSPPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEY 418
           + PPGT+IALI   D+DSG+NG   C + GN  F L+    NYY+LVT+  LDRE I  Y
Sbjct: 359 NFPPGTIIALISVHDQDSGDNGYTTCFIPGNLPFKLEKLVDNYYRLVTERTLDRELISGY 418

Query: 419 NLTITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASD 478
           N+TITA D G P LS+   ++L ++D+NDN+PVF Q SY  ++ ENNP GASI  + A D
Sbjct: 419 NITITAIDQGTPALSTETHISLLVTDINDNSPVFHQDSYSAYIPENNPRGASIFSVRAHD 478

Query: 479 PDLGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQG 538
            D   + Q++YS++   ++   + +Y+S+++ +GV++A R+FD+EQ R  +L + ARD G
Sbjct: 479 LDSNENAQITYSLIEDTIQGAPLSAYLSINSDTGVLYALRSFDYEQFRDMQLKVMARDSG 538

Query: 539 SPALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADS 598
            P LS+NVSL + + D NDNAP +LYPAL  DGS   ++ P +AEPGYLVTKVVAVD DS
Sbjct: 539 DPPLSSNVSLSLFLLDQNDNAPEILYPALPTDGSTGVELAPLSAEPGYLVTKVVAVDRDS 598

Query: 599 GHNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATA 658
           G NAWLSY +L+ASEPGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT 
Sbjct: 599 GQNAWLSYRLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATV 658

Query: 659 TLHLIFADSLQEVLPDLSDRREPSDP-QAKLQFYLVVALALISVLFFLAVILAISLRLRL 717
           TL +  AD + ++L DL      + P  + L  YLVVA A +S +F   VI+ ++ RLR 
Sbjct: 659 TLTVAVADRISDILADLGSLEPSAKPNDSDLTLYLVVAAAAVSCVFLAFVIVLLAHRLRR 718

Query: 718 SSRSDAWDCFQPGLSSKPG 736
             +S        GL+S PG
Sbjct: 719 WHKSRLLQASGGGLASMPG 737


>gi|14196459 protocadherin gamma subfamily A, 1 isoform 2 precursor
           [Homo sapiens]
          Length = 823

 Score =  678 bits (1750), Expect = 0.0
 Identities = 356/739 (48%), Positives = 486/739 (65%), Gaps = 5/739 (0%)

Query: 1   MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60
           MK      G  R + + L   L L  GA    I YS+PEE  K S VGN+AKDLGL  ++
Sbjct: 1   MKIQKKLTGCSRLMLLCLSLELLLEAGA--GNIHYSVPEETDKGSFVGNIAKDLGLQPQE 58

Query: 61  LPARKLRVSAEKEY--FTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFY 118
           L    +R+ +      F +NP SG L+ + RIDRE++C +   C++ F+ + E+ + +F 
Sbjct: 59  LADGGVRIVSRGRMPLFALNPRSGSLITARRIDREELCAQSMPCLVSFNILVEDKMKLFP 118

Query: 119 IAVIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYF 178
           + V + DINDNTP F+  ++  K+ E T PGT   L    D DVG NSLQ Y L+ N +F
Sbjct: 119 VEVEIIDINDNTPQFQLEELEFKMNEITTPGTRVSLPFGQDLDVGMNSLQSYQLSSNPHF 178

Query: 179 DLAEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDN 238
            L  +Q  DG ++PE++L+  LDREE ++H L+LTA DGG+P +SGT +I I+V DANDN
Sbjct: 179 SLDVQQGADGPQHPEMVLQSPLDREEEAVHHLILTASDGGEPVRSGTLRIYIQVVDANDN 238

Query: 239 PPVFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKT 298
           PP F+Q  Y + + E+VP G  +L V ATD DEG N E+TYSFHNVD +V   F L+  T
Sbjct: 239 PPAFTQAQYHINVPENVPLGTQLLMVNATDPDEGANGEVTYSFHNVDHRVAQIFRLDSYT 298

