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Search of human proteins with 9256614
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|9256614 protocadherin beta 3 precursor [Homo sapiens]
(796 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|9256614 protocadherin beta 3 precursor [Homo sapiens] 1562 0.0
gi|9256612 protocadherin beta 2 precursor [Homo sapiens] 1251 0.0
gi|9256610 protocadherin beta 15 precursor [Homo sapiens] 1211 0.0
gi|9256618 protocadherin beta 6 precursor [Homo sapiens] 1207 0.0
gi|14195605 protocadherin beta 16 precursor [Homo sapiens] 1204 0.0
gi|9256608 protocadherin beta 14 precursor [Homo sapiens] 1204 0.0
gi|11036654 protocadherin beta 13 precursor [Homo sapiens] 1202 0.0
gi|11276081 protocadherin beta 8 precursor [Homo sapiens] 1201 0.0
gi|9256616 protocadherin beta 4 precursor [Homo sapiens] 1198 0.0
gi|7661662 protocadherin beta 5 precursor [Homo sapiens] 1190 0.0
gi|9256604 protocadherin beta 11 precursor [Homo sapiens] 1179 0.0
gi|9256606 protocadherin beta 12 precursor [Homo sapiens] 1172 0.0
gi|9256602 protocadherin beta 10 precursor [Homo sapiens] 1170 0.0
gi|14195616 protocadherin beta 9 precursor [Homo sapiens] 1169 0.0
gi|11036656 protocadherin beta 7 precursor [Homo sapiens] 1161 0.0
gi|14195607 protocadherin beta 1 precursor [Homo sapiens] 788 0.0
gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precurs... 647 0.0
gi|14196477 protocadherin gamma subfamily A, 7 isoform 2 precurs... 647 0.0
gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precurs... 645 0.0
gi|14270487 protocadherin gamma subfamily A, 9 isoform 2 precurs... 645 0.0
gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precurs... 640 0.0
gi|14196474 protocadherin gamma subfamily A, 6 isoform 2 precurs... 640 0.0
gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precurs... 639 0.0
gi|14196459 protocadherin gamma subfamily A, 1 isoform 2 precurs... 639 0.0
gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precur... 637 0.0
gi|14196448 protocadherin gamma subfamily A, 10 isoform 2 precur... 637 0.0
gi|11056030 protocadherin gamma subfamily A, 2 isoform 1 precurs... 637 0.0
gi|14196462 protocadherin gamma subfamily A, 2 isoform 2 precurs... 637 0.0
gi|14196468 protocadherin gamma subfamily A, 4 isoform 2 precurs... 634 0.0
gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precurs... 634 0.0
>gi|9256614 protocadherin beta 3 precursor [Homo sapiens]
Length = 796
Score = 1562 bits (4044), Expect = 0.0
Identities = 796/796 (100%), Positives = 796/796 (100%)
Query: 1 MEAGGERFLRQRQVLLLFVFLGGSLAGSESRRYSVAEEKEKGFLIANLAKDLGLRVEELA 60
MEAGGERFLRQRQVLLLFVFLGGSLAGSESRRYSVAEEKEKGFLIANLAKDLGLRVEELA
Sbjct: 1 MEAGGERFLRQRQVLLLFVFLGGSLAGSESRRYSVAEEKEKGFLIANLAKDLGLRVEELA 60
Query: 61 ARGAQVVSKGNKQHFQLSHQTGDLLLNEKLDREELCGPTEPCILHFQILLQNPLQFVTNE 120
ARGAQVVSKGNKQHFQLSHQTGDLLLNEKLDREELCGPTEPCILHFQILLQNPLQFVTNE
Sbjct: 61 ARGAQVVSKGNKQHFQLSHQTGDLLLNEKLDREELCGPTEPCILHFQILLQNPLQFVTNE 120
Query: 121 LRIIDVNDHSPVFFENEMHLKILESTLPGTVIPLGNAEDLDVGRNSLQNYTITPNSHFHV 180
LRIIDVNDHSPVFFENEMHLKILESTLPGTVIPLGNAEDLDVGRNSLQNYTITPNSHFHV
Sbjct: 121 LRIIDVNDHSPVFFENEMHLKILESTLPGTVIPLGNAEDLDVGRNSLQNYTITPNSHFHV 180
Query: 181 LTRSRRDGRKYPELVLDKALDREEQPELSLTLTALDGGSPPRSGTAQINIQVLDINDNAP 240
LTRSRRDGRKYPELVLDKALDREEQPELSLTLTALDGGSPPRSGTAQINIQVLDINDNAP
Sbjct: 181 LTRSRRDGRKYPELVLDKALDREEQPELSLTLTALDGGSPPRSGTAQINIQVLDINDNAP 240
Query: 241 EFAQPLYEVAVLENTPVNSVIVTVSASDLDTGSFGTISYAFFHASEEIRKTFQLNPITGD 300
EFAQPLYEVAVLENTPVNSVIVTVSASDLDTGSFGTISYAFFHASEEIRKTFQLNPITGD
Sbjct: 241 EFAQPLYEVAVLENTPVNSVIVTVSASDLDTGSFGTISYAFFHASEEIRKTFQLNPITGD 300
Query: 301 MQLVKYLNFEAINSYEVDIEAKDGGGLSGKSTVIVQVVDVNDNPPELTLSSVNSPIPENS 360
MQLVKYLNFEAINSYEVDIEAKDGGGLSGKSTVIVQVVDVNDNPPELTLSSVNSPIPENS
Sbjct: 301 MQLVKYLNFEAINSYEVDIEAKDGGGLSGKSTVIVQVVDVNDNPPELTLSSVNSPIPENS 360
Query: 361 GETVLAVFSVSDLDSGDNGRVMCSIENNLPFFLKPSVENFYTLVSEGALDRETRSEYNIT 420
GETVLAVFSVSDLDSGDNGRVMCSIENNLPFFLKPSVENFYTLVSEGALDRETRSEYNIT
Sbjct: 361 GETVLAVFSVSDLDSGDNGRVMCSIENNLPFFLKPSVENFYTLVSEGALDRETRSEYNIT 420
Query: 421 ITITDLGTPRLKTKYNITVLVSDVNDNAPAFTQISYTLFVRENNSPALHIGSVSATDRDS 480
ITITDLGTPRLKTKYNITVLVSDVNDNAPAFTQISYTLFVRENNSPALHIGSVSATDRDS
Sbjct: 421 ITITDLGTPRLKTKYNITVLVSDVNDNAPAFTQISYTLFVRENNSPALHIGSVSATDRDS 480
Query: 481 GTNAQVTYSLLPPQDPHLPLSSLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPA 540
GTNAQVTYSLLPPQDPHLPLSSLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPA
Sbjct: 481 GTNAQVTYSLLPPQDPHLPLSSLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPA 540
Query: 541 LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA 600
LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA
Sbjct: 541 LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA 600
Query: 601 WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV 660
WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV
Sbjct: 601 WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV 660
Query: 661 LLVDGFSQPYLPLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA 720
LLVDGFSQPYLPLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA
Sbjct: 661 LLVDGFSQPYLPLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA 720
Query: 721 SVGRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQGAE 780
SVGRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQGAE
Sbjct: 721 SVGRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQGAE 780
Query: 781 RVSEANPSFRKSFEFS 796
RVSEANPSFRKSFEFS
Sbjct: 781 RVSEANPSFRKSFEFS 796
>gi|9256612 protocadherin beta 2 precursor [Homo sapiens]
Length = 798
Score = 1251 bits (3238), Expect = 0.0
Identities = 640/798 (80%), Positives = 702/798 (87%), Gaps = 2/798 (0%)
Query: 1 MEAGG--ERFLRQRQVLLLFVFLGGSLAGSESRRYSVAEEKEKGFLIANLAKDLGLRVEE 58
MEAG ER +QRQVL+ FV LG + A + R YSVAEE E G +ANL KDLGL + E
Sbjct: 1 MEAGEGKERVPKQRQVLIFFVLLGIAQASCQPRHYSVAEETESGSFVANLLKDLGLEIGE 60
Query: 59 LAARGAQVVSKGNKQHFQLSHQTGDLLLNEKLDREELCGPTEPCILHFQILLQNPLQFVT 118
LA RGA+VVSKG K H Q QTGDLLLNEKLDREELCGPTEPC+L FQ+LL+NPLQF
Sbjct: 61 LAVRGARVVSKGKKMHLQFDRQTGDLLLNEKLDREELCGPTEPCVLPFQVLLENPLQFFQ 120
Query: 119 NELRIIDVNDHSPVFFENEMHLKILESTLPGTVIPLGNAEDLDVGRNSLQNYTITPNSHF 178
ELRI DVNDHSPVF + E+ LKI ES PGT + A+DLDVG NSLQNYTI+PN HF
Sbjct: 121 AELRIRDVNDHSPVFLDKEILLKIPESITPGTTFLIERAQDLDVGTNSLQNYTISPNFHF 180
Query: 179 HVLTRSRRDGRKYPELVLDKALDREEQPELSLTLTALDGGSPPRSGTAQINIQVLDINDN 238
H+ + DG P+LVL++ALDREEQPE+ LTLTALDGGSPPRSGTA + I+V+DINDN
Sbjct: 181 HLNLQDSLDGIILPQLVLNRALDREEQPEIRLTLTALDGGSPPRSGTALVRIEVVDINDN 240
Query: 239 APEFAQPLYEVAVLENTPVNSVIVTVSASDLDTGSFGTISYAFFHASEEIRKTFQLNPIT 298
PEFA+ LYEV + E++PV S + VSA DLD G+ G ISYAF ASE+IRKTF+L+ +
Sbjct: 241 VPEFAKLLYEVQIPEDSPVGSQVAIVSARDLDIGTNGEISYAFSQASEDIRKTFRLSAKS 300
Query: 299 GDMQLVKYLNFEAINSYEVDIEAKDGGGLSGKSTVIVQVVDVNDNPPELTLSSVNSPIPE 358
G++ L + L+FE+I +Y V+I+A DGGGLSG V VQV+D+NDNPPELT+S++ + IPE
Sbjct: 301 GELLLRQKLDFESIQTYTVNIQATDGGGLSGTCVVFVQVMDLNDNPPELTMSTLINQIPE 360
Query: 359 NSGETVLAVFSVSDLDSGDNGRVMCSIENNLPFFLKPSVENFYTLVSEGALDRETRSEYN 418
