Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 9910544
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|9910544 CDC42 small effector 1 [Homo sapiens]
(79 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|9910544 CDC42 small effector 1 [Homo sapiens] 170 2e-43
gi|84798620 CDC42 small effector 1 [Homo sapiens] 170 2e-43
gi|84697026 CDC42 small effector 2 [Homo sapiens] 82 7e-17
gi|9910378 CDC42 small effector 2 [Homo sapiens] 82 7e-17
gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap... 34 0.029
gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II, pol... 28 1.2
gi|156766068 CDC42 binding protein kinase gamma (DMPK-like) [Hom... 28 1.2
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens] 28 2.1
gi|237820711 lymphocyte antigen 6 complex, locus K isoform 1 [Ho... 28 2.1
gi|28559039 mediator complex subunit 1 [Homo sapiens] 27 4.6
gi|224465184 nuclear factor I/A isoform 4 [Homo sapiens] 26 6.0
gi|224465182 nuclear factor I/A isoform 3 [Homo sapiens] 26 6.0
gi|30840980 nuclear factor I/A isoform 2 [Homo sapiens] 26 6.0
gi|197927284 nuclear factor I/A isoform 1 [Homo sapiens] 26 6.0
gi|119943108 synapse-associated protein 102 isoform b [Homo sapi... 26 6.0
gi|119943106 synapse-associated protein 102 isoform a [Homo sapi... 26 6.0
gi|115527097 CDC42-binding protein kinase beta [Homo sapiens] 26 7.9
>gi|9910544 CDC42 small effector 1 [Homo sapiens]
Length = 79
Score = 170 bits (431), Expect = 2e-43
Identities = 79/79 (100%), Positives = 79/79 (100%)
Query: 1 MSEFWHKLGCCVVEKPQPKKKRRRIDRTMIGEPMNFVHLTHIGSGEMGAGDGLAMTGAVQ 60
MSEFWHKLGCCVVEKPQPKKKRRRIDRTMIGEPMNFVHLTHIGSGEMGAGDGLAMTGAVQ
Sbjct: 1 MSEFWHKLGCCVVEKPQPKKKRRRIDRTMIGEPMNFVHLTHIGSGEMGAGDGLAMTGAVQ 60
Query: 61 EQMRSKGNRDRPWSNSRGL 79
EQMRSKGNRDRPWSNSRGL
Sbjct: 61 EQMRSKGNRDRPWSNSRGL 79
>gi|84798620 CDC42 small effector 1 [Homo sapiens]
Length = 79
Score = 170 bits (431), Expect = 2e-43
Identities = 79/79 (100%), Positives = 79/79 (100%)
Query: 1 MSEFWHKLGCCVVEKPQPKKKRRRIDRTMIGEPMNFVHLTHIGSGEMGAGDGLAMTGAVQ 60
MSEFWHKLGCCVVEKPQPKKKRRRIDRTMIGEPMNFVHLTHIGSGEMGAGDGLAMTGAVQ
Sbjct: 1 MSEFWHKLGCCVVEKPQPKKKRRRIDRTMIGEPMNFVHLTHIGSGEMGAGDGLAMTGAVQ 60
Query: 61 EQMRSKGNRDRPWSNSRGL 79
EQMRSKGNRDRPWSNSRGL
Sbjct: 61 EQMRSKGNRDRPWSNSRGL 79
>gi|84697026 CDC42 small effector 2 [Homo sapiens]
Length = 84
Score = 82.4 bits (202), Expect = 7e-17
Identities = 38/67 (56%), Positives = 50/67 (74%), Gaps = 3/67 (4%)
Query: 1 MSEFWHKLGCCVVEKPQPKKKRRRIDRTMIGEPMNFVHLTHIGSGEMGAGDGLAMTGAVQ 60
MSEFW CC+ E+PQPK+ RRRIDR+MIGEP NFVH H+GSG++ + G+ ++Q
Sbjct: 1 MSEFWLCFNCCIAEQPQPKR-RRRIDRSMIGEPTNFVHTAHVGSGDLFS--GMNSVSSIQ 57
Query: 61 EQMRSKG 67
QM+SKG
Sbjct: 58 NQMQSKG 64
>gi|9910378 CDC42 small effector 2 [Homo sapiens]
Length = 84
Score = 82.4 bits (202), Expect = 7e-17
Identities = 38/67 (56%), Positives = 50/67 (74%), Gaps = 3/67 (4%)
Query: 1 MSEFWHKLGCCVVEKPQPKKKRRRIDRTMIGEPMNFVHLTHIGSGEMGAGDGLAMTGAVQ 60
MSEFW CC+ E+PQPK+ RRRIDR+MIGEP NFVH H+GSG++ + G+ ++Q
Sbjct: 1 MSEFWLCFNCCIAEQPQPKR-RRRIDRSMIGEPTNFVHTAHVGSGDLFS--GMNSVSSIQ 57
Query: 61 EQMRSKG 67
QM+SKG
Sbjct: 58 NQMQSKG 64
>gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo
sapiens]
Length = 505
Score = 33.9 bits (76), Expect = 0.029
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 14 EKPQPKKKRRRIDRTMIGEPMNFVHLTHIG 43
EK + K K++R+ + IG P NF H+ H+G
Sbjct: 187 EKKKGKAKKKRLTKADIGTPSNFQHIGHVG 216
>gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1a
[Homo sapiens]
Length = 961
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 14 EKPQPKKKRRRIDRTMIGEPMNFVHLTHIGSGEMGAGDGLAMTGAVQEQMRSKGNRD 70
E+PQP+K R +RT +G P + G G G L A E R N D
Sbjct: 884 EEPQPRKPGTRRERT-LGAPASSERSAAGGRGPRGHKRKLNEEDAASESSRESSNED 939
>gi|156766068 CDC42 binding protein kinase gamma (DMPK-like) [Homo
sapiens]
Length = 1551
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 13 VEKPQPKKKRRR------IDRTMIGEPMNFVHLTHIG--SGEMGAGD 51
V + Q K++RR + +I P NF HL H+G +G GA D
Sbjct: 1414 VSEEQQKQQRREMLKDPFVRSKLISPPTNFNHLVHVGPANGRPGARD 1460
>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
Length = 502
Score = 27.7 bits (60), Expect = 2.1
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 16 PQPKKKRR----RIDRTMIGEPMNFVHLTHIG 43
P P K+R +I + IG P F H++H+G
Sbjct: 220 PSPADKKRSGKKKISKADIGAPSGFKHVSHVG 251
>gi|237820711 lymphocyte antigen 6 complex, locus K isoform 1 [Homo
sapiens]
Length = 165
Score = 27.7 bits (60), Expect = 2.1
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 5/31 (16%)
Query: 9 GCCVVEKPQPKKKRRRIDRTMIGEPMNFVHL 39
GC +E+P+P++K R ++ EPM F +L
Sbjct: 88 GCAAMERPKPEEK-----RFLLEEPMPFFYL 113
>gi|28559039 mediator complex subunit 1 [Homo sapiens]
Length = 1581
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 45 GEMGAGDGLAMTGAVQEQMRSKGNRDRPWSNS 76
GE + L+ ++ E++ +K N++RPWS +
Sbjct: 5 GETEESEKLSKMSSLLERLHAKFNQNRPWSET 36
>gi|224465184 nuclear factor I/A isoform 4 [Homo sapiens]
Length = 554
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 10 CCVVEKPQPKKKRRRID 26
CCV+ P K K RRID
Sbjct: 147 CCVLSNPDQKGKMRRID 163
>gi|224465182 nuclear factor I/A isoform 3 [Homo sapiens]
Length = 501
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 10 CCVVEKPQPKKKRRRID 26
CCV+ P K K RRID
Sbjct: 94 CCVLSNPDQKGKMRRID 110
>gi|30840980 nuclear factor I/A isoform 2 [Homo sapiens]
Length = 498
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 10 CCVVEKPQPKKKRRRID 26
CCV+ P K K RRID
Sbjct: 102 CCVLSNPDQKGKMRRID 118
>gi|197927284 nuclear factor I/A isoform 1 [Homo sapiens]
Length = 509
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 10 CCVVEKPQPKKKRRRID 26
CCV+ P K K RRID
Sbjct: 102 CCVLSNPDQKGKMRRID 118
>gi|119943108 synapse-associated protein 102 isoform b [Homo
sapiens]
Length = 512
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 1 MSEFWHKLGCCVVEKPQPKKKRRRIDRTMIGEPMNFV 37
+SEF HK G CV P R R D + G+ +FV
Sbjct: 340 ISEFPHKFGSCV-----PHTTRPRRDNEVDGQDYHFV 371
>gi|119943106 synapse-associated protein 102 isoform a [Homo
sapiens]
Length = 817
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 1 MSEFWHKLGCCVVEKPQPKKKRRRIDRTMIGEPMNFV 37
+SEF HK G CV P R R D + G+ +FV
Sbjct: 645 ISEFPHKFGSCV-----PHTTRPRRDNEVDGQDYHFV 676
>gi|115527097 CDC42-binding protein kinase beta [Homo sapiens]
Length = 1711
Score = 25.8 bits (55), Expect = 7.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 29 MIGEPMNFVHLTHIGSGE 46
MI P NF H+ H+G G+
Sbjct: 1582 MISNPTNFNHVAHMGPGD 1599
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,418,282
Number of Sequences: 37866
Number of extensions: 142180
Number of successful extensions: 336
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 322
Number of HSP's gapped (non-prelim): 17
length of query: 79
length of database: 18,247,518
effective HSP length: 51
effective length of query: 28
effective length of database: 16,316,352
effective search space: 456857856
effective search space used: 456857856
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.