Query: 299 GEITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPE 358
           GEI+ K+ LDFE    Y++ ++A+D   L A   + +++LD ND APEV +TSV+T +PE
Sbjct: 299 GEISNKEPLDFEEYKMYSMEVQAQDGAGLMAKVKVLIKVLDVNDNAPEVTITSVTTAVPE 358

Query: 359 DSPPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEY 418
           + PPGT+IALI   D+DSG+NG   C + GN  F L+    NYY+LVT+  LDRE I  Y
Sbjct: 359 NFPPGTIIALISVHDQDSGDNGYTTCFIPGNLPFKLEKLVDNYYRLVTERTLDRELISGY 418

Query: 419 NLTITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASD 478
           N+TITA D G P LS+   ++L ++D+NDN+PVF Q SY  ++ ENNP GASI  + A D
Sbjct: 419 NITITAIDQGTPALSTETHISLLVTDINDNSPVFHQDSYSAYIPENNPRGASIFSVRAHD 478

Query: 479 PDLGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQG 538
            D   + Q++YS++   ++   + +Y+S+++ +GV++A R+FD+EQ R  +L + ARD G
Sbjct: 479 LDSNENAQITYSLIEDTIQGAPLSAYLSINSDTGVLYALRSFDYEQFRDMQLKVMARDSG 538

Query: 539 SPALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADS 598
            P LS+NVSL + + D NDNAP +LYPAL  DGS   ++ P +AEPGYLVTKVVAVD DS
Sbjct: 539 DPPLSSNVSLSLFLLDQNDNAPEILYPALPTDGSTGVELAPLSAEPGYLVTKVVAVDRDS 598

Query: 599 GHNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATA 658
           G NAWLSY +L+ASEPGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT 
Sbjct: 599 GQNAWLSYRLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATV 658

Query: 659 TLHLIFADSLQEVLPDLSDRREPSDP-QAKLQFYLVVALALISVLFFLAVILAISLRLRL 717
           TL +  AD + ++L DL      + P  + L  YLVVA A +S +F   VI+ ++ RLR 
Sbjct: 659 TLTVAVADRISDILADLGSLEPSAKPNDSDLTLYLVVAAAAVSCVFLAFVIVLLAHRLRR 718

Query: 718 SSRSDAWDCFQPGLSSKPG 736
             +S        GL+S PG
Sbjct: 719 WHKSRLLQASGGGLASMPG 737


>gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precursor
           [Homo sapiens]
          Length = 932

 Score =  674 bits (1738), Expect = 0.0
 Identities = 372/782 (47%), Positives = 507/782 (64%), Gaps = 18/782 (2%)

Query: 20  FLLSLFPG----ALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAE--KE 73
           FLLS+  G    A   +I YS+ EE  K S VG++AKDLGL  R+L  R +R+ +    +
Sbjct: 14  FLLSILLGTPWEAWAGRILYSVSEETDKGSFVGDIAKDLGLEPRELAERGVRIISRGRTQ 73

Query: 74  YFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLF 133
            F +N  SG L+ + RIDRE+IC +   C+++F+ + E+ +N++ I V + DINDN P F
Sbjct: 74  LFALNQRSGSLVTAGRIDREEICAQSARCLVNFNILMEDKMNLYPIDVEIIDINDNVPRF 133

Query: 134 KQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPE 193
              +IN+KI E+T PG  FPL  A D DVG NSLQ Y L+ N +F LA +   D  KYPE
Sbjct: 134 LTEEINVKIMENTAPGVRFPLSEAGDPDVGTNSLQSYQLSPNRHFSLAVQSGDDETKYPE 193

Query: 194 LILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLRE 253
           L+L+  LDREE  +H LVLTA DGGDPP+S T  I++ V D ND+ PVFS   Y+VT+ E
Sbjct: 194 LVLERVLDREEERVHHLVLTASDGGDPPRSSTAHIQVTVVDVNDHTPVFSLPQYQVTVPE 253