N +T++AVFSVSD DSGDNGR++CSI+++LPFFLKPSVENFYTLV ALDRETRSEYN
Sbjct: 361 NLQDTLIAVFSVSDPDSGDNGRMVCSIQDDLPFFLKPSVENFYTLVISTALDRETRSEYN 420
Query: 419 ITITITDLGTPRLKTKYNITVLVSDVNDNAPAFTQISYTLFVRENNSPALHIGSVSATDR 478
ITIT+TD GTPRLKT++NITVLVSDVNDNAPAFTQ SYTLFVRENNSPALHIGSVSATDR
Sbjct: 421 ITITVTDFGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDR 480
Query: 479 DSGTNAQVTYSLLPPQDPHLPLSSLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGS 538
DSGTNAQVTYSLLPPQDPHLPL+SLVSINADNGHLFAL+SLDYEALQAFEFRVGA DRGS
Sbjct: 481 DSGTNAQVTYSLLPPQDPHLPLASLVSINADNGHLFALQSLDYEALQAFEFRVGAADRGS 540
Query: 539 PALSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQ 598
PALSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQ
Sbjct: 541 PALSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQ 600
Query: 599 NAWLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATL 658
NAWLSYQLLKATEPGLFGVWAHNGEVRTARLL ERDAAK RLVVLVKDNGEPPRSATATL
Sbjct: 601 NAWLSYQLLKATEPGLFGVWAHNGEVRTARLLRERDAAKQRLVVLVKDNGEPPRSATATL 660
Query: 659 HVLLVDGFSQPYLPLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSR 718
HVLLVDGFSQPYL LPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSR
Sbjct: 661 HVLLVDGFSQPYLLLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSR 720
Query: 719 AASVGRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQG 778
AASVGRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQG
Sbjct: 721 AASVGRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQG 780
Query: 779 AERVSEANPSFRKSFEFS 796
AERVSEANPSFRKSFEF+
Sbjct: 781 AERVSEANPSFRKSFEFT 798
>gi|9256610 protocadherin beta 15 precursor [Homo sapiens]
Length = 787
Score = 1211 bits (3133), Expect = 0.0
Identities = 614/784 (78%), Positives = 688/784 (87%)
Query: 1 MEAGGERFLRQRQVLLLFVFLGGSLAGSESRRYSVAEEKEKGFLIANLAKDLGLRVEELA 60
ME GERF QRQVL+L + L +LAG E RRYSV EE E+G +ANLA DLGL V ELA
Sbjct: 1 MEPAGERFPEQRQVLILLLLLEVTLAGWEPRRYSVMEETERGSFVANLANDLGLGVGELA 60
Query: 61 ARGAQVVSKGNKQHFQLSHQTGDLLLNEKLDREELCGPTEPCILHFQILLQNPLQFVTNE 120
RGA+VVS+ N+Q QL QTG L+LNEKLDRE+LCGPTEPCI+HFQ+LL+ PL+ E
Sbjct: 61 ERGARVVSEDNEQGLQLDLQTGQLILNEKLDREKLCGPTEPCIMHFQVLLKKPLEVFRAE 120
Query: 121 LRIIDVNDHSPVFFENEMHLKILESTLPGTVIPLGNAEDLDVGRNSLQNYTITPNSHFHV 180
L + D+NDHSP F E EM LKI E++ GTV PL A DLDVG N++QNY I+PNSHFHV
Sbjct: 121 LLVTDINDHSPEFPEREMTLKIPETSSLGTVFPLKKARDLDVGSNNVQNYNISPNSHFHV 180
Query: 181 LTRSRRDGRKYPELVLDKALDREEQPELSLTLTALDGGSPPRSGTAQINIQVLDINDNAP 240
TR+R DGRKYPELVLD LDREEQ EL LTLTA+DGGSPPRSGT QI I VLD NDNAP
Sbjct: 181 STRTRGDGRKYPELVLDTELDREEQAELRLTLTAVDGGSPPRSGTVQILILVLDANDNAP 240
Query: 241 EFAQPLYEVAVLENTPVNSVIVTVSASDLDTGSFGTISYAFFHASEEIRKTFQLNPITGD 300
EF Q LYEV V EN+PV S++V VSA DLDTG+ G ISY+ +++S+EI K F+L+ ++G+
Sbjct: 241 EFVQALYEVQVPENSPVGSLVVKVSARDLDTGTNGEISYSLYYSSQEIDKPFELSSLSGE 300
Query: 301 MQLVKYLNFEAINSYEVDIEAKDGGGLSGKSTVIVQVVDVNDNPPELTLSSVNSPIPENS 360
++L+K L+FE ++SY++DIEA DGGGLSGK +V V+V+DVNDN PEL++SS+ SPIPENS
Sbjct: 301 IRLIKKLDFETMSSYDLDIEASDGGGLSGKCSVSVKVLDVNDNFPELSISSLTSPIPENS 360
Query: 361 GETVLAVFSVSDLDSGDNGRVMCSIENNLPFFLKPSVENFYTLVSEGALDRETRSEYNIT 420
ET +A+F + D DSG+NG+++CSI++++PF LKPSVENFY LV+EGALDRETR+EYNIT
Sbjct: 361 PETEVALFRIRDRDSGENGKMICSIQDDVPFKLKPSVENFYRLVTEGALDRETRAEYNIT 420
Query: 421 ITITDLGTPRLKTKYNITVLVSDVNDNAPAFTQISYTLFVRENNSPALHIGSVSATDRDS 480
ITITDLGTPRLKT+ +ITVLVSDVNDNAPAFTQ SYTLFVRENNSPALHIGSVSATDRDS
Sbjct: 421 ITITDLGTPRLKTEQSITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDS 480
Query: 481 GTNAQVTYSLLPPQDPHLPLSSLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPA 540
GTNAQVTYSLLPP+DPHLPL+SLVSIN DNGHLFAL+SLDYEALQAFEFRVGATDRG PA
Sbjct: 481 GTNAQVTYSLLPPRDPHLPLTSLVSINTDNGHLFALQSLDYEALQAFEFRVGATDRGFPA 540
Query: 541 LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA 600
LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA
Sbjct: 541 LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA 600
Query: 601 WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV 660
WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERD AKHRLVVLVKDNGEPPRSATATL V
Sbjct: 601 WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDVAKHRLVVLVKDNGEPPRSATATLQV 660
Query: 661 LLVDGFSQPYLPLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA 720
LLVDGFSQPYLPLPEAAPAQAQAD LTVYLVVALASVSSLFLFSV LFVAVRLCRRSRAA
Sbjct: 661 LLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVFLFVAVRLCRRSRAA 720
Query: 721 SVGRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQGAE 780
SVGRCSVPEGPFPG +VDVSGTGTLSQSYQYEVCLTGGS +N+FKFLKPI PN V+Q +
Sbjct: 721 SVGRCSVPEGPFPGHLVDVSGTGTLSQSYQYEVCLTGGSESNDFKFLKPIFPNIVSQDSR 780
Query: 781 RVSE 784
R SE
Sbjct: 781 RKSE 784
>gi|9256618 protocadherin beta 6 precursor [Homo sapiens]
Length = 794
Score = 1207 bits (3124), Expect = 0.0
Identities = 614/787 (78%), Positives = 677/787 (86%), Gaps = 1/787 (0%)
Query: 10 RQRQVLLLFVFLGGSLAGSESRRYSVAEEKEKGFLIANLAKDLGLRVEELAARGAQVVSK 69
++RQV + + GSES +YSV EE E G +ANL KDLGLRV ELA+RGA+VV K
Sbjct: 9 KKRQVAFFILLMLWGEVGSESIQYSVLEETESGTFVANLTKDLGLRVGELASRGARVVFK 68
Query: 70 GNKQHFQLSHQTGDLLLNEKLDREELCGPTEPCILHFQILLQNPLQFVTNELRIIDVNDH 129
GN+QH Q QT DLLLNEKLDREELCG TEPC+L FQ+LL+NPLQF LR+ D+NDH
Sbjct: 69 GNRQHLQFDPQTHDLLLNEKLDREELCGSTEPCVLPFQVLLENPLQFFQASLRVRDINDH 128
Query: 130 SPVFFENEMHLKILESTLPGTVIPLGNAEDLDVGRNSLQNYTITPNSHFHVLTRSRRDGR 189
+P F EM LKI E T+PG + PL A DLD G N LQ YTI+ N HFHVLTR+R +GR
Sbjct: 129 APEFPAREMLLKISEITMPGKIFPLKMAHDLDTGSNGLQRYTISSNPHFHVLTRNRSEGR 188
Query: 190 KYPELVLDKALDREEQPELSLTLTALDGGSPPRSGTAQINIQVLDINDNAPEFAQPLYEV 249
K+PELVLDK LDREEQP+L LTL ALDGGSPPRSGT++I IQVLDINDN PEFAQ LYE
Sbjct: 189 KFPELVLDKPLDREEQPQLRLTLIALDGGSPPRSGTSEIQIQVLDINDNVPEFAQELYEA 248
Query: 250 AVLENTPVNSVIVTVSASDLDTGSFGTISYAFFHASEEIRKTFQLNPITGDMQLVKYLNF 309
V EN P+ S+++TVSA DLD GSFG +SYA F +++ + F++N ITG+++L K L+F
Sbjct: 249 QVPENNPLGSLVITVSARDLDAGSFGKVSYALFQV-DDVNQPFEINAITGEIRLRKALDF 307
Query: 310 EAINSYEVDIEAKDGGGLSGKSTVIVQVVDVNDNPPELTLSSVNSPIPENSGETVLAVFS 369
E I SY+VD+EA DGGGLSGK +++V+V+DVNDN PELT+S S IPEN E +AVFS
Sbjct: 308 EEIQSYDVDVEATDGGGLSGKCSLVVRVLDVNDNAPELTMSFFISLIPENLPEITVAVFS 367
Query: 370 VSDLDSGDNGRVMCSIENNLPFFLKPSVENFYTLVSEGALDRETRSEYNITITITDLGTP 429
VSD DSG N +V+CSIENNLPF L+PSVENFYTLV+EGALDRE+R+EYNITIT+TDLGTP
Sbjct: 368 VSDADSGHNQQVICSIENNLPFLLRPSVENFYTLVTEGALDRESRAEYNITITVTDLGTP 427
Query: 430 RLKTKYNITVLVSDVNDNAPAFTQISYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYS 489
RLKT+ +ITV VSDVNDN PAFTQ SYTLFVRENNSPALHIGSVSATDRDSG NAQVTYS
Sbjct: 428 RLKTQQSITVQVSDVNDNVPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGINAQVTYS 487
Query: 490 LLPPQDPHLPLSSLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSSEALVRV 549
LLPPQDPHLPLSSLVSINADNGHLFALRSLDYEALQ+FEFRVGATDRGSPALSSEALVR+
Sbjct: 488 LLPPQDPHLPLSSLVSINADNGHLFALRSLDYEALQSFEFRVGATDRGSPALSSEALVRL 547
Query: 550 LVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKA 609
LVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKA
Sbjct: 548 LVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKA 607
Query: 610 TEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQP 669
TE GLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQP
Sbjct: 608 TELGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQP 667
Query: 670 YLPLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCSVPE 729
YLPLPEAAPAQAQAD LTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGR SVPE
Sbjct: 668 YLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRYSVPE 727
Query: 730 GPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQGAERVSEANPSF 789
GPFPG +VDVSGTGTLSQSYQY+VCLTGGS TNEFKFLKPI+PNF QG ER E P+
Sbjct: 728 GPFPGHLVDVSGTGTLSQSYQYKVCLTGGSETNEFKFLKPIMPNFPPQGTEREMEETPTS 787
Query: 790 RKSFEFS 796
R SF FS
Sbjct: 788 RNSFPFS 794
>gi|14195605 protocadherin beta 16 precursor [Homo sapiens]
Length = 776
Score = 1204 bits (3116), Expect = 0.0
Identities = 601/774 (77%), Positives = 682/774 (88%)
Query: 1 MEAGGERFLRQRQVLLLFVFLGGSLAGSESRRYSVAEEKEKGFLIANLAKDLGLRVEELA 60
ME G RQRQVL+ FV L S AG+E YSV EE E+G +ANL KDLGL + E++
Sbjct: 1 MEIGWMHNRRQRQVLVFFVLLSLSGAGAELGSYSVVEETERGSFVANLGKDLGLGLTEMS 60
Query: 61 ARGAQVVSKGNKQHFQLSHQTGDLLLNEKLDREELCGPTEPCILHFQILLQNPLQFVTNE 120
R A+++S+GNKQH QL QTGDLL+NEKLDREELCGPTEPCILHFQ+L++NPL+ E
Sbjct: 61 TRKARIISQGNKQHLQLKAQTGDLLINEKLDREELCGPTEPCILHFQVLMENPLEIFQAE 120
Query: 121 LRIIDVNDHSPVFFENEMHLKILESTLPGTVIPLGNAEDLDVGRNSLQNYTITPNSHFHV 180
LR+ID+NDHSP+F E EM LKI E++ GT PL +A DLDVG N++QNY I+P+SHF V
Sbjct: 121 LRVIDINDHSPMFTEKEMILKIPENSPLGTEFPLNHALDLDVGSNNVQNYKISPSSHFRV 180
Query: 181 LTRSRRDGRKYPELVLDKALDREEQPELSLTLTALDGGSPPRSGTAQINIQVLDINDNAP 240
L RDGRKYPELVLDK LDREE+P+L LTLTALDGGSPPRSGTAQ+ I+V+DINDNAP
Sbjct: 181 LIHEFRDGRKYPELVLDKELDREEEPQLRLTLTALDGGSPPRSGTAQVRIEVVDINDNAP 240
Query: 241 EFAQPLYEVAVLENTPVNSVIVTVSASDLDTGSFGTISYAFFHASEEIRKTFQLNPITGD 300
EF QP+Y+V + EN+P+ S++ TVSA DLD G+ G ISY F SE+I KT ++NP+TG+
Sbjct: 241 EFEQPIYKVQIPENSPLGSLVATVSARDLDGGANGKISYTLFQPSEDISKTLEVNPMTGE 300
Query: 301 MQLVKYLNFEAINSYEVDIEAKDGGGLSGKSTVIVQVVDVNDNPPELTLSSVNSPIPENS 360
++L K ++FE + SYEV I+A DGGGLSGK T+++QVVDVNDNPP++T+S++ SPIPENS
Sbjct: 301 VRLRKQVDFEMVTSYEVRIKATDGGGLSGKCTLLLQVVDVNDNPPQVTMSALTSPIPENS 360
Query: 361 GETVLAVFSVSDLDSGDNGRVMCSIENNLPFFLKPSVENFYTLVSEGALDRETRSEYNIT 420
E V+AVFSVSD DSG+NG+ + SI+ +LPF LKPSV+NFYTLV+E ALDRE R+EYNIT
Sbjct: 361 PEIVVAVFSVSDPDSGNNGKTISSIQEDLPFLLKPSVKNFYTLVTERALDREARAEYNIT 420
Query: 421 ITITDLGTPRLKTKYNITVLVSDVNDNAPAFTQISYTLFVRENNSPALHIGSVSATDRDS 480
+T+TD+GTPRLKT++NITV +SDVNDNAP FTQ SYTLFVRENNSPALHIGSVSATDRDS
Sbjct: 421 LTVTDMGTPRLKTEHNITVQISDVNDNAPTFTQTSYTLFVRENNSPALHIGSVSATDRDS 480
Query: 481 GTNAQVTYSLLPPQDPHLPLSSLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPA 540
GTNAQVTYSLLPPQDPHLPL+SLVSINADNGHLFALRSLDYEAL+ FEFRV ATDRGSPA
Sbjct: 481 GTNAQVTYSLLPPQDPHLPLASLVSINADNGHLFALRSLDYEALREFEFRVSATDRGSPA 540
Query: 541 LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA 600
LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA
Sbjct: 541 LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA 600
Query: 601 WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV 660
WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAK RLVVLVKDNGEPPRSATATLHV
Sbjct: 601 WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKQRLVVLVKDNGEPPRSATATLHV 660
Query: 661 LLVDGFSQPYLPLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA 720
LLVDGFSQP+LPLPEAAP Q QA+ LTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA
Sbjct: 661 LLVDGFSQPFLPLPEAAPGQTQANSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA 720
Query: 721 SVGRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNF 774
SVGRCS+PEGPFPG++VDVSGTGTLSQSYQYEVCLTGGS T+EFKFLKPIIPNF
Sbjct: 721 SVGRCSMPEGPFPGRLVDVSGTGTLSQSYQYEVCLTGGSETSEFKFLKPIIPNF 774
>gi|9256608 protocadherin beta 14 precursor [Homo sapiens]
Length = 798
Score = 1204 bits (3114), Expect = 0.0
Identities = 606/793 (76%), Positives = 685/793 (86%)
Query: 1 MEAGGERFLRQRQVLLLFVFLGGSLAGSESRRYSVAEEKEKGFLIANLAKDLGLRVEELA 60
ME G LR+RQVL+ V LG S AG+ES YSVAEE E G +ANLA+DLGL VEEL+
Sbjct: 1 MEIRGALDLRKRQVLIFLVLLGLSRAGTESAHYSVAEETEIGSFVANLARDLGLGVEELS 60
Query: 61 ARGAQVVSKGNKQHFQLSHQTGDLLLNEKLDREELCGPTEPCILHFQILLQNPLQFVTNE 120
+R A+VVS NK++ L TG+LLLNEKLDR+ELCG TEPC+LHFQ++L+NPLQF E
Sbjct: 61 SREARVVSDDNKKYLHLDLLTGNLLLNEKLDRDELCGSTEPCVLHFQVVLENPLQFFRFE 120
Query: 121 LRIIDVNDHSPVFFENEMHLKILESTLPGTVIPLGNAEDLDVGRNSLQNYTITPNSHFHV 180
L + D+NDHSP F + E+ +KI E T G + +A+DLDVG NSLQNYTI+PNSHF++
Sbjct: 121 LCVKDINDHSPTFLDKEILIKISEGTTVGATFLMESAQDLDVGSNSLQNYTISPNSHFYI 180
Query: 181 LTRSRRDGRKYPELVLDKALDREEQPELSLTLTALDGGSPPRSGTAQINIQVLDINDNAP 240
D + YPELVLD+ALD E++ EL LTLTA+DGGSPP+SGT + I+VLDINDNAP
Sbjct: 181 KIPDSSDRKIYPELVLDRALDYEQEAELRLTLTAVDGGSPPKSGTTLVLIKVLDINDNAP 240
Query: 241 EFAQPLYEVAVLENTPVNSVIVTVSASDLDTGSFGTISYAFFHASEEIRKTFQLNPITGD 300
EF Q LYEV V E+ P+ S I T+SA DLD G++G ISY FFHASE+IRKTF++NPI+G+
Sbjct: 241 EFPQSLYEVQVPEDRPLGSWIATISAKDLDAGNYGKISYTFFHASEDIRKTFEINPISGE 300
Query: 301 MQLVKYLNFEAINSYEVDIEAKDGGGLSGKSTVIVQVVDVNDNPPELTLSSVNSPIPENS 360
+ L L+FE I SY ++I+A DGGGLSGK T++V+V+D+NDNPPE+T+SS+ IPEN+
Sbjct: 301 VNLRSPLDFEVIQSYTINIQATDGGGLSGKCTLLVKVMDINDNPPEVTISSITKRIPENA 360
Query: 361 GETVLAVFSVSDLDSGDNGRVMCSIENNLPFFLKPSVENFYTLVSEGALDRETRSEYNIT 420
ET++A+FS+ D DSGDNGR++CSI++NLPFFLKP+ +NF+TLVSE ALDRE+++EYNIT
Sbjct: 361 SETLVALFSILDQDSGDNGRMICSIQDNLPFFLKPTFKNFFTLVSEKALDRESQAEYNIT 420
Query: 421 ITITDLGTPRLKTKYNITVLVSDVNDNAPAFTQISYTLFVRENNSPALHIGSVSATDRDS 480
IT+TDLGTPRLKT+YNITVL+SDVNDNAP FTQ SYTLFVRENNSPALHIGSVSATDRDS
Sbjct: 421 ITVTDLGTPRLKTEYNITVLLSDVNDNAPTFTQTSYTLFVRENNSPALHIGSVSATDRDS 480
Query: 481 GTNAQVTYSLLPPQDPHLPLSSLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPA 540
GTNAQV YSLLPPQD HLPL+SLVSINADNGHLFALRSLDYEALQ FEFRVGATDRGSPA
Sbjct: 481 GTNAQVNYSLLPPQDRHLPLASLVSINADNGHLFALRSLDYEALQEFEFRVGATDRGSPA 540
Query: 541 LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA 600
LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA
Sbjct: 541 LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA 600
Query: 601 WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV 660
WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV
Sbjct: 601 WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV 660
Query: 661 LLVDGFSQPYLPLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA 720
LLVDGFSQPYLPLPEAAPAQAQAD LTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA
Sbjct: 661 LLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA 720
Query: 721 SVGRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQGAE 780
SVGRCSVPEGPFPG +VDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNF
Sbjct: 721 SVGRCSVPEGPFPGHLVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFQVHDTG 780
Query: 781 RVSEANPSFRKSF 793
R +FR SF
Sbjct: 781 RNMGEIENFRNSF 793
>gi|11036654 protocadherin beta 13 precursor [Homo sapiens]
Length = 798
Score = 1202 bits (3111), Expect = 0.0
Identities = 603/797 (75%), Positives = 689/797 (86%), Gaps = 2/797 (0%)
Query: 1 MEAGGERFLRQRQVLLLFVFLGGSLAGS-ESRRYSVAEEKEKGFLIANLAKDLGLRVEEL 59
MEA G+ RQRQVL F+ LG SLAG+ E R YSV EE E + NLAKDLGL E
Sbjct: 1 MEASGKLICRQRQVLFSFLLLGLSLAGAAEPRSYSVVEETEGSSFVTNLAKDLGLEQREF 60
Query: 60 AARGAQVVSKGNKQHFQLSHQTGDLLLNEKLDREELCGPTEPCILHFQILLQNPLQFVTN 119
+ RG +VVS+GNK H QL+ +T DLLLNEKLDRE+LCG TEPC+L FQ+LL++P +F
Sbjct: 61 SRRGVRVVSRGNKLHLQLNQETADLLLNEKLDREDLCGHTEPCVLRFQVLLESPFEFFQA 120
Query: 120 ELRIIDVNDHSPVFFENEMHLKILESTLPGTVIPLGNAEDLDVGRNSLQNYTITPNSHFH 179
EL++ID+NDHSPVF + +M +K+ ES+ PGT PL NAEDLDVG+N+++NY I+PNS+F
Sbjct: 121 ELQVIDINDHSPVFLDKQMLVKVSESSPPGTTFPLKNAEDLDVGQNNIENYIISPNSYFR 180
Query: 180 VLTRSRRDGRKYPELVLDKALDREEQPELSLTLTALDGGSPPRSGTAQINIQVLDINDNA 239
VLTR R DGRKYPELVLDKALDREE+ EL LTLTALDGGSPPRSGTAQ+ I+VLD+NDNA
Sbjct: 181 VLTRKRSDGRKYPELVLDKALDREEEAELRLTLTALDGGSPPRSGTAQVYIEVLDVNDNA 240
Query: 240 PEFAQPLYEVAVLENTPVNSVIVTVSASDLDTGSFGTISYAFFHASEEIRKTFQLNPITG 299
PEF QP Y V + E++PV ++V VSA+D+DTG G ISY+ F ASEEI KTF++NP+TG
Sbjct: 241 PEFEQPFYRVQISEDSPVGFLVVKVSATDVDTGVNGEISYSLFQASEEIGKTFKINPLTG 300
Query: 300 DMQLVKYLNFEAINSYEVDIEAKDGGGLSGKSTVIVQVVDVNDNPPELTLSSVNSPIPEN 359
+++L K L+FE + SYEV+IEA+D G SGK TV++QV+DVND+ PE+T+S+ SPIPEN
Sbjct: 301 EIELKKQLDFEKLQSYEVNIEARDAGTFSGKCTVLIQVIDVNDHAPEVTMSAFTSPIPEN 360
Query: 360 SGETVLAVFSVSDLDSGDNGRVMCSIENNLPFFLKPSVENFYTLVSEGALDRETRSEYNI 419
+ ETV+A+FSVSDLDSG+NG++ CSI+ +LPF LK S ENFYTL++E LDRE+R+EYNI
Sbjct: 361 APETVVALFSVSDLDSGENGKISCSIQEDLPFLLK-SAENFYTLLTERPLDRESRAEYNI 419
Query: 420 TITITDLGTPRLKTKYNITVLVSDVNDNAPAFTQISYTLFVRENNSPALHIGSVSATDRD 479
TIT+TDLGTP L T+ N+TVL++DVNDNAPAFTQ SYTLFVRENNSPALHI SVSATDRD
Sbjct: 420 TITVTDLGTPMLITQLNMTVLIADVNDNAPAFTQTSYTLFVRENNSPALHIRSVSATDRD 479
Query: 480 SGTNAQVTYSLLPPQDPHLPLSSLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSP 539
SGTNAQVTYSLLPPQDPHLPL+SLVSINADNGHLFALRSLDYEALQ F+FRVGA+D GSP
Sbjct: 480 SGTNAQVTYSLLPPQDPHLPLTSLVSINADNGHLFALRSLDYEALQGFQFRVGASDHGSP 539
Query: 540 ALSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQN 599
ALSSEALVRV+VLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQN
Sbjct: 540 ALSSEALVRVVVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQN 599
Query: 600 AWLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLH 659
AWLSYQLLKATE GLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLH
Sbjct: 600 AWLSYQLLKATELGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLH 659
Query: 660 VLLVDGFSQPYLPLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRA 719
VLLVDGFSQPYLPLPEAAP QAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRA
Sbjct: 660 VLLVDGFSQPYLPLPEAAPTQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRA 719
Query: 720 ASVGRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQGA 779
ASVGRC VPEGP PG +VD+SGT TLSQSYQYEVCL GGSGTNEFKFLKPIIPNF Q
Sbjct: 720 ASVGRCLVPEGPLPGHLVDMSGTRTLSQSYQYEVCLAGGSGTNEFKFLKPIIPNFPPQCP 779
Query: 780 ERVSEANPSFRKSFEFS 796
+ + N +F +F F+
Sbjct: 780 GKEIQGNSTFPNNFGFN 796
>gi|11276081 protocadherin beta 8 precursor [Homo sapiens]
Length = 801
Score = 1201 bits (3106), Expect = 0.0
Identities = 598/797 (75%), Positives = 686/797 (86%), Gaps = 1/797 (0%)
Query: 1 MEAGGERFLRQRQVLLLFVFLGGSLAGS-ESRRYSVAEEKEKGFLIANLAKDLGLRVEEL 59
MEA G+ RQRQVL F+ LG SLAG+ E R YSV EE E + NLAKDLGL E
Sbjct: 1 MEASGKLICRQRQVLFSFLLLGLSLAGAAEPRSYSVVEETEGSSFVTNLAKDLGLEQREF 60
Query: 60 AARGAQVVSKGNKQHFQLSHQTGDLLLNEKLDREELCGPTEPCILHFQILLQNPLQFVTN 119
+ RG +VVS+GNK H QL+ +T DLLLNEKLDRE+LCG TEPC+L FQ+LL++P +F
Sbjct: 61 SRRGVRVVSRGNKLHLQLNQETADLLLNEKLDREDLCGHTEPCVLRFQVLLESPFEFFQA 120
Query: 120 ELRIIDVNDHSPVFFENEMHLKILESTLPGTVIPLGNAEDLDVGRNSLQNYTITPNSHFH 179
EL++ID+NDHSPVF + +M +K+ ES+ PGT PL NAEDLD+G+N+++NY I+PNS+F
Sbjct: 121 ELQVIDINDHSPVFLDKQMLVKVSESSPPGTAFPLKNAEDLDIGQNNIENYIISPNSYFR 180
Query: 180 VLTRSRRDGRKYPELVLDKALDREEQPELSLTLTALDGGSPPRSGTAQINIQVLDINDNA 239
VLTR R DGRKYPELVLD ALDREE+ EL LTLTALDGGSPPRSGTAQ+ I+V+D+NDNA
Sbjct: 181 VLTRKRSDGRKYPELVLDNALDREEEAELRLTLTALDGGSPPRSGTAQVYIEVVDVNDNA 240
Query: 240 PEFAQPLYEVAVLENTPVNSVIVTVSASDLDTGSFGTISYAFFHASEEIRKTFQLNPITG 299
PEF QP Y V + E++P++ ++V VSA+D+DTG G ISY+ F AS+EI KTF+++ +TG
Sbjct: 241 PEFQQPFYRVQISEDSPISFLVVKVSATDVDTGVNGEISYSLFQASDEISKTFKVDFLTG 300
Query: 300 DMQLVKYLNFEAINSYEVDIEAKDGGGLSGKSTVIVQVVDVNDNPPELTLSSVNSPIPEN 359
+++L K L+FE SYEV+IEA+D GG SGK TV++QV+DVND+ PE+T+S+ SPIPEN
Sbjct: 301 EIRLKKQLDFEKFQSYEVNIEARDAGGFSGKCTVLIQVIDVNDHAPEVTMSAFTSPIPEN 360
Query: 360 SGETVLAVFSVSDLDSGDNGRVMCSIENNLPFFLKPSVENFYTLVSEGALDRETRSEYNI 419
+ ETV+A+FSVSDLDSG+NG++ CSI+ +LPF LK SV NFYTL++E LDRE+R+EYN+
Sbjct: 361 APETVVALFSVSDLDSGENGKISCSIQEDLPFLLKSSVGNFYTLLTETPLDRESRAEYNV 420
Query: 420 TITITDLGTPRLKTKYNITVLVSDVNDNAPAFTQISYTLFVRENNSPALHIGSVSATDRD 479
TIT+TDLGTPRL T N+TVLVSDVNDNAPAFTQ SYTLFVRENNSPALHIGSVSATDRD
Sbjct: 421 TITVTDLGTPRLTTHLNMTVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRD 480
Query: 480 SGTNAQVTYSLLPPQDPHLPLSSLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSP 539
SGTNAQVTYSLLPPQDPHLPL+SLVSIN DNGHLFALRSLDYEALQAFEFRVGA+DRGSP
Sbjct: 481 SGTNAQVTYSLLPPQDPHLPLASLVSINTDNGHLFALRSLDYEALQAFEFRVGASDRGSP 540
Query: 540 ALSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQN 599
ALSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQN
Sbjct: 541 ALSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQN 600
Query: 600 AWLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLH 659
AWLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAK RLVVLVKDNGEPP SATATLH
Sbjct: 601 AWLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKQRLVVLVKDNGEPPCSATATLH 660
Query: 660 VLLVDGFSQPYLPLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRA 719
+LLVDGFSQPYLPLPEAAPAQ QAD LTVYLVVALASVSSLFLFSVLLFVAV LCRRSRA
Sbjct: 661 LLLVDGFSQPYLPLPEAAPAQGQADSLTVYLVVALASVSSLFLFSVLLFVAVLLCRRSRA 720
Query: 720 ASVGRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQGA 779
ASVGRCSVPEGPFPG +VDV GTG+LSQ+YQYEVCL GGSGTNEF+FLKP++PN
Sbjct: 721 ASVGRCSVPEGPFPGHLVDVRGTGSLSQNYQYEVCLAGGSGTNEFQFLKPVLPNIQGHSF 780
Query: 780 ERVSEANPSFRKSFEFS 796
E N +FR F FS
Sbjct: 781 GPEMEQNSNFRNGFGFS 797
>gi|9256616 protocadherin beta 4 precursor [Homo sapiens]
Length = 795
Score = 1198 bits (3099), Expect = 0.0
Identities = 601/785 (76%), Positives = 672/785 (85%)
Query: 12 RQVLLLFVFLGGSLAGSESRRYSVAEEKEKGFLIANLAKDLGLRVEELAARGAQVVSKGN 71
RQVL + + S E RYSV EE E G +A+LAKDLGL + ELA+R A+V+S +
Sbjct: 11 RQVLAFILMVFLSQVRLEPIRYSVLEETESGSFVAHLAKDLGLGIGELASRSARVLSDDD 70
Query: 72 KQHFQLSHQTGDLLLNEKLDREELCGPTEPCILHFQILLQNPLQFVTNELRIIDVNDHSP 131
KQ QL QTGDLLL EKLDREELCGP EPC+LHFQ+ L+ P+QF EL I D+NDHSP
Sbjct: 71 KQRLQLDRQTGDLLLREKLDREELCGPIEPCVLHFQVFLEMPVQFFQGELLIQDINDHSP 130
Query: 132 VFFENEMHLKILESTLPGTVIPLGNAEDLDVGRNSLQNYTITPNSHFHVLTRSRRDGRKY 191
+F E E+ LKILE++ PGT+ PL AEDLDVG N LQ YTI+PNSHFH+LTR+ +G+KY
Sbjct: 131 IFPEREVLLKILENSQPGTLFPLLIAEDLDVGSNGLQKYTISPNSHFHILTRNHSEGKKY 190
Query: 192 PELVLDKALDREEQPELSLTLTALDGGSPPRSGTAQINIQVLDINDNAPEFAQPLYEVAV 251
P+LV DK LDREEQPE SLTL ALDGGSPPRSGT + I ++DINDNAPEF Y V V
Sbjct: 191 PDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTPYGVQV 250
Query: 252 LENTPVNSVIVTVSASDLDTGSFGTISYAFFHASEEIRKTFQLNPITGDMQLVKYLNFEA 311
LEN+P++S IV V A D+D G+FG++SY F AS+EI++TF +N +TG++ L K L+FE
Sbjct: 251 LENSPLDSPIVRVLARDIDAGNFGSVSYGLFQASDEIKQTFSINEVTGEILLKKKLDFEK 310
Query: 312 INSYEVDIEAKDGGGLSGKSTVIVQVVDVNDNPPELTLSSVNSPIPENSGETVLAVFSVS 371
I SY V+IEA DGGGLSGK TV+++VVDVNDNPPEL +SS+ S IPEN+ ETV+++F +
Sbjct: 311 IKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPENAPETVVSIFRIR 370
Query: 372 DLDSGDNGRVMCSIENNLPFFLKPSVENFYTLVSEGALDRETRSEYNITITITDLGTPRL 431
D DSG+NG+++CSI +NLPF LKP+++NFYTLV+E LDRET +EYNITI +TDLGTPRL
Sbjct: 371 DRDSGENGKMICSIPDNLPFILKPTLKNFYTLVTERPLDRETSAEYNITIAVTDLGTPRL 430
Query: 432 KTKYNITVLVSDVNDNAPAFTQISYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLL 491
KT+ NITV VSDVNDNAPAFTQ SYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLL
Sbjct: 431 KTQQNITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLL 490
Query: 492 PPQDPHLPLSSLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSSEALVRVLV 551
PPQDPHLPL+SLVSINADNGHLFALRSLDYEALQAFEFRVGA+DRGSPALSSEALVRVLV
Sbjct: 491 PPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGASDRGSPALSSEALVRVLV 550
Query: 552 LDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE 611
LD NDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE
Sbjct: 551 LDTNDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATE 610
Query: 612 PGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYL 671
PGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYL
Sbjct: 611 PGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYL 670
Query: 672 PLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCSVPEGP 731
PLPEAAPAQAQAD LTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCSVPEGP
Sbjct: 671 PLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCSVPEGP 730
Query: 732 FPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQGAERVSEANPSFRK 791
FPG +VDVSGTGTLSQSYQYEVCLTG SGT EFKFLKPI PN + Q R + NP FR
Sbjct: 731 FPGHLVDVSGTGTLSQSYQYEVCLTGDSGTGEFKFLKPIFPNLLVQDTGREVKENPKFRN 790
Query: 792 SFEFS 796
S FS
Sbjct: 791 SLVFS 795
>gi|7661662 protocadherin beta 5 precursor [Homo sapiens]
Length = 795
Score = 1190 bits (3079), Expect = 0.0
Identities = 604/793 (76%), Positives = 685/793 (86%), Gaps = 1/793 (0%)
Query: 1 MEAGGERFLRQRQVLLLFVFLGGSLAGSESRRYSVAEEKEKGFLIANLAKDLGLRVEELA 60
ME + ++RQV+ L + L AGSE+ RYS+ EE E G+ +ANLAKDLGL V ELA
Sbjct: 1 METALAKTPQKRQVMFLAILLLLWEAGSEAVRYSIPEETESGYSVANLAKDLGLGVGELA 60
Query: 61 ARGAQVVSKGNKQHFQLSHQTGDLLLNEKLDREELCGPTEPCILHFQILLQNPLQFVTNE 120
RGA++ KGNK+ QL +TG+LLL EKLDRE +CG TEPCILHFQ+LL+NP+QF +
Sbjct: 61 TRGARMHYKGNKELLQLDIKTGNLLLYEKLDREVMCGATEPCILHFQLLLENPVQFFQTD 120
Query: 121 LRIIDVNDHSPVFFENEMHLKILESTLPGTVIPLGNAEDLDVGRNSLQNYTITPNSHFHV 180
L++ D+NDH+P F E EM LKI EST PGTV PL A+D D+G N++QNYTI+PNSHFHV
Sbjct: 121 LQLTDINDHAPEFPEKEMLLKIPESTQPGTVFPLKIAQDFDIGSNTVQNYTISPNSHFHV 180
Query: 181 LTRSRRDGRKYPELVLDKALDREEQPELSLTLTALDGGSPPRSGTAQINIQVLDINDNAP 240
T +R DGRKYPELVLDKALDREE+PELSLTLTALDGG+PPRSGT I I VLD NDNAP
Sbjct: 181 ATHNRGDGRKYPELVLDKALDREERPELSLTLTALDGGAPPRSGTTTIRIVVLDNNDNAP 240
Query: 241 EFAQPLYEVAVLENTPVNSVIVTVSASDLDTGSFGTISYAFFHASEEIRKTFQLNPITGD 300
EF Q YEV V EN+P+NS++V VSA DLD G++G+++YA F +E+ + F ++ T +
Sbjct: 241 EFLQSFYEVQVPENSPLNSLVVVVSARDLDAGAYGSVAYALFQG-DEVTQPFVIDEKTAE 299
Query: 301 MQLVKYLNFEAINSYEVDIEAKDGGGLSGKSTVIVQVVDVNDNPPELTLSSVNSPIPENS 360
++L + L+FEA Y V+I A DGGGLSGK TV ++VVDVNDN PELT+S+++SP PEN+
Sbjct: 300 IRLKRALDFEATPYYNVEIVATDGGGLSGKCTVAIEVVDVNDNAPELTMSTLSSPTPENA 359
Query: 361 GETVLAVFSVSDLDSGDNGRVMCSIENNLPFFLKPSVENFYTLVSEGALDRETRSEYNIT 420
ETV+AVFSVSD DSGDNGR++CSI+N+LPF LKP+++NFYTLV++ LDRE+++EYNIT
Sbjct: 360 PETVVAVFSVSDPDSGDNGRMICSIQNDLPFLLKPTLKNFYTLVTQRTLDRESQAEYNIT 419
Query: 421 ITITDLGTPRLKTKYNITVLVSDVNDNAPAFTQISYTLFVRENNSPALHIGSVSATDRDS 480
IT+TD+GTPRLKT++NITVLVSDVNDNAPAFTQ SYTLFVRENNSPALHIGSVSATDRDS
Sbjct: 420 ITVTDMGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDS 479
Query: 481 GTNAQVTYSLLPPQDPHLPLSSLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPA 540
GTNAQVTYSLLPPQ+PHL L+SLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPA
Sbjct: 480 GTNAQVTYSLLPPQNPHLRLASLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPA 539
Query: 541 LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA 600
LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA
Sbjct: 540 LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA 599
Query: 601 WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV 660
WLSYQLLKATEPGLF +WAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV
Sbjct: 600 WLSYQLLKATEPGLFSMWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV 659
Query: 661 LLVDGFSQPYLPLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA 720
LLVDGFSQPYLPLPEAAPAQAQAD LTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA
Sbjct: 660 LLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA 719
Query: 721 SVGRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQGAE 780
SVGRCSVPEGPFPG +VDVSGTGTLSQSY YEVCLTG SG EFKFLKPIIPN + QGA
Sbjct: 720 SVGRCSVPEGPFPGHLVDVSGTGTLSQSYHYEVCLTGDSGAGEFKFLKPIIPNLLPQGAG 779
Query: 781 RVSEANPSFRKSF 793
+FR SF
Sbjct: 780 EEIGKTAAFRNSF 792
>gi|9256604 protocadherin beta 11 precursor [Homo sapiens]
Length = 797
Score = 1179 bits (3050), Expect = 0.0
Identities = 599/796 (75%), Positives = 678/796 (85%)
Query: 1 MEAGGERFLRQRQVLLLFVFLGGSLAGSESRRYSVAEEKEKGFLIANLAKDLGLRVEELA 60
ME G R + RQVLLLFV LG S AGSE+ +SVAEE + G + NLAKDLGL+V EL+
Sbjct: 1 MENQGTRTQQIRQVLLLFVLLGMSQAGSETWSFSVAEEMQSGSFVGNLAKDLGLKVRELS 60
Query: 61 ARGAQVVSKGNKQHFQLSHQTGDLLLNEKLDREELCGPTEPCILHFQILLQNPLQFVTNE 120
+RGA+VVS KQ QL TGDLLL+E LDREELCG EPC+LH Q+L+QNP QF+ E
Sbjct: 61 SRGARVVSNDKKQRLQLDINTGDLLLSETLDREELCGSIEPCVLHLQVLMQNPTQFLQIE 120
Query: 121 LRIIDVNDHSPVFFENEMHLKILESTLPGTVIPLGNAEDLDVGRNSLQNYTITPNSHFHV 180
L++ D+NDHSP+F E +M L+I E++ G V L +A+DLDVG N++++YTI+PNSHFH+
Sbjct: 121 LQVRDINDHSPIFSEKQMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTISPNSHFHI 180
Query: 181 LTRSRRDGRKYPELVLDKALDREEQPELSLTLTALDGGSPPRSGTAQINIQVLDINDNAP 240
R D RKYPELVLDKALD EE PELS L+ALDGGSPPRSGTA + + V+DINDN+P
Sbjct: 181 KMRVIPDNRKYPELVLDKALDYEELPELSFILSALDGGSPPRSGTALVRVVVVDINDNSP 240
Query: 241 EFAQPLYEVAVLENTPVNSVIVTVSASDLDTGSFGTISYAFFHASEEIRKTFQLNPITGD 300
EF Q YEV + EN+ + S+I+ VSA DLD+G+ G I Y F HASE+IRKTF++N +G+
Sbjct: 241 EFEQAFYEVKIRENSILGSLILIVSAWDLDSGTNGEICYTFSHASEDIRKTFEINQKSGE 300
Query: 301 MQLVKYLNFEAINSYEVDIEAKDGGGLSGKSTVIVQVVDVNDNPPELTLSSVNSPIPENS 360
+ L L+FE I SY + I+A DGGGL GKSTVI+ V+DVNDN PE+T+SS+ SPIPEN+
Sbjct: 301 ITLRAPLDFETIESYSIIIQATDGGGLFGKSTVIIHVIDVNDNAPEITVSSITSPIPENT 360
Query: 361 GETVLAVFSVSDLDSGDNGRVMCSIENNLPFFLKPSVENFYTLVSEGALDRETRSEYNIT 420
ETV+ VFS+ D+DSGDNGR++CSI +LPF LK SVEN+YTL +E LDRE+ +EYNIT
Sbjct: 361 PETVVMVFSIQDIDSGDNGRIVCSIPEDLPFVLKSSVENYYTLETERPLDRESTAEYNIT 420
Query: 421 ITITDLGTPRLKTKYNITVLVSDVNDNAPAFTQISYTLFVRENNSPALHIGSVSATDRDS 480
IT+TDLG PRLKT++N TVLVSDVNDNAP FTQ SYTLFVRENNSPALHIGSVSATDRDS
Sbjct: 421 ITVTDLGIPRLKTEHNTTVLVSDVNDNAPTFTQTSYTLFVRENNSPALHIGSVSATDRDS 480
Query: 481 GTNAQVTYSLLPPQDPHLPLSSLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPA 540
GTNAQV YSLLPPQD HLPL+SLVSIN DNGHLFALRSLDYEALQAF+FRVGATDRGSPA
Sbjct: 481 GTNAQVNYSLLPPQDLHLPLASLVSINTDNGHLFALRSLDYEALQAFDFRVGATDRGSPA 540
Query: 541 LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA 600
LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA
Sbjct: 541 LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA 600
Query: 601 WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV 660
WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATL V
Sbjct: 601 WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLQV 660
Query: 661 LLVDGFSQPYLPLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA 720
LLVDGFSQPYLPLPEAAPAQAQAD LTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA
Sbjct: 661 LLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA 720
Query: 721 SVGRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQGAE 780
SVG CSVP+GPFPG +VDVSGTGTLSQSYQYEVCLTGGS TNEFKFLKP+IPN A+G
Sbjct: 721 SVGSCSVPKGPFPGHLVDVSGTGTLSQSYQYEVCLTGGSETNEFKFLKPVIPNIQAKGLG 780
Query: 781 RVSEANPSFRKSFEFS 796
+ SE N +FR SF F+
Sbjct: 781 KNSEENSTFRNSFGFN 796
>gi|9256606 protocadherin beta 12 precursor [Homo sapiens]
Length = 795
Score = 1172 bits (3032), Expect = 0.0
Identities = 594/795 (74%), Positives = 672/795 (84%)
Query: 1 MEAGGERFLRQRQVLLLFVFLGGSLAGSESRRYSVAEEKEKGFLIANLAKDLGLRVEELA 60
ME GG L+ RQVLL FV LG S AGSE+ + V EE + G + NLAK LGL V EL+
Sbjct: 1 MENGGAGTLQIRQVLLFFVLLGMSQAGSETGNFLVMEELQSGSFVGNLAKTLGLEVSELS 60
Query: 61 ARGAQVVSKGNKQHFQLSHQTGDLLLNEKLDREELCGPTEPCILHFQILLQNPLQFVTNE 120
+RGA+VVS NK+ QL TGDLLL E LDREELCG EPC+L+FQ+L++NP QF+ E
Sbjct: 61 SRGARVVSNDNKECLQLDTNTGDLLLREMLDREELCGSNEPCVLYFQVLMKNPTQFLQIE 120
Query: 121 LRIIDVNDHSPVFFENEMHLKILESTLPGTVIPLGNAEDLDVGRNSLQNYTITPNSHFHV 180
L++ D+NDHSPVF E EM L+I E++ G V L +A+DLDVG N++++YTI PNSHFHV
Sbjct: 121 LQVRDINDHSPVFLEKEMLLEIPENSPVGAVFLLESAKDLDVGINAVKSYTINPNSHFHV 180
Query: 181 LTRSRRDGRKYPELVLDKALDREEQPELSLTLTALDGGSPPRSGTAQINIQVLDINDNAP 240
R D RKYPELVLDKALD EE+PELS LTALDGGSPPRSGTA + + V+DINDN+P
Sbjct: 181 KIRVNPDNRKYPELVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNSP 240
Query: 241 EFAQPLYEVAVLENTPVNSVIVTVSASDLDTGSFGTISYAFFHASEEIRKTFQLNPITGD 300
EF Q YEV +LEN+ + S++VTVSA DLD+G+ +SY F HASE+IRKTF++N +GD
Sbjct: 241 EFEQAFYEVKILENSILGSLVVTVSAWDLDSGTNSELSYTFSHASEDIRKTFEINQKSGD 300
Query: 301 MQLVKYLNFEAINSYEVDIEAKDGGGLSGKSTVIVQVVDVNDNPPELTLSSVNSPIPENS 360
+ L L+FEAI SY + I+A DGGGL GKSTV +QV+DVNDN PE+T+SS+ SPIPEN+
Sbjct: 301 ITLTAPLDFEAIESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPENT 360
Query: 361 GETVLAVFSVSDLDSGDNGRVMCSIENNLPFFLKPSVENFYTLVSEGALDRETRSEYNIT 420
ETV+ VF + D DSGDNG+++CSI ++PF LK SV N+YTL +E LDRE+R+EYNIT
Sbjct: 361 PETVVMVFRIRDRDSGDNGKMVCSIPEDIPFVLKSSVNNYYTLETERPLDRESRAEYNIT 420
Query: 421 ITITDLGTPRLKTKYNITVLVSDVNDNAPAFTQISYTLFVRENNSPALHIGSVSATDRDS 480
IT+TDLGTPRLKT++NITVLVSDVNDNAPAFTQ SY LFVRENNSPALHIGS+SATDRDS
Sbjct: 421 ITVTDLGTPRLKTEHNITVLVSDVNDNAPAFTQTSYALFVRENNSPALHIGSISATDRDS 480
Query: 481 GTNAQVTYSLLPPQDPHLPLSSLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPA 540
GTNAQV YSLLP QDPHLPL+SLVSINADNGHLFALRSLDYEALQ F+FRVGATD GSPA
Sbjct: 481 GTNAQVNYSLLPSQDPHLPLASLVSINADNGHLFALRSLDYEALQGFQFRVGATDHGSPA 540
Query: 541 LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA 600
LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVP AAEPGYLVTKVVAVDGDSGQNA
Sbjct: 541 LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPWAAEPGYLVTKVVAVDGDSGQNA 600
Query: 601 WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV 660
WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV
Sbjct: 601 WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV 660
Query: 661 LLVDGFSQPYLPLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA 720
LLVDGFSQPYLPLPEAAPAQAQAD LTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA
Sbjct: 661 LLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA 720
Query: 721 SVGRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQGAE 780
VGRCSVPEGPFPG +VDVSGTGTLSQSY YEVC+TGGS +N+FKFLKPIIPNF+ Q
Sbjct: 721 PVGRCSVPEGPFPGHLVDVSGTGTLSQSYHYEVCVTGGSRSNKFKFLKPIIPNFLPQSTG 780
Query: 781 RVSEANPSFRKSFEF 795
E NP F+ + F
Sbjct: 781 SEVEENPPFQNNLGF 795
>gi|9256602 protocadherin beta 10 precursor [Homo sapiens]
Length = 800
Score = 1170 bits (3028), Expect = 0.0
Identities = 596/791 (75%), Positives = 668/791 (84%), Gaps = 2/791 (0%)
Query: 8 FLRQRQVLLLFVFLGGSLAGSESRRYSVAEEKEKGFLIANLAKDLGLRVEELAARGAQVV 67
F RQRQVL LF+F G SLAGS RYSV EE EKG + NLAKDLGL ELAARG +VV
Sbjct: 8 FPRQRQVLFLFLFWGVSLAGSGFGRYSVTEETEKGSFVVNLAKDLGLAEGELAARGTRVV 67
Query: 68 SKGNKQHFQLSHQTGDLLLNEKLDREELCGPTEPCILHFQILLQNPLQFVTNELRIIDVN 127
S NKQ+ L TG+LL NEKLDRE+LCGP EPC+L+FQIL+ +P Q ELR+ D+N
Sbjct: 68 SDDNKQYLLLDSHTGNLLTNEKLDREKLCGPKEPCMLYFQILMDDPFQIYRAELRVRDIN 127
Query: 128 DHSPVFFENEMHLKILESTLPGTVIPLGNAEDLDVGRNSLQNYTITPNSHFHVLTRSRRD 187
DH+PVF + E LKI E+T GT L A+D D G N +QNYTI+PNS FH+ +
Sbjct: 128 DHAPVFQDKETVLKISENTAEGTAFRLERAQDPDGGLNGIQNYTISPNSFFHINISGGDE 187
Query: 188 GRKYPELVLDKALDREEQPELSLTLTALDGGSPPRSGTAQINIQVLDINDNAPEFAQPLY 247
G YPELVLDKALDREEQ ELSLTLTALDGGSP RSGT+ + I VLD+NDNAP+FAQ LY
Sbjct: 188 GMIYPELVLDKALDREEQGELSLTLTALDGGSPSRSGTSTVRIVVLDVNDNAPQFAQALY 247
Query: 248 EVAVLENTPVNSVIVTVSASDLDTGSFGTISYAFFHASEEIRKTFQLNPITGDMQLVKYL 307
E EN+P+ +IV V A D+D+G +SY+FF ASE IR TFQ+NP +G++ L + L
Sbjct: 248 ETQAPENSPIGFLIVKVWAEDVDSGVNAEVSYSFFDASENIRTTFQINPFSGEIFLRELL 307
Query: 308 NFEAINSYEVDIEAKDGGGLSGKSTVIVQVVDVNDNPPELTLSSVNSPIPENSGETVLAV 367
++E +NSY+++I+A DGGGLS + V+V+V+D NDNPPEL +SS ++ + ENS ET LAV
Sbjct: 308 DYELVNSYKINIQAMDGGGLSARCRVLVEVLDTNDNPPELIVSSFSNSVAENSPETPLAV 367
Query: 368 FSVSDLDSGDNGRVMCSIENNLPFFLKPSVENFYTLVSEGALDRETRSEYNITITITDLG 427
F ++D DSG+NG+++C I+ NLPF LKPSVENFY L++EGALDRE R+EYNITIT+TDLG
Sbjct: 368 FKINDRDSGENGKMVCYIQENLPFLLKPSVENFYILITEGALDREIRAEYNITITVTDLG 427
Query: 428 TPRLKTKYNITVLVSDVNDNAPAFTQISYTLFVRENNSPALHIGSVSATDRDSGTNAQVT 487
TPRLKT++NITVLVSDVNDNAPAFTQ SYTLFVRENNSPALHIGSVSATDRDSGTNAQVT
Sbjct: 428 TPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVT 487
Query: 488 YSLLPPQDPHLPLSSLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSSEALV 547
YSLLPPQDPHLPL+SLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALS EALV
Sbjct: 488 YSLLPPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSREALV 547
Query: 548 RVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLL 607
RVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLL
Sbjct: 548 RVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLL 607
Query: 608 KATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFS 667
KATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLH+LLVDGFS
Sbjct: 608 KATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHLLLVDGFS 667
Query: 668 QPYLPLPEAAPAQAQ--ADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRC 725
QPYLPLPEAAPAQAQ ADLLTVYLVVALASVSSLFL SVLLFVAVRLCRRSRAASVGRC
Sbjct: 668 QPYLPLPEAAPAQAQAEADLLTVYLVVALASVSSLFLLSVLLFVAVRLCRRSRAASVGRC 727
Query: 726 SVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQGAERVSEA 785
SVPEGPFPG +VDV G TLSQSYQYEVCLTGG GT+EFKFLKP+I + AQG R E
Sbjct: 728 SVPEGPFPGHLVDVRGAETLSQSYQYEVCLTGGPGTSEFKFLKPVISDIQAQGPGRKGEE 787
Query: 786 NPSFRKSFEFS 796
N +FR SF F+
Sbjct: 788 NSTFRNSFGFN 798
>gi|14195616 protocadherin beta 9 precursor [Homo sapiens]
Length = 797
Score = 1169 bits (3024), Expect = 0.0
Identities = 594/796 (74%), Positives = 670/796 (84%)
Query: 1 MEAGGERFLRQRQVLLLFVFLGGSLAGSESRRYSVAEEKEKGFLIANLAKDLGLRVEELA 60
M+ G F RQRQVL LF+F G SLAGS RYSV EE EKG + NLAKDLGL ELA
Sbjct: 1 MKTRGFSFPRQRQVLFLFLFWGVSLAGSGFGRYSVTEETEKGSFVVNLAKDLGLAEGELA 60
Query: 61 ARGAQVVSKGNKQHFQLSHQTGDLLLNEKLDREELCGPTEPCILHFQILLQNPLQFVTNE 120
ARG +VVS NKQ+ L TG+LL NEKLDRE+LCGP EPC+L+FQIL+ +P Q E
Sbjct: 61 ARGTRVVSDDNKQYLLLDSHTGNLLTNEKLDREKLCGPKEPCMLYFQILMDDPFQIYRAE 120
Query: 121 LRIIDVNDHSPVFFENEMHLKILESTLPGTVIPLGNAEDLDVGRNSLQNYTITPNSHFHV 180
LR+ D+NDHSPVF EM LKI E+T GT L A+D D G NS+QNYTI+ NS FH+
Sbjct: 121 LRVRDINDHSPVFRHKEMVLKISENTAEGTAFRLERAQDPDEGHNSIQNYTISSNSFFHI 180
Query: 181 LTRSRRDGRKYPELVLDKALDREEQPELSLTLTALDGGSPPRSGTAQINIQVLDINDNAP 240
+G YPELVLDKALDREEQ ELSLTLTALDGGSP RSGT+ I I VLD+NDNAP
Sbjct: 181 KISGSDEGMIYPELVLDKALDREEQEELSLTLTALDGGSPSRSGTSTIRIVVLDVNDNAP 240
Query: 241 EFAQPLYEVAVLENTPVNSVIVTVSASDLDTGSFGTISYAFFHASEEIRKTFQLNPITGD 300
+FAQ LYE EN+PV S+IV VSA D D+G +SY+FF ASE+I TFQ+NP +G+
Sbjct: 241 QFAQALYETQAPENSPVGSLIVKVSAGDADSGVNAEVSYSFFDASEDILTTFQINPFSGE 300
Query: 301 MQLVKYLNFEAINSYEVDIEAKDGGGLSGKSTVIVQVVDVNDNPPELTLSSVNSPIPENS 360
+ L + L++E +NSY+++I+A DGGGLS + TV+++V+D NDNPPEL +SS+++ + ENS
Sbjct: 301 IFLRELLDYELVNSYKINIQAMDGGGLSARCTVLIKVLDSNDNPPELIISSLSNSVAENS 360
Query: 361 GETVLAVFSVSDLDSGDNGRVMCSIENNLPFFLKPSVENFYTLVSEGALDRETRSEYNIT 420
VLAVF + D DSG+NG+ +C +++NLPFFLKPSV+NFY L++EGALDRE+++EYNIT
Sbjct: 361 PGIVLAVFKIKDRDSGENGKTICYVQDNLPFFLKPSVDNFYILMTEGALDRESKAEYNIT 420
Query: 421 ITITDLGTPRLKTKYNITVLVSDVNDNAPAFTQISYTLFVRENNSPALHIGSVSATDRDS 480
IT+TDLGTPRLKT+++IT+ VSDVNDNAPAFTQ SYTLFVRENNSPALHIGSVSATDRDS
Sbjct: 421 ITVTDLGTPRLKTEHSITLQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDS 480
Query: 481 GTNAQVTYSLLPPQDPHLPLSSLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPA 540
GTNAQVTYSLLPPQDPHLPL+SLVSINADNGHLFALRSLDYEALQAF+FRVGA+DRGSPA
Sbjct: 481 GTNAQVTYSLLPPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFDFRVGASDRGSPA 540
Query: 541 LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA 600
LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA
Sbjct: 541 LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA 600
Query: 601 WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV 660
WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV
Sbjct: 601 WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV 660
Query: 661 LLVDGFSQPYLPLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA 720
LLVDGFSQPYLPLPEAAPAQAQADLLTVYLVVALASVSSLFL SVLLFVAVRLCRRSRAA
Sbjct: 661 LLVDGFSQPYLPLPEAAPAQAQADLLTVYLVVALASVSSLFLLSVLLFVAVRLCRRSRAA 720
Query: 721 SVGRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQGAE 780
SVGRCSVPEGPFPG +VDVSGTGTL QSYQYEVCLTGGS T EFKFLKPI P+
Sbjct: 721 SVGRCSVPEGPFPGHLVDVSGTGTLFQSYQYEVCLTGGSETGEFKFLKPITPHLPPHRGG 780
Query: 781 RVSEANPSFRKSFEFS 796
+ E N + SF F+
Sbjct: 781 KEIEENSTLPNSFGFN 796
>gi|11036656 protocadherin beta 7 precursor [Homo sapiens]
Length = 793
Score = 1161 bits (3004), Expect = 0.0
Identities = 597/795 (75%), Positives = 667/795 (83%), Gaps = 2/795 (0%)
Query: 1 MEAGGERFLRQRQVLLLFVFLGGSLAGSESRRYSVAEEKEKGFLIANLAKDLGLRVEELA 60
MEA ER +++RQVL L VFLG S AG+E RY VAEE E+G + NLAKDLGL V EL
Sbjct: 1 MEARVERAVQKRQVLFLCVFLGMSWAGAEPLRYFVAEETERGTFLTNLAKDLGLGVGELR 60
Query: 61 ARGAQVVSKGNKQHFQLSHQTGDLLLNEKLDREELCGPTEPCILHFQILLQNPLQFVTNE 120
ARG ++VS N Q LS TGDLLLNEKLDREELCGP EPC+L FQ+LL+ P Q E
Sbjct: 61 ARGTRIVSDQNMQILLLSSLTGDLLLNEKLDREELCGPREPCVLPFQLLLEKPFQIFRAE 120
Query: 121 LRIIDVNDHSPVFFENEMHLKILESTLPGTVIPLGNAEDLDVGRNSLQNYTITPNSHFHV 180
L + D+NDH+PVF + E+ LKILEST PG L +A+D DVG NSL NYTI+PN++FH+
Sbjct: 121 LWVRDINDHAPVFLDREISLKILESTTPGAAFLLESAQDSDVGTNSLSNYTISPNAYFHI 180
Query: 181 LTRSRRDGRKYPELVLDKALDREEQPELSLTLTALDGGSPPRSGTAQINIQVLDINDNAP 240
+G YPELVL++ LDREE PE SLTLTALDGGSPPRSGTA + I VLD+NDNAP
Sbjct: 181 NVHDSGEGNIYPELVLNQVLDREEIPEFSLTLTALDGGSPPRSGTALVRILVLDVNDNAP 240
Query: 241 EFAQPLYEVAVLENTPVNSVIVTVSASDLDTGSFGTISYAFFHASEEIRKTFQLNPITGD 300
+F + LY+V V EN+PV S++V+VSA DLDTGS G I+YAF +A+E I KTFQ+NP +G
Sbjct: 241 DFVRSLYKVQVPENSPVGSMVVSVSARDLDTGSNGEIAYAFSYATERILKTFQINPTSGS 300
Query: 301 MQLVKYLNFEAINSYEVDIEAKDGGGLSGKSTVIVQVVDVNDNPPELTLSSVNSPIPENS 360
+ L L++EAI +Y + I+AKDGGGLSGK TV+V V D+NDN PEL LSS+ SPI ENS
Sbjct: 301 LHLKAQLDYEAIQTYTLTIQAKDGGGLSGKCTVVVDVTDINDNRPELLLSSLTSPIAENS 360
Query: 361 GETVLAVFSVSDLDSGDNGRVMCSIENNLPFFLKPSVENFYTLVSEGALDRETRSEYNIT 420
ETV+AVF + D DSG+NG+ +CSI++++PF LKPSVENFYTLV+E LDRE +EYNIT
Sbjct: 361 PETVVAVFRIRDRDSGNNGKTVCSIQDDVPFILKPSVENFYTLVTEKPLDRERNTEYNIT 420
Query: 421 ITITDLGTPRLKTKYNITVLVSDVNDNAPAFTQISYTLFVRENNSPALHIGSVSATDRDS 480
IT+TDLGTPRLKT++NITVLVSDVNDNAPAFTQ SYTLFVRENNSPAL IGSVSATDRDS
Sbjct: 421 ITVTDLGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALPIGSVSATDRDS 480
Query: 481 GTNAQVTYSLLPPQDPHLPLSSLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPA 540
GTNAQV YSLLP QDPHLPL+SLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPA
Sbjct: 481 GTNAQVIYSLLPSQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPA 540
Query: 541 LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA 600
LSSEALVRVLVLDANDNSPFVLYPLQN SAPCTE +PRAAEPGYLVTKVVAVDGDSGQNA
Sbjct: 541 LSSEALVRVLVLDANDNSPFVLYPLQNSSAPCTEPLPRAAEPGYLVTKVVAVDGDSGQNA 600
Query: 601 WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV 660
WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAK RLVVLVKDNGEPPRSATATLHV
Sbjct: 601 WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKQRLVVLVKDNGEPPRSATATLHV 660
Query: 661 LLVDGFSQPYLPLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAA 720
LLVDGFSQPYL LPEAAP QA + LTVYLVVALASVSSLFL SVLLFVAVRLCRRSRAA
Sbjct: 661 LLVDGFSQPYLRLPEAAPDQANS--LTVYLVVALASVSSLFLLSVLLFVAVRLCRRSRAA 718
Query: 721 SVGRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQGAE 780
VGRCSVPEGPFP +VD+SGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPN + Q
Sbjct: 719 PVGRCSVPEGPFPRHLVDLSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNLLPQSTG 778
Query: 781 RVSEANPSFRKSFEF 795
R E N F+ + F
Sbjct: 779 REVEENRPFQNNLGF 793
>gi|14195607 protocadherin beta 1 precursor [Homo sapiens]
Length = 818
Score = 788 bits (2036), Expect = 0.0
Identities = 404/770 (52%), Positives = 548/770 (71%), Gaps = 4/770 (0%)
Query: 9 LRQRQVLLLFVFLGGSLAGSESRRYSVAEEKEKGFLIANLAKDLGLRVEELAARGAQVVS 68
L+ RQV L +FL S+ + + RYSVAEE E G +AN+AKDLGL V +LAARGA++VS
Sbjct: 9 LQNRQVGSLLIFLCISVGDATTIRYSVAEEMESGSFVANVAKDLGLEVGKLAARGARLVS 68
Query: 69 KGNKQHFQLSHQTGDLLLNEKLDREELCGPTEPCILHFQILLQNPLQFVTNELRIIDVND 128
+GNK HF+L +TGDL + EKLDRE LCG +PC+LHF+++L PLQ E+R+ D+ND
Sbjct: 69 EGNKMHFRLHRKTGDLFVKEKLDRESLCGKADPCVLHFEVVLVEPLQSFRAEVRVFDIND 128
Query: 129 HSPVFFENEMHLKILESTLPGTVIPLGNAEDLDVGRNSLQNYTITPNSHFHVLTRSRRDG 188
++PVF E LKI EST G+ PL +A+DLDVG N LQNYT++ N +FH+ TR G
Sbjct: 129 NAPVFLNKEPLLKIPESTPLGSRFPLQSAQDLDVGLNGLQNYTLSANGYFHLHTRFCSHG 188
Query: 189 RKYPELVLDKALDREEQPELSLTLTALDGGSPPRSGTAQINIQVLDINDNAPEFAQPLYE 248
KY ELVL+K LDREEQPE++LT+TA+DGGSPP+SGTA I++ VLD+ND+ P+F++ +Y
Sbjct: 189 PKYAELVLNKPLDREEQPEVNLTITAVDGGSPPKSGTAHIHVVVLDVNDHVPQFSRLVYR 248
Query: 249 VAVLENTPVNSVIVTVSASDLDTGSFGTISYAFFHASEEIRKTFQLNPITGDMQLVKYLN 308
V EN+P S++ TV+A DLD G+ I+Y+ E I KTFQ++P G+++L L+
Sbjct: 249 AQVSENSPNGSLVATVTAVDLDEGTNKAITYSLAQNPEAILKTFQIDPQNGEVRLRGPLD 308
Query: 309 FEAINSYEVDIEAKDGGGLSGKSTVIVQVVDVNDNPPELTLSSVNSPIPENS-GETVLAV 367
FEAI +Y++DI+A DGGGLS S V+V+VVDVNDNPPE+ +SSV+SP+PE+S +TV+A+
Sbjct: 309 FEAIETYDIDIQATDGGGLSAHSKVLVEVVDVNDNPPEVMVSSVSSPLPEDSPPQTVVAL 368
Query: 368 FSVSDLDSGDNGRVMCSIENNLPFFLKPSVENFYTLVSEGALDRETRSEYNITITITDLG 427
F++ D D G+V C + +LPF +KP+ N Y+LV++ +LDRE S YNITI D G
Sbjct: 369 FTIRDRDIRVGGKVTCFLREDLPFVIKPTFGNSYSLVTDRSLDREEVSGYNITIVAMDTG 428
Query: 428 TPRLKTKYNITVLVSDVNDNAPAFTQISYTLFVRENNSPALHIGSVSATDRDSGTNAQVT 487
P L + I VL+SDVNDN P F + SY L VRENNSPA+ IG V A D D G NAQ+T
Sbjct: 429 PPSLSAETMIEVLISDVNDNPPIFREDSYILTVRENNSPAVFIGKVHAEDLDLGENAQIT 488
Query: 488 YSLLPPQDPHLPLSSLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSSEALV 547
YSLLPP++ L + + +SIN+ NG L+ALR++DYEA+Q F+F V ATD G +LSS+ V
Sbjct: 489 YSLLPPKNGDLSVFAYISINSGNGKLYALRTMDYEAIQDFQFVVKATDGGFLSLSSQVTV 548
Query: 548 RVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLL 607
RV+VLD NDN P +LYPLQNG+ PC +LVPR+AE GYLVTKVVAVDGDSGQN+WLSY LL
Sbjct: 549 RVVVLDDNDNRPMILYPLQNGTLPCNDLVPRSAEAGYLVTKVVAVDGDSGQNSWLSYHLL 608
Query: 608 KATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFS 667
KAT+ GLF V NGE+ T R +SERD +L++LV+D+G+P S T +L++LLVDGFS
Sbjct: 609 KATDLGLFSVQRQNGEIHTLRQISERDPMMQKLIILVQDHGQPALSTTVSLNILLVDGFS 668
Query: 668 QPYLPLPEAAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSR---AASVGR 724
+PYL + + + T YLV++L +S LFL SV++ + + ++ + ++
Sbjct: 669 EPYLQFQDPTKHSRKVNPSTKYLVISLVILSFLFLLSVIVIFIIHVYQKIKYREKFTIQE 728
Query: 725 CSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNF 774
+ F +V G G+LS+ YE+C G+G +EF+FLK +PNF
Sbjct: 729 HFYDDCNFSNNLVQGQGNGSLSRPCPYEMCSATGTGNSEFRFLKRFMPNF 778
>gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 647 bits (1669), Expect = 0.0
Identities = 365/794 (45%), Positives = 504/794 (63%), Gaps = 17/794 (2%)
Query: 12 RQVLLLFVFLGGSLAGSESR-RYSVAEEKEKGFLIANLAKDLGLRVEELAARGAQVVSKG 70
R LL + LG R YSV+EE +KG + ++AKDLGL ELA RG +++S+G
Sbjct: 11 RGFFLLSILLGTPWEAWAGRILYSVSEETDKGSFVGDIAKDLGLEPRELAERGVRIISRG 70
Query: 71 NKQHFQLSHQTGDLLLNEKLDREELCGPTEPCILHFQILLQNPLQFVTNELRIIDVNDHS 130
Q F L+ ++G L+ ++DREE+C + C+++F IL+++ + ++ IID+ND+
Sbjct: 71 RTQLFALNQRSGSLVTAGRIDREEICAQSARCLVNFNILMEDKMNLYPIDVEIIDINDNV 130
Query: 131 PVFFENEMHLKILESTLPGTVIPLGNAEDLDVGRNSLQNYTITPNSHFHVLTRSRRDGRK 190
P F E+++KI+E+T PG PL A D DVG NSLQ+Y ++PN HF + +S D K
Sbjct: 131 PRFLTEEINVKIMENTAPGVRFPLSEAGDPDVGTNSLQSYQLSPNRHFSLAVQSGDDETK 190
Query: 191 YPELVLDKALDREEQPELSLTLTALDGGSPPRSGTAQINIQVLDINDNAPEFAQPLYEVA 250
YPELVL++ LDREE+ L LTA DGG PPRS TA I + V+D+ND+ P F+ P Y+V
Sbjct: 191 YPELVLERVLDREEERVHHLVLTASDGGDPPRSSTAHIQVTVVDVNDHTPVFSLPQYQVT 250
Query: 251 VLENTPVNSVIVTVSASDLDTGSFGTISYAFFHASEEIRKTFQLNPITGDMQLVKYLNFE 310
V EN PV + ++TV A DLD G G ++Y+F + ++ K F LN +TG++ ++ L++E
Sbjct: 251 VPENVPVGTRLLTVHAIDLDEGVNGEVTYSFRKITPKLPKMFHLNSLTGEISTLEGLDYE 310
Query: 311 AINSYEVDIEAKDGGGLSGKSTVIVQVVDVNDNPPELTLSSVNSPIPENSG-ETVLAVFS 369
YE++++A+DG G K+ V++ V+DVNDN PE+T++S++S IPE++ TV+A+F
Sbjct: 311 ETAFYEMEVQAQDGPGSLTKAKVLITVLDVNDNAPEVTMTSLSSSIPEDTPLGTVIALFY 370
Query: 370 VSDLDSGDNGRVMCSIENNLPFFLKPSVENFYTLVSEGALDRETRSEYNITITITDLGTP 429
+ D DSG NG V C+I NLPF L+ S++N+Y LV+ LDRET S YNIT+ TD GTP
Sbjct: 371 LQDRDSGKNGEVTCTIPENLPFKLEKSIDNYYRLVTTKNLDRETLSLYNITLKATDGGTP 430
Query: 430 RLKTKYNITVLVSDVNDNAPAFTQISYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYS 489
L + +I + V+D NDN P F SY++++ ENN I V+A D DS NAQ+TYS
Sbjct: 431 PLSRETHIFMQVADTNDNPPTFPHSSYSVYIAENNPRGASIFLVTAQDHDSEDNAQITYS 490
Query: 490 LLPPQDPHLPLSSLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSSEALVRV 549
L P+SS VSIN+D G L+AL+S DYE L+ + RV A D G P LSS + +
Sbjct: 491 LAEDTIQGAPVSSYVSINSDTGVLYALQSFDYEQLRELQLRVTAHDSGDPPLSSNMSLSL 550
Query: 550 LVLDANDNSPFVLYP-LQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLK 608
VLD NDN P +LYP L + EL PR+AEPGYLVTKVVAVD DSGQNAWLSY LLK
Sbjct: 551 FVLDQNDNPPEILYPALPTDGSTGMELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYLLLK 610
Query: 609 ATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQ 668
A+EPGLF V + GEVRTAR L +RDA K LVV V+D+G+PP SAT TL V + D +
Sbjct: 611 ASEPGLFAVGLYTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPE 670
Query: 669 PYLPLPEAAPAQAQADL-LTVYLVVALASVSSLFLFSVLLFVAVRLCR--RSR---AASV 722
L P+ + LT+YLVVA+A+VS +FL VL+ +A+RL R +SR A+
Sbjct: 671 VLADLGSLEPSDGPYNYDLTLYLVVAVATVSCVFLAFVLVLLALRLRRWHKSRLLQASEG 730
Query: 723 GRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQGAERV 782
G +VP F G + G Q+Y +EV LT S + F + PN+V +
Sbjct: 731 GLANVPTSHFVG----MDGVQAFLQTYSHEVSLTADSRKSHLIFPQ---PNYVDMLISQE 783
Query: 783 S-EANPSFRKSFEF 795
S E N S S +F
Sbjct: 784 SCEKNDSLLTSVDF 797
>gi|14196477 protocadherin gamma subfamily A, 7 isoform 2 precursor
[Homo sapiens]
Length = 817
Score = 647 bits (1669), Expect = 0.0
Identities = 365/794 (45%), Positives = 504/794 (63%), Gaps = 17/794 (2%)
Query: 12 RQVLLLFVFLGGSLAGSESR-RYSVAEEKEKGFLIANLAKDLGLRVEELAARGAQVVSKG 70
R LL + LG R YSV+EE +KG + ++AKDLGL ELA RG +++S+G
Sbjct: 11 RGFFLLSILLGTPWEAWAGRILYSVSEETDKGSFVGDIAKDLGLEPRELAERGVRIISRG 70
Query: 71 NKQHFQLSHQTGDLLLNEKLDREELCGPTEPCILHFQILLQNPLQFVTNELRIIDVNDHS 130
Q F L+ ++G L+ ++DREE+C + C+++F IL+++ + ++ IID+ND+
Sbjct: 71 RTQLFALNQRSGSLVTAGRIDREEICAQSARCLVNFNILMEDKMNLYPIDVEIIDINDNV 130
Query: 131 PVFFENEMHLKILESTLPGTVIPLGNAEDLDVGRNSLQNYTITPNSHFHVLTRSRRDGRK 190
P F E+++KI+E+T PG PL A D DVG NSLQ+Y ++PN HF + +S D K
Sbjct: 131 PRFLTEEINVKIMENTAPGVRFPLSEAGDPDVGTNSLQSYQLSPNRHFSLAVQSGDDETK 190
Query: 191 YPELVLDKALDREEQPELSLTLTALDGGSPPRSGTAQINIQVLDINDNAPEFAQPLYEVA 250
YPELVL++ LDREE+ L LTA DGG PPRS TA I + V+D+ND+ P F+ P Y+V
Sbjct: 191 YPELVLERVLDREEERVHHLVLTASDGGDPPRSSTAHIQVTVVDVNDHTPVFSLPQYQVT 250
Query: 251 VLENTPVNSVIVTVSASDLDTGSFGTISYAFFHASEEIRKTFQLNPITGDMQLVKYLNFE 310
V EN PV + ++TV A DLD G G ++Y+F + ++ K F LN +TG++ ++ L++E
Sbjct: 251 VPENVPVGTRLLTVHAIDLDEGVNGEVTYSFRKITPKLPKMFHLNSLTGEISTLEGLDYE 310
Query: 311 AINSYEVDIEAKDGGGLSGKSTVIVQVVDVNDNPPELTLSSVNSPIPENSG-ETVLAVFS 369
YE++++A+DG G K+ V++ V+DVNDN PE+T++S++S IPE++ TV+A+F
Sbjct: 311 ETAFYEMEVQAQDGPGSLTKAKVLITVLDVNDNAPEVTMTSLSSSIPEDTPLGTVIALFY 370
Query: 370 VSDLDSGDNGRVMCSIENNLPFFLKPSVENFYTLVSEGALDRETRSEYNITITITDLGTP 429
+ D DSG NG V C+I NLPF L+ S++N+Y LV+ LDRET S YNIT+ TD GTP
Sbjct: 371 LQDRDSGKNGEVTCTIPENLPFKLEKSIDNYYRLVTTKNLDRETLSLYNITLKATDGGTP 430
Query: 430 RLKTKYNITