Search of human proteins with 9558731

Search of human proteins with 9558731

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|9558731 replication protein A4, 34kDa [Homo sapiens]
         (261 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|9558731 replication protein A4, 34kDa [Homo sapiens]               523   e-149
gi|4506585 replication protein A2, 32kDa [Homo sapiens]               209   1e-54
gi|116875765 tight junction protein 1 isoform b [Homo sapiens]         29   3.6  
gi|116875767 tight junction protein 1 isoform a [Homo sapiens]         29   3.6  
gi|38569460 SNF1-like kinase 2 [Homo sapiens]                          29   3.6  
gi|38570058 hypothetical protein LOC80129 [Homo sapiens]               29   4.7  
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        29   4.7  
gi|190358536 SWI/SNF-related, matrix-associated actin-dependent ...    28   6.2  
gi|190358534 SWI/SNF-related, matrix-associated actin-dependent ...    28   6.2  
gi|190358532 SWI/SNF-related, matrix-associated actin-dependent ...    28   6.2  
gi|226532848 zinc finger, AN1-type domain 2A [Homo sapiens]            28   8.1  

>gi|9558731 replication protein A4, 34kDa [Homo sapiens]
          Length = 261

 Score =  523 bits (1346), Expect = e-149
 Identities = 261/261 (100%), Positives = 261/261 (100%)

Query: 1   MSKSGFGSYGSISAADGASGGSDQLCERDATPAIKTQRPKVRIQDVVPCNVNQLLSSTVF 60
           MSKSGFGSYGSISAADGASGGSDQLCERDATPAIKTQRPKVRIQDVVPCNVNQLLSSTVF
Sbjct: 1   MSKSGFGSYGSISAADGASGGSDQLCERDATPAIKTQRPKVRIQDVVPCNVNQLLSSTVF 60

Query: 61  DPVFKVRGIIVSQVSIVGVIRGAEKASNHICYKIDDMTAKPIEARQWFGREKVKQVTPLS 120
           DPVFKVRGIIVSQVSIVGVIRGAEKASNHICYKIDDMTAKPIEARQWFGREKVKQVTPLS
Sbjct: 61  DPVFKVRGIIVSQVSIVGVIRGAEKASNHICYKIDDMTAKPIEARQWFGREKVKQVTPLS 120

Query: 121 VGVYVKVFGILKCPTGTKSLEVLKIHVLEDMNEFTVHILETVNAHMMLDKARRDTTVESV 180
           VGVYVKVFGILKCPTGTKSLEVLKIHVLEDMNEFTVHILETVNAHMMLDKARRDTTVESV
Sbjct: 121 VGVYVKVFGILKCPTGTKSLEVLKIHVLEDMNEFTVHILETVNAHMMLDKARRDTTVESV 180

Query: 181 PVSPSEVNDAGDNDESHRNFIQDEVLRLIHECPHQEGKSIHELRAQLCDLSVKAIKEAID 240
           PVSPSEVNDAGDNDESHRNFIQDEVLRLIHECPHQEGKSIHELRAQLCDLSVKAIKEAID
Sbjct: 181 PVSPSEVNDAGDNDESHRNFIQDEVLRLIHECPHQEGKSIHELRAQLCDLSVKAIKEAID 240

Query: 241 YLTVEGHIYPTVDREHFKSAD 261
           YLTVEGHIYPTVDREHFKSAD
Sbjct: 241 YLTVEGHIYPTVDREHFKSAD 261


>gi|4506585 replication protein A2, 32kDa [Homo sapiens]
          Length = 270

 Score =  209 bits (533), Expect = 1e-54
 Identities = 123/270 (45%), Positives = 164/270 (60%), Gaps = 11/270 (4%)

Query: 1   MSKSGFGSYGSISAADGASGGSDQLCERDATPAIKT--QRPKVRIQDVVPCNVNQLLSST 58
           M  SGF SYGS S   G +GG  Q      +PA     ++ + R Q +VPC ++QLLS+T
Sbjct: 1   MWNSGFESYGSSSY--GGAGGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCTISQLLSAT 58

Query: 59  VFDPVFKVRGIIVSQVSIVGVIRGAEKASNHICYKIDDMTAKPIEARQWFGREKV-KQVT 117
           + D VF++  + +SQV+IVG+IR AEKA  +I YKIDDMTA P++ RQW   +    + T
Sbjct: 59  LVDEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENT 118

Query: 118 PLSVGVYVKVFGILKCPTGTKSLEVLKIHVLEDMNEFTVHILETVNAHMMLDKARRDTTV 177
            +    YVKV G L+     KSL   KI  LEDMNEFT HILE +NAHM+L KA    + 
Sbjct: 119 VVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSKANSQPSA 178

Query: 178 ESVPVS---PSEVNDAGDNDESHRNFI---QDEVLRLIHECPHQEGKSIHELRAQLCDLS 231
              P+S    SE  + G N     N +   Q++VL LI  CP  EG +  +L+ QL  +S
Sbjct: 179 GRAPISNPGMSEAGNFGGNSFMPANGLTVAQNQVLNLIKACPRPEGLNFQDLKNQLKHMS 238

Query: 232 VKAIKEAIDYLTVEGHIYPTVDREHFKSAD 261
           V +IK+A+D+L+ EGHIY TVD +HFKS D
Sbjct: 239 VSSIKQAVDFLSNEGHIYSTVDDDHFKSTD 268


>gi|116875765 tight junction protein 1 isoform b [Homo sapiens]
          Length = 1668

 Score = 29.3 bits (64), Expect = 3.6
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 132  KCPTGTKSLEVLKIHVLEDMNEFTVHILETVNAHMMLDKARRD---TTVESVPVSPSEVN 188
            K PT  K+L  +K H L    EF   + ET + H    K + +   T  +++PVSPS V 
Sbjct: 1486 KTPTSPKTL--VKSHSLAQPPEFDSGV-ETFSIHAEKPKYQINNISTVPKAIPVSPSAVE 1542

Query: 189  DAGDND 194
            +  D D
Sbjct: 1543 EDEDED 1548


>gi|116875767 tight junction protein 1 isoform a [Homo sapiens]
          Length = 1748

 Score = 29.3 bits (64), Expect = 3.6
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 132  KCPTGTKSLEVLKIHVLEDMNEFTVHILETVNAHMMLDKARRD---TTVESVPVSPSEVN 188
            K PT  K+L  +K H L    EF   + ET + H    K + +   T  +++PVSPS V 
Sbjct: 1566 KTPTSPKTL--VKSHSLAQPPEFDSGV-ETFSIHAEKPKYQINNISTVPKAIPVSPSAVE 1622

Query: 189  DAGDND 194
            +  D D
Sbjct: 1623 EDEDED 1628


>gi|38569460 SNF1-like kinase 2 [Homo sapiens]
          Length = 926

 Score = 29.3 bits (64), Expect = 3.6
 Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 23/138 (16%)

Query: 103 EARQWFGREKVKQVTPLSVGVYVKVFGILKCPTGTKSLEVLKIHVLED-------MNEFT 155
           E +Q+ G +    +  + V +YV V G L  P    +L +L+  VLE        M+E  
Sbjct: 189 EGQQYEGPQL--DIWSMGVVLYVLVCGAL--PFDGPTLPILRQRVLEGRFRIPYFMSEDC 244

Query: 156 VHILETVNAHMMLDKARRDTTVE---------SVPVSPSEVNDAGDNDESHRNFIQDEVL 206
            H++  +   ++LD ++R T  +          VPV    +      +E       ++VL
Sbjct: 245 EHLIRRM---LVLDPSKRLTIAQIKEHKWMLIEVPVQRPVLYPQEQENEPSIGEFNEQVL 301

Query: 207 RLIHECPHQEGKSIHELR 224
           RL+H     + K+I  L+
Sbjct: 302 RLMHSLGIDQQKTIESLQ 319


>gi|38570058 hypothetical protein LOC80129 [Homo sapiens]
          Length = 715

 Score = 28.9 bits (63), Expect = 4.7
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 142 VLKIHVLEDMNEFT----VHILETVNAHMMLDKARRDTTVESVPVSPSEVNDAGDNDESH 197
           +LK+  L   NEF     V + ET+N H M  KA R+T +        E   A    E  
Sbjct: 194 ILKLRDLRKENEFVKGQIVILEETINVHEMEAKASRETIMRLASEVNREQKKAASCTEEK 253

Query: 198 RNFIQD 203
               QD
Sbjct: 254 EKLNQD 259


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 28.9 bits (63), Expect = 4.7
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 3/86 (3%)

Query: 134  PTGTKSLEVLKIHVLEDMNEFTVHILETVNAHMMLDKARRDTTVESVPVSPSEVNDAGDN 193
            P GT+        V ED+N   ++ LET  +  M +++ R +   S  +SP  V  AG  
Sbjct: 1338 PLGTEMNTGFSSEVKEDLNGPFLNQLETDPSLDMKEQSTRSSGHSSSELSPDAVEKAG-- 1395

Query: 194  DESHRNFIQDEVLRLIHECPHQEGKS 219
              S    I   VL  +   P +E  S
Sbjct: 1396 -MSSNQSISSPVLDAVPRTPSRERSS 1420


>gi|190358536 SWI/SNF-related, matrix-associated actin-dependent
           regulator of chromatin, subfamily a, containing DEAD/H
           box 1 isoform a [Homo sapiens]
          Length = 1028

 Score = 28.5 bits (62), Expect = 6.2
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 10/71 (14%)

Query: 89  HICYKIDDMTAKPIEARQWFGREKVKQVTPLSVGVYVKVFGILKCPTGTKSLEVLKIHVL 148
           ++  ++  M   P+  RQ++  EK+K+++ L          +LK PT  ++   L    +
Sbjct: 775 NVMMQLRKMANHPLLHRQYYTAEKLKEMSQL----------MLKEPTHCEANPDLIFEDM 824

Query: 149 EDMNEFTVHIL 159
           E M +F +H+L
Sbjct: 825 EVMTDFELHVL 835


>gi|190358534 SWI/SNF-related, matrix-associated actin-dependent
           regulator of chromatin, subfamily a, containing DEAD/H
           box 1 isoform b [Homo sapiens]
          Length = 1026

 Score = 28.5 bits (62), Expect = 6.2
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 10/71 (14%)

Query: 89  HICYKIDDMTAKPIEARQWFGREKVKQVTPLSVGVYVKVFGILKCPTGTKSLEVLKIHVL 148
           ++  ++  M   P+  RQ++  EK+K+++ L          +LK PT  ++   L    +
Sbjct: 773 NVMMQLRKMANHPLLHRQYYTAEKLKEMSQL----------MLKEPTHCEANPDLIFEDM 822

Query: 149 EDMNEFTVHIL 159
           E M +F +H+L
Sbjct: 823 EVMTDFELHVL 833


>gi|190358532 SWI/SNF-related, matrix-associated actin-dependent
           regulator of chromatin, subfamily a, containing DEAD/H
           box 1 isoform a [Homo sapiens]
          Length = 1028

 Score = 28.5 bits (62), Expect = 6.2
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 10/71 (14%)

Query: 89  HICYKIDDMTAKPIEARQWFGREKVKQVTPLSVGVYVKVFGILKCPTGTKSLEVLKIHVL 148
           ++  ++  M   P+  RQ++  EK+K+++ L          +LK PT  ++   L    +
Sbjct: 775 NVMMQLRKMANHPLLHRQYYTAEKLKEMSQL----------MLKEPTHCEANPDLIFEDM 824

Query: 149 EDMNEFTVHIL 159
           E M +F +H+L
Sbjct: 825 EVMTDFELHVL 835


>gi|226532848 zinc finger, AN1-type domain 2A [Homo sapiens]
          Length = 145

 Score = 28.1 bits (61), Expect = 8.1
 Identities = 15/55 (27%), Positives = 23/55 (41%)

Query: 194 DESHRNFIQDEVLRLIHECPHQEGKSIHELRAQLCDLSVKAIKEAIDYLTVEGHI 248
           D   ++F +D      H+CP    K +H     LC+  +   K  I  + V  HI
Sbjct: 26  DACKQDFCKDHFPYAAHKCPFAFQKDVHVPVCPLCNTPIPVKKGQIPDVVVGDHI 80


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.134    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,124,041
Number of Sequences: 37866
Number of extensions: 363014
Number of successful extensions: 938
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 933
Number of HSP's gapped (non-prelim): 11
length of query: 261
length of database: 18,247,518
effective HSP length: 100
effective length of query: 161
effective length of database: 14,460,918
effective search space: 2328207798
effective search space used: 2328207798
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.