Query: 254 DVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIAS 313
           +VP G  +L V A D DEG+N E+TYSF  +  ++   F+LN  TGEI+T + LD+E  +
Sbjct: 254 NVPVGTRLLTVHAIDLDEGVNGEVTYSFRKITPKLPKMFHLNSLTGEISTLEGLDYEETA 313

Query: 314 SYTLSIEAKD-PGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTR 372
            Y + ++A+D PG L     + + +LD ND APEV +TS+S+ +PED+P GTVIAL   +
Sbjct: 314 FYEMEVQAQDGPGSLTK-AKVLITVLDVNDNAPEVTMTSLSSSIPEDTPLGTVIALFYLQ 372

Query: 373 DRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPL 432
           DRDSG+NGEV C +  N  F L+ S  NYY+LVT   LDRE +  YN+T+ ATDGG PPL
Sbjct: 373 DRDSGKNGEVTCTIPENLPFKLEKSIDNYYRLVTTKNLDRETLSLYNITLKATDGGTPPL 432

Query: 433 SSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIV 492
           S    + + ++D NDN P F  +SY V++AENNP GASI  ++A D D   + Q++YS+ 
Sbjct: 433 SRETHIFMQVADTNDNPPTFPHSSYSVYIAENNPRGASIFLVTAQDHDSEDNAQITYSLA 492

Query: 493 ASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLV 552
              ++   + SYVS+++ +GV++A ++FD+EQLR  +L + A D G P LS+N+SL + V
Sbjct: 493 EDTIQGAPVSSYVSINSDTGVLYALQSFDYEQLRELQLRVTAHDSGDPPLSSNMSLSLFV 552

Query: 553 GDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQAS 612
            D NDN P +LYPAL  DGS   ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L+AS
Sbjct: 553 LDQNDNPPEILYPALPTDGSTGMELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYLLLKAS 612

Query: 613 EPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVL 672
           EPGLF++GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL +  ADS+ EVL
Sbjct: 613 EPGLFAVGLYTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVL 672

Query: 673 PDLSDRREPSDP--QAKLQFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPG 730
            DL    EPSD      L  YLVVA+A +S +F   V++ ++LRLR   +S      + G
Sbjct: 673 ADLGS-LEPSDGPYNYDLTLYLVVAVATVSCVFLAFVLVLLALRLRRWHKSRLLQASEGG 731

Query: 731 LSSKPGPGV--LPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDLVCDNASWE 788
           L++ P      +         YS+ + + + S K+   F    P  V   D++    S E
Sbjct: 732 LANVPTSHFVGMDGVQAFLQTYSHEVSLTADSRKSHLIFPQ--PNYV---DMLISQESCE 786

Query: 789 QN 790
           +N
Sbjct: 787 KN 788


>gi|14196477 protocadherin gamma subfamily A, 7 isoform 2 precursor
           [Homo sapiens]
          Length = 817

 Score =  674 bits (1738), Expect = 0.0
 Identities = 372/782 (47%), Positives = 507/782 (64%), Gaps = 18/782 (2%)

Query: 20  FLLSLFPG----ALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAE--KE 73
           FLLS+  G    A   +I YS+ EE  K S VG++AKDLGL  R+L  R +R+ +    +
Sbjct: 14  FLLSILLGTPWEAWAGRILYSVSEETDKGSFVGDIAKDLGLEPRELAERGVRIISRGRTQ 73

Query: 74  YFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLF 133
            F +N  SG L+ + RIDRE+IC +   C+++F+ + E+ +N++ I V + DINDN P F
Sbjct: 74  LFALNQRSGSLVTAGRIDREEICAQSARCLVNFNILMEDKMNLYPIDVEIIDINDNVPRF 133

Query: 134 KQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPE 193
              +IN+KI E+T PG  FPL  A D DVG NSLQ Y L+ N +F LA +   D  KYPE
Sbjct: 134 LTEEINVKIMENTAPGVRFPLSEAGDPDVGTNSLQSYQLSPNRHFSLAVQSGDDETKYPE 193

Query: 194 LILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLRE 253
           L+L+  LDREE  +H LVLTA DGGDPP+S T  I++ V D ND+ PVFS   Y+VT+ E
Sbjct: 194 LVLERVLDREEERVHHLVLTASDGGDPPRSSTAHIQVTVVDVNDHTPVFSLPQYQVTVPE 253

Query: 254 DVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIAS 313
           +VP G  +L V A D DEG+N E+TYSF  +  ++   F+LN  TGEI+T + LD+E  +
Sbjct: 254 NVPVGTRLLTVHAIDLDEGVNGEVTYSFRKITPKLPKMFHLNSLTGEISTLEGLDYEETA 313

Query: 314 SYTLSIEAKD-PGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTR 372
            Y + ++A+D PG L     + + +LD ND APEV +TS+S+ +PED+P GTVIAL   +
Sbjct: 314 FYEMEVQAQDGPGSLTK-AKVLITVLDVNDNAPEVTMTSLSSSIPEDTPLGTVIALFYLQ 372

Query: 373 DRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPL 432
           DRDSG+NGEV C +  N  F L+ S  NYY+LVT   LDRE +  YN+T+ ATDGG PPL
Sbjct: 373 DRDSGKNGEVTCTIPENLPFKLEKSIDNYYRLVTTKNLDRETLSLYNITLKATDGGTPPL 432

Query: 433 SSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIV 492
           S    + + ++D NDN P F  +SY V++AENNP GASI  ++A D D   + Q++YS+ 
Sbjct: 433 SRETHIFMQVADTNDNPPTFPHSSYSVYIAENNPRGASIFLVTAQDHDSEDNAQITYSLA 492

Query: 493 ASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLV 552
              ++   + SYVS+++ +GV++A ++FD+EQLR  +L + A D G P LS+N+SL + V
Sbjct: 493 EDTIQGAPVSSYVSINSDTGVLYALQSFDYEQLRELQLRVTAHDSGDPPLSSNMSLSLFV 552

Query: 553 GDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQAS 612
            D NDN P +LYPAL  DGS   ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L+AS
Sbjct: 553 LDQNDNPPEILYPALPTDGSTGMELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYLLLKAS 612

Query: 613 EPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVL 672
           EPGLF++GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL +  ADS+ EVL
Sbjct: 613 EPGLFAVGLYTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVL 672

Query: 673 PDLSDRREPSDP--QAKLQFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPG 730
            DL    EPSD      L  YLVVA+A +S +F   V++ ++LRLR   +S      + G
Sbjct: 673 ADLGS-LEPSDGPYNYDLTLYLVVAVATVSCVFLAFVLVLLALRLRRWHKSRLLQASEGG 731

Query: 731 LSSKPGPGV--LPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDLVCDNASWE 788
           L++ P      +         YS+ + + + S K+   F    P  V   D++    S E
Sbjct: 732 LANVPTSHFVGMDGVQAFLQTYSHEVSLTADSRKSHLIFPQ--PNYV---DMLISQESCE 786

Query: 789 QN 790
           +N
Sbjct: 787 KN 788


>gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precursor
           [Homo sapiens]
          Length = 936

 Score =  672 bits (1735), Expect = 0.0
 Identities = 345/708 (48%), Positives = 476/708 (67%), Gaps = 3/708 (0%)

Query: 32  QIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAE--KEYFTVNPESGDLLVSDR 89
           QI YSIPEEL K S VGN++KDLGL+ R+L  R +R+ +    + F++NP SG L+ + R
Sbjct: 34  QISYSIPEELEKGSFVGNISKDLGLAPRELAERGVRIVSRGRTQLFSLNPRSGSLITAGR 93

Query: 90  IDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLFKQTKINLKIGESTKPG 149
           IDRE++C +   CV+ F+ + E+ + +F I + V DINDN P F+   +++KI E+   G
Sbjct: 94  IDREELCAQSARCVVSFNILVEDRVKLFGIEIEVTDINDNAPKFQAENLDVKINENVAAG 153

Query: 150 TTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPELILKHSLDREEHSLHQ 209
             FPL  A+D DVG NSLQ Y L+ N++F L  +   +G KYPEL+L+HSLDREE ++H 
Sbjct: 154 MRFPLPEAIDPDVGVNSLQSYQLSPNKHFSLRVQSRANGVKYPELVLEHSLDREEEAIHH 213

Query: 210 LVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLREDVPPGFFVLQVTATDR 269
           LVLTA DGGDP +SGT  + + V DANDN PVF+   YRV++ E++P G  +L VTATDR
Sbjct: 214 LVLTASDGGDPLRSGTVLVSVTVFDANDNAPVFTLPEYRVSVPENLPVGTQLLTVTATDR 273

Query: 270 DEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIASSYTLSIEAKDPGDLAA 329
           DEG N E+TYSF  + +     F LN+ TGEI   ++LD+E    Y + I+A+D G   A
Sbjct: 274 DEGANGEVTYSFRKLPDTQLLKFQLNKYTGEIKISENLDYEETGFYEIEIQAEDGGAYLA 333

Query: 330 HCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTRDRDSGENGEVYCQVLGN 389
              + + + D ND +PE+ +TS+ +P+ EDSP GTV+AL+   D DS +NG+V C +L  
Sbjct: 334 TAKVLITVEDVNDNSPELTITSLFSPVTEDSPLGTVVALLNVHDLDSEQNGQVTCSILAY 393

Query: 390 AKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPLSSSIIVTLHISDVNDNA 449
             F L+ S  +YY+LV   ALDRE++  YN+T+TATDGG PPLS+     L ++D+NDN 
Sbjct: 394 LPFKLEKSIDSYYRLVIHRALDREQVSSYNITVTATDGGSPPLSTEAHFMLQVADINDNP 453

Query: 450 PVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIVASDLKPREILSYVSVSA 509
           P F Q SY  ++ ENN  GASI  ++A DPD   + Q+ YS+    ++   + SY+S+++
Sbjct: 454 PTFSQVSYFTYIPENNARGASIFSVTALDPDSKENAQIIYSLAEDTIQGVPLSSYISINS 513

Query: 510 QSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLNDNAPRVLYPALGP 569
            +GV++A R+FD+EQ    ++ + A D G P LS+NVSL + V D NDNAP +LYPAL  
Sbjct: 514 DTGVLYALRSFDYEQFHELQMQVTASDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPT 573

Query: 570 DGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRTA 629
           DGS   ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L+ASEPGLF++G  TGEVRTA
Sbjct: 574 DGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFAVGEHTGEVRTA 633

Query: 630 RALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDLSDRREPSDPQ-AKL 688
           RAL DRDA +Q L+VAV+D GQPPLSAT TL +  ADS+ +VL DL     P++ + + L
Sbjct: 634 RALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPQVLADLGSFESPANSETSDL 693

Query: 689 QFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPGLSSKPG 736
             YLVVA+A +S +F   VI+ ++ RLR   +S        GL+   G
Sbjct: 694 TLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGGLTGVSG 741


>gi|14196448 protocadherin gamma subfamily A, 10 isoform 2 precursor
           [Homo sapiens]
          Length = 850

 Score =  672 bits (1735), Expect = 0.0
 Identities = 345/708 (48%), Positives = 476/708 (67%), Gaps = 3/708 (0%)

Query: 32  QIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAE--KEYFTVNPESGDLLVSDR 89
           QI YSIPEEL K S VGN++KDLGL+ R+L  R +R+ +    + F++NP SG L+ + R
Sbjct: 34  QISYSIPEELEKGSFVGNISKDLGLAPRELAERGVRIVSRGRTQLFSLNPRSGSLITAGR 93

Query: 90  IDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLFKQTKINLKIGESTKPG 149
           IDRE++C +   CV+ F+ + E+ + +F I + V DINDN P F+   +++KI E+   G
Sbjct: 94  IDREELCAQSARCVVSFNILVEDRVKLFGIEIEVTDINDNAPKFQAENLDVKINENVAAG 153

Query: 150 TTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPELILKHSLDREEHSLHQ 209
             FPL  A+D DVG NSLQ Y L+ N++F L  +   +G KYPEL+L+HSLDREE ++H 
Sbjct: 154 MRFPLPEAIDPDVGVNSLQSYQLSPNKHFSLRVQSRANGVKYPELVLEHSLDREEEAIHH 213

Query: 210 LVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLREDVPPGFFVLQVTATDR 269
           LVLTA DGGDP +SGT  + + V DANDN PVF+   YRV++ E++P G  +L VTATDR
Sbjct: 214 LVLTASDGGDPLRSGTVLVSVTVFDANDNAPVFTLPEYRVSVPENLPVGTQLLTVTATDR 273

Query: 270 DEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIASSYTLSIEAKDPGDLAA 329
           DEG N E+TYSF  + +     F LN+ TGEI   ++LD+E    Y + I+A+D G   A
Sbjct: 274 DEGANGEVTYSFRKLPDTQLLKFQLNKYTGEIKISENLDYEETGFYEIEIQAEDGGAYLA 333

Query: 330 HCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTRDRDSGENGEVYCQVLGN 389
              + + + D ND +PE+ +TS+ +P+ EDSP GTV+AL+   D DS +NG+V C +L  
Sbjct: 334 TAKVLITVEDVNDNSPELTITSLFSPVTEDSPLGTVVALLNVHDLDSEQNGQVTCSILAY 393

Query: 390 AKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPLSSSIIVTLHISDVNDNA 449
             F L+ S  +YY+LV   ALDRE++  YN+T+TATDGG PPLS+     L ++D+NDN 
Sbjct: 394 LPFKLEKSIDSYYRLVIHRALDREQVSSYNITVTATDGGSPPLSTEAHFMLQVADINDNP 453

Query: 450 PVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIVASDLKPREILSYVSVSA 509
           P F Q SY  ++ ENN  GASI  ++A DPD   + Q+ YS+    ++   + SY+S+++
Sbjct: 454 PTFSQVSYFTYIPENNARGASIFSVTALDPDSKENAQIIYSLAEDTIQGVPLSSYISINS 513

Query: 510 QSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLNDNAPRVLYPALGP 569
            +GV++A R+FD+EQ    ++ + A D G P LS+NVSL + V D NDNAP +LYPAL  
Sbjct: 514 DTGVLYALRSFDYEQFHELQMQVTASDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPT 573

Query: 570 DGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRTA 629
           DGS   ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L+ASEPGLF++G  TGEVRTA
Sbjct: 574 DGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFAVGEHTGEVRTA 633

Query: 630 RALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDLSDRREPSDPQ-AKL 688
           RAL DRDA +Q L+VAV+D GQPPLSAT TL +  ADS+ +VL DL     P++ + + L
Sbjct: 634 RALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPQVLADLGSFESPANSETSDL 693

Query: 689 QFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPGLSSKPG 736
             YLVVA+A +S +F   VI+ ++ RLR   +S        GL+   G
Sbjct: 694 TLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGGLTGVSG 741


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,618,022
Number of Sequences: 37866
Number of extensions: 1528091
Number of successful extensions: 10585
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 3356
Number of HSP's gapped (non-prelim): 694
length of query: 811
length of database: 18,247,518
effective HSP length: 111
effective length of query: 700
effective length of database: 14,044,392
effective search space: 9831074400
effective search space used: 9831074400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.

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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.