Search of human proteins with 93004102

Search of human proteins with 93004102

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|93004102 nuclear LIM interactor-interacting factor 2 [Homo
sapiens]
         (271 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|93004102 nuclear LIM interactor-interacting factor 2 [Homo sa...   547   e-156
gi|56549683 small CTD phosphatase 3 isoform 1 [Homo sapiens]          322   3e-88
gi|56549681 small CTD phosphatase 3 isoform 2 [Homo sapiens]          316   1e-86
gi|10864009 CTD (carboxy-terminal domain, RNA polymerase II, pol...   315   3e-86
gi|32813443 CTD (carboxy-terminal domain, RNA polymerase II, pol...   313   8e-86
gi|100815975 CTD (carboxy-terminal domain, RNA polymerase II, po...   151   5e-37
gi|219555649 dullard homolog [Homo sapiens]                           136   2e-32
gi|31542547 dullard homolog [Homo sapiens]                            136   2e-32
gi|48526509 translocase of inner mitochondrial membrane 50 homol...    75   6e-14
gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II, pol...    37   0.014
gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II, pol...    37   0.014
gi|193083197 ubiquitin-like domain containing CTD phosphatase 1 ...    31   1.3  
gi|24797106 UBX domain containing 8 [Homo sapiens]                     30   2.2  
gi|169169865 PREDICTED: hypothetical protein LOC285754 [Homo sap...    30   2.9  
gi|169168870 PREDICTED: hypothetical protein LOC285754 [Homo sap...    29   5.0  
gi|169169319 PREDICTED: hypothetical protein LOC285754 [Homo sap...    29   5.0  
gi|30089999 actin-like 6A isoform 2 [Homo sapiens]                     29   5.0  
gi|30089997 actin-like 6A isoform 2 [Homo sapiens]                     29   5.0  
gi|4757718 actin-like 6A isoform 1 [Homo sapiens]                      29   5.0  
gi|186659512 calmodulin regulated spectrin-associated protein 1 ...    28   8.5  

>gi|93004102 nuclear LIM interactor-interacting factor 2 [Homo
           sapiens]
          Length = 271

 Score =  547 bits (1409), Expect = e-156
 Identities = 271/271 (100%), Positives = 271/271 (100%)

Query: 1   MEHGSIITQARREDALVLTKQGLVSKSSPKKPRGRNIFKALFCCFRAQHVGQSSSSTELA 60
           MEHGSIITQARREDALVLTKQGLVSKSSPKKPRGRNIFKALFCCFRAQHVGQSSSSTELA
Sbjct: 1   MEHGSIITQARREDALVLTKQGLVSKSSPKKPRGRNIFKALFCCFRAQHVGQSSSSTELA 60

Query: 61  AYKEEANTIAKSDLLQCLQYQFYQIPGTCLLPEVTEEDQGRICVVIDLDETLVHSSFKPI 120
           AYKEEANTIAKSDLLQCLQYQFYQIPGTCLLPEVTEEDQGRICVVIDLDETLVHSSFKPI
Sbjct: 61  AYKEEANTIAKSDLLQCLQYQFYQIPGTCLLPEVTEEDQGRICVVIDLDETLVHSSFKPI 120

Query: 121 NNADFIVPIEIEGTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLDRC 180
           NNADFIVPIEIEGTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLDRC
Sbjct: 121 NNADFIVPIEIEGTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLDRC 180

Query: 181 GVFRARLFRESCVFHQGCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVPVQSWFDDM 240
           GVFRARLFRESCVFHQGCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVPVQSWFDDM
Sbjct: 181 GVFRARLFRESCVFHQGCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVPVQSWFDDM 240

Query: 241 ADTELLNLIPIFEELSGAEDVYTSLGQLRAP 271
           ADTELLNLIPIFEELSGAEDVYTSLGQLRAP
Sbjct: 241 ADTELLNLIPIFEELSGAEDVYTSLGQLRAP 271


>gi|56549683 small CTD phosphatase 3 isoform 1 [Homo sapiens]
          Length = 276

 Score =  322 bits (824), Expect = 3e-88
 Identities = 177/275 (64%), Positives = 202/275 (73%), Gaps = 9/275 (3%)

Query: 1   MEHGSIITQAR--REDALVLTKQGLVSKS---SPKKPRGRNIFKALFCCFRAQHVGQS-- 53
           M+  +IITQ    +ED   L   G  +     S KK R R+I  + FCCFR  +V     
Sbjct: 1   MDGPAIITQVTNPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPP 60

Query: 54  SSSTELAAYKEEANTIAKSDLLQCLQYQFYQIPGTCLLPEVTEEDQGRICVVIDLDETLV 113
           SS + L    EE   + K D  Q +       P   LLPEVT  D G+ CVVIDLDETLV
Sbjct: 61  SSPSVLPPLVEENGGLQKGDQRQVIPIP--SPPAKYLLPEVTVLDYGKKCVVIDLDETLV 118

Query: 114 HSSFKPINNADFIVPIEIEGTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPV 173
           HSSFKPI+NADFIVP+EI+GT HQVYVLKRP+VDEFL+RMG+LFECVLFTASLAKYADPV
Sbjct: 119 HSSFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPV 178

Query: 174 TDLLDRCGVFRARLFRESCVFHQGCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVPV 233
            DLLDR GVFRARLFRESCVFH+G YVKDLSRLGR+L K +I+DNSPASYIFHPENAVPV
Sbjct: 179 ADLLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPV 238

Query: 234 QSWFDDMADTELLNLIPIFEELSGAEDVYTSLGQL 268
           QSWFDDM DTELL+LIP FE LS  +DVY+ L +L
Sbjct: 239 QSWFDDMTDTELLDLIPFFEGLSREDDVYSMLHRL 273


>gi|56549681 small CTD phosphatase 3 isoform 2 [Homo sapiens]
          Length = 265

 Score =  316 bits (810), Expect = 1e-86
 Identities = 175/275 (63%), Positives = 199/275 (72%), Gaps = 20/275 (7%)

Query: 1   MEHGSIITQAR--REDALVLTKQGLVSKS---SPKKPRGRNIFKALFCCFRAQHVGQS-- 53
           M+  +IITQ    +ED   L   G  +     S KK R R+I  + FCCFR  +V     
Sbjct: 1   MDGPAIITQVTNPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPP 60

Query: 54  SSSTELAAYKEEANTIAKSDLLQCLQYQFYQIPGTCLLPEVTEEDQGRICVVIDLDETLV 113
           SS + L    EE   + K              P   LLPEVT  D G+ CVVIDLDETLV
Sbjct: 61  SSPSVLPPLVEENGGLQKP-------------PAKYLLPEVTVLDYGKKCVVIDLDETLV 107

Query: 114 HSSFKPINNADFIVPIEIEGTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPV 173
           HSSFKPI+NADFIVP+EI+GT HQVYVLKRP+VDEFL+RMG+LFECVLFTASLAKYADPV
Sbjct: 108 HSSFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPV 167

Query: 174 TDLLDRCGVFRARLFRESCVFHQGCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVPV 233
            DLLDR GVFRARLFRESCVFH+G YVKDLSRLGR+L K +I+DNSPASYIFHPENAVPV
Sbjct: 168 ADLLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPV 227

Query: 234 QSWFDDMADTELLNLIPIFEELSGAEDVYTSLGQL 268
           QSWFDDM DTELL+LIP FE LS  +DVY+ L +L
Sbjct: 228 QSWFDDMTDTELLDLIPFFEGLSREDDVYSMLHRL 262


>gi|10864009 CTD (carboxy-terminal domain, RNA polymerase II,
           polypeptide A) small phosphatase 1 isoform 1 [Homo
           sapiens]
          Length = 261

 Score =  315 bits (807), Expect = 3e-86
 Identities = 163/270 (60%), Positives = 195/270 (72%), Gaps = 13/270 (4%)

Query: 1   MEHGSIITQARREDAL-VLTKQGLVSKSSPKKPRGRNIFKALFCCFRAQHVGQSSSSTEL 59
           M+  ++ITQ  +E+A   L  +G    ++ +KPR R I  +LFCC          + +  
Sbjct: 1   MDSSAVITQISKEEARGPLRGKGDQKSAASQKPRSRGILHSLFCCVCRDDGEALPAHSGA 60

Query: 60  AAYKEEANTIAKSDLLQCLQYQFYQIPGTCLLPEVTEEDQGRICVVIDLDETLVHSSFKP 119
               EE   I K            Q P   LLPE   +D  +ICVVIDLDETLVHSSFKP
Sbjct: 61  PLLVEENGAIPK------------QTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKP 108

Query: 120 INNADFIVPIEIEGTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLDR 179
           +NNADFI+P+EI+G  HQVYVLKRP+VDEFL+RMGELFECVLFTASLAKYADPV DLLD+
Sbjct: 109 VNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDK 168

Query: 180 CGVFRARLFRESCVFHQGCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVPVQSWFDD 239
            G FRARLFRESCVFH+G YVKDLSRLGRDLR+ LILDNSPASY+FHP+NAVPV SWFD+
Sbjct: 169 WGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDN 228

Query: 240 MADTELLNLIPIFEELSGAEDVYTSLGQLR 269
           M+DTEL +L+P FE+LS  +DVY+ L Q R
Sbjct: 229 MSDTELHDLLPFFEQLSRVDDVYSVLRQPR 258


>gi|32813443 CTD (carboxy-terminal domain, RNA polymerase II,
           polypeptide A) small phosphatase 1 isoform 2 [Homo
           sapiens]
          Length = 260

 Score =  313 bits (803), Expect = 8e-86
 Identities = 163/270 (60%), Positives = 197/270 (72%), Gaps = 14/270 (5%)

Query: 1   MEHGSIITQARREDAL-VLTKQGLVSKSSPKKPRGRNIFKALFCCFRAQHVGQSSSSTEL 59
           M+  ++ITQ  +E+A   L  +G    ++ +KPR R I  +LFCC          + +  
Sbjct: 1   MDSSAVITQISKEEARGPLRGKGDQKSAASQKPRSRGILHSLFCCVCRDDGEALPAHSGA 60

Query: 60  AAYKEEANTIAKSDLLQCLQYQFYQIPGTCLLPEVTEEDQGRICVVIDLDETLVHSSFKP 119
               EE   I K+ +    QY         LLPE   +D  +ICVVIDLDETLVHSSFKP
Sbjct: 61  PLLVEENGAIPKTPV----QY---------LLPEAKAQDSDKICVVIDLDETLVHSSFKP 107

Query: 120 INNADFIVPIEIEGTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLDR 179
           +NNADFI+P+EI+G  HQVYVLKRP+VDEFL+RMGELFECVLFTASLAKYADPV DLLD+
Sbjct: 108 VNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDK 167

Query: 180 CGVFRARLFRESCVFHQGCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVPVQSWFDD 239
            G FRARLFRESCVFH+G YVKDLSRLGRDLR+ LILDNSPASY+FHP+NAVPV SWFD+
Sbjct: 168 WGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDN 227

Query: 240 MADTELLNLIPIFEELSGAEDVYTSLGQLR 269
           M+DTEL +L+P FE+LS  +DVY+ L Q R
Sbjct: 228 MSDTELHDLLPFFEQLSRVDDVYSVLRQPR 257


>gi|100815975 CTD (carboxy-terminal domain, RNA polymerase II,
           polypeptide A) small phosphatase like 2 [Homo sapiens]
          Length = 466

 Score =  151 bits (382), Expect = 5e-37
 Identities = 80/179 (44%), Positives = 110/179 (61%), Gaps = 14/179 (7%)

Query: 91  LPEVTEEDQGR-------------ICVVIDLDETLVHSSFKPINNADFIVPIEIEGTTHQ 137
           +P +TEE   R               +V+DLDETLVH S   + +A    P+  +   +Q
Sbjct: 264 VPPLTEEQLNRKPALPLKTRSTPEFSLVLDLDETLVHCSLNELEDAALTFPVLFQDVIYQ 323

Query: 138 VYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLD-RCGVFRARLFRESCVFHQ 196
           VYV  RP+  EFL RM +++E +LFTAS   YAD + ++LD +  + R RLFRE CV  Q
Sbjct: 324 VYVRLRPFFREFLERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQ 383

Query: 197 GCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVPVQSWFDDMADTELLNLIPIFEEL 255
           G Y+KDL+ LGRDL KT+I+DNSP ++ +   N +P++SWF D  D ELL LIP  E+L
Sbjct: 384 GNYIKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPIESWFMDKNDNELLKLIPFLEKL 442


>gi|219555649 dullard homolog [Homo sapiens]
          Length = 244

 Score =  136 bits (342), Expect = 2e-32
 Identities = 72/176 (40%), Positives = 106/176 (60%), Gaps = 9/176 (5%)

Query: 101 RICVVIDLDETLVHS--------SFKPINNADFIVPIEIEGTTHQVYVLKRPYVDEFLRR 152
           R  +V+DLDETL+HS        + +P    DFI+ + I+    + +V KRP+VD FL  
Sbjct: 61  RKILVLDLDETLIHSHHDGVLRPTVRPGTPPDFILKVVIDKHPVRFFVHKRPHVDFFLEV 120

Query: 153 MGELFECVLFTASLAKYADPVTDLLDRC-GVFRARLFRESCVFHQGCYVKDLSRLGRDLR 211
           + + +E V+FTAS+  Y   V D LD    + + R +R+ C    G Y+KDLS +  DL 
Sbjct: 121 VSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELGSYIKDLSVVHSDLS 180

Query: 212 KTLILDNSPASYIFHPENAVPVQSWFDDMADTELLNLIPIFEELSGAEDVYTSLGQ 267
             +ILDNSP +Y  HP+NA+P++SWF D +DT LLNL+P+ + L    DV + L +
Sbjct: 181 SIVILDNSPGAYRSHPDNAIPIKSWFSDPSDTALLNLLPMLDALRFTADVRSVLSR 236


>gi|31542547 dullard homolog [Homo sapiens]
          Length = 244

 Score =  136 bits (342), Expect = 2e-32
 Identities = 72/176 (40%), Positives = 106/176 (60%), Gaps = 9/176 (5%)

Query: 101 RICVVIDLDETLVHS--------SFKPINNADFIVPIEIEGTTHQVYVLKRPYVDEFLRR 152
           R  +V+DLDETL+HS        + +P    DFI+ + I+    + +V KRP+VD FL  
Sbjct: 61  RKILVLDLDETLIHSHHDGVLRPTVRPGTPPDFILKVVIDKHPVRFFVHKRPHVDFFLEV 120

Query: 153 MGELFECVLFTASLAKYADPVTDLLDRC-GVFRARLFRESCVFHQGCYVKDLSRLGRDLR 211
           + + +E V+FTAS+  Y   V D LD    + + R +R+ C    G Y+KDLS +  DL 
Sbjct: 121 VSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELGSYIKDLSVVHSDLS 180

Query: 212 KTLILDNSPASYIFHPENAVPVQSWFDDMADTELLNLIPIFEELSGAEDVYTSLGQ 267
             +ILDNSP +Y  HP+NA+P++SWF D +DT LLNL+P+ + L    DV + L +
Sbjct: 181 SIVILDNSPGAYRSHPDNAIPIKSWFSDPSDTALLNLLPMLDALRFTADVRSVLSR 236


>gi|48526509 translocase of inner mitochondrial membrane 50 homolog
           [Homo sapiens]
          Length = 456

 Score = 75.1 bits (183), Expect = 6e-14
 Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 19/181 (10%)

Query: 89  CLLPEVTEED--QGRICVVIDLDETLVHSSFKPINNADFIVPIEIEGTTHQVYVLKRPYV 146
           CLLP+  +E   Q    +V++L   L+H  +       F                KRP +
Sbjct: 236 CLLPDPLQEPYYQPPYTLVLELTGVLLHPEWSLATGWRF---------------KKRPGI 280

Query: 147 DEFLRRMGELFECVLFTASLAKYADPVTDLLDRCGVFRARLFRESCVFHQGCYVKDLSRL 206
           +   +++  L+E V+FT+     A P+ D +D  G    RLFR++  +  G +VKD+S L
Sbjct: 281 ETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCL 340

Query: 207 GRDLRKTLILDNSPASYIFHPENAVPVQSWFDDMADTELLNLIPIFE--ELSGAEDVYTS 264
            RD  + +++D    ++   P N V ++ W  +  D  LL+L    +   L+G EDV T 
Sbjct: 341 NRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTV 400

Query: 265 L 265
           L
Sbjct: 401 L 401


>gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II,
           polypeptide A) phosphatase, subunit 1 isoform FCP1b
           [Homo sapiens]
          Length = 867

 Score = 37.4 bits (85), Expect = 0.014
 Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 93  EVTEEDQGRI------CVVIDLDETLVHSSFKPINNADF--IVPIEIEGTTHQVYVLKRP 144
           ++  EDQ R+       +++DLD+TL+H++ +         I   ++      ++   RP
Sbjct: 168 QLGREDQQRLHRNRKLVLMVDLDQTLIHTTEQHCQQMSNKGIFHFQLGRGEPMLHTRLRP 227

Query: 145 YVDEFLRRMGELFECVLFTASLAKYADPVTDLLD-RCGVFRAR-LFRESCV 193
           +  +FL ++ +L+E  +FT     YA  +   LD    +F  R L R+ C+
Sbjct: 228 HCKDFLEKIAKLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECI 278


>gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II,
           polypeptide A) phosphatase, subunit 1 isoform FCP1a
           [Homo sapiens]
          Length = 961

 Score = 37.4 bits (85), Expect = 0.014
 Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 93  EVTEEDQGRI------CVVIDLDETLVHSSFKPINNADF--IVPIEIEGTTHQVYVLKRP 144
           ++  EDQ R+       +++DLD+TL+H++ +         I   ++      ++   RP
Sbjct: 168 QLGREDQQRLHRNRKLVLMVDLDQTLIHTTEQHCQQMSNKGIFHFQLGRGEPMLHTRLRP 227

Query: 145 YVDEFLRRMGELFECVLFTASLAKYADPVTDLLD-RCGVFRAR-LFRESCV 193
           +  +FL ++ +L+E  +FT     YA  +   LD    +F  R L R+ C+
Sbjct: 228 HCKDFLEKIAKLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECI 278


>gi|193083197 ubiquitin-like domain containing CTD phosphatase 1
           [Homo sapiens]
          Length = 318

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 29/147 (19%), Positives = 61/147 (41%), Gaps = 35/147 (23%)

Query: 141 LKRPYVDEFLRRMGELFECVLFTASLAKYAD--------------PVTDLLDRCGVFRAR 186
           L RPY+ EFL    E ++ V+++A+  K+ +               +T +LD   +    
Sbjct: 161 LMRPYLHEFLTSAYEDYDIVIWSATNMKWIEAKMKELGVSTNANYKITFMLDSAAMITVH 220

Query: 187 LFRESCVFHQGCYVKDLSRLG---------RDLRKTLILDNSPASYIFHPENAVPVQSW- 236
             R   +        D+  LG            + T++ D+   +++ +P+N + ++ + 
Sbjct: 221 TPRRGLI--------DVKPLGVIWGKFSEFYSKKNTIMFDDIGRNFLMNPQNGLKIRPFM 272

Query: 237 ---FDDMADTELLNLIPIFEELSGAED 260
               +   D ELL L    +E++  +D
Sbjct: 273 KAHLNRDKDKELLKLTQYLKEIAKLDD 299


>gi|24797106 UBX domain containing 8 [Homo sapiens]
          Length = 445

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 167 AKYADPVTDLLDRCGVFRARLFRESCVFHQGCYVKDLSRLGRDLRKTLI 215
           ++  DPV D++     F  +  R   VF+QG Y + L+   R+LR  L+
Sbjct: 127 SRVTDPVGDIVSFMHSFEEKYGRAHPVFYQGTYSQALNDAKRELRFLLV 175


>gi|169169865 PREDICTED: hypothetical protein LOC285754 [Homo
           sapiens]
          Length = 1151

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 19/71 (26%), Positives = 33/71 (46%)

Query: 11  RREDALVLTKQGLVSKSSPKKPRGRNIFKALFCCFRAQHVGQSSSSTELAAYKEEANTIA 70
           RRE  L L K   V++S P   +   + + L  C R ++  ++     L  Y E    +A
Sbjct: 107 RRERELALKKTLQVAESKPLVVQADAVQRELESCLRREYTPENLPLLLLQYYTERITQLA 166

Query: 71  KSDLLQCLQYQ 81
           +S  L  L+++
Sbjct: 167 QSKYLHMLRWK 177


>gi|169168870 PREDICTED: hypothetical protein LOC285754 [Homo
           sapiens]
          Length = 1151

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 19/71 (26%), Positives = 33/71 (46%)

Query: 11  RREDALVLTKQGLVSKSSPKKPRGRNIFKALFCCFRAQHVGQSSSSTELAAYKEEANTIA 70
           RRE  L L K   V++S P   +   + + L  C R ++  ++     L  Y E    +A
Sbjct: 107 RRERELALKKTLQVAESKPLVVQADAVQRELESCLRREYTPENLPLLLLQYYTERIAQLA 166

Query: 71  KSDLLQCLQYQ 81
           +S  L  L+++
Sbjct: 167 QSKYLHMLRWK 177


>gi|169169319 PREDICTED: hypothetical protein LOC285754 [Homo
           sapiens]
          Length = 1151

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 19/71 (26%), Positives = 33/71 (46%)

Query: 11  RREDALVLTKQGLVSKSSPKKPRGRNIFKALFCCFRAQHVGQSSSSTELAAYKEEANTIA 70
           RRE  L L K   V++S P   +   + + L  C R ++  ++     L  Y E    +A
Sbjct: 107 RRERELALKKTLQVAESKPLVVQADAVQRELESCLRREYTPENLPLLLLQYYTERIAQLA 166

Query: 71  KSDLLQCLQYQ 81
           +S  L  L+++
Sbjct: 167 QSKYLHMLRWK 177


>gi|30089999 actin-like 6A isoform 2 [Homo sapiens]
          Length = 387

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 14/124 (11%)

Query: 38  FKALFCCFRAQHVGQSSSSTELAAYKEEANTIAKSDLLQCLQYQFYQIPG--TCLLPEVT 95
           F+A+       HV   +S   +   +   NT AK + L  L ++ Y IP    C    +T
Sbjct: 57  FQAILDHTYKMHVKSEASLHPVLMSEAPWNTRAKREKLTELMFEHYNIPAFFLCKTAVLT 116

Query: 96  EEDQGRICVVIDLDETLVHSSFKPINNADFIVPIEIEGTTHQVYVLKRPYVDEFL-RRMG 154
               GR   +I LD    H++  P++          +G   Q  ++K P   +F+  +  
Sbjct: 117 AFANGRSTGLI-LDSGATHTTAIPVH----------DGYVLQQGIVKSPLAGDFITMQCR 165

Query: 155 ELFE 158
           ELF+
Sbjct: 166 ELFQ 169


>gi|30089997 actin-like 6A isoform 2 [Homo sapiens]
          Length = 387

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 14/124 (11%)

Query: 38  FKALFCCFRAQHVGQSSSSTELAAYKEEANTIAKSDLLQCLQYQFYQIPG--TCLLPEVT 95
           F+A+       HV   +S   +   +   NT AK + L  L ++ Y IP    C    +T
Sbjct: 57  FQAILDHTYKMHVKSEASLHPVLMSEAPWNTRAKREKLTELMFEHYNIPAFFLCKTAVLT 116

Query: 96  EEDQGRICVVIDLDETLVHSSFKPINNADFIVPIEIEGTTHQVYVLKRPYVDEFL-RRMG 154
               GR   +I LD    H++  P++          +G   Q  ++K P   +F+  +  
Sbjct: 117 AFANGRSTGLI-LDSGATHTTAIPVH----------DGYVLQQGIVKSPLAGDFITMQCR 165

Query: 155 ELFE 158
           ELF+
Sbjct: 166 ELFQ 169


>gi|4757718 actin-like 6A isoform 1 [Homo sapiens]
          Length = 429

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 14/124 (11%)

Query: 38  FKALFCCFRAQHVGQSSSSTELAAYKEEANTIAKSDLLQCLQYQFYQIPG--TCLLPEVT 95
           F+A+       HV   +S   +   +   NT AK + L  L ++ Y IP    C    +T
Sbjct: 99  FQAILDHTYKMHVKSEASLHPVLMSEAPWNTRAKREKLTELMFEHYNIPAFFLCKTAVLT 158

Query: 96  EEDQGRICVVIDLDETLVHSSFKPINNADFIVPIEIEGTTHQVYVLKRPYVDEFL-RRMG 154
               GR   +I LD    H++  P++          +G   Q  ++K P   +F+  +  
Sbjct: 159 AFANGRSTGLI-LDSGATHTTAIPVH----------DGYVLQQGIVKSPLAGDFITMQCR 207

Query: 155 ELFE 158
           ELF+
Sbjct: 208 ELFQ 211


>gi|186659512 calmodulin regulated spectrin-associated protein 1 [Homo
            sapiens]
          Length = 1602

 Score = 28.1 bits (61), Expect = 8.5
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 11   RREDALVLTKQGLVS-KSSPKKPRGRNIFKALFC 43
            RR+   +L +QGL   KS PKKPR +++ +   C
Sbjct: 1346 RRKQQQILEEQGLGKPKSKPKKPRPKSVHREESC 1379


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.138    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,949,290
Number of Sequences: 37866
Number of extensions: 425318
Number of successful extensions: 782
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 756
Number of HSP's gapped (non-prelim): 20
length of query: 271
length of database: 18,247,518
effective HSP length: 101
effective length of query: 170
effective length of database: 14,423,052
effective search space: 2451918840
effective search space used: 2451918840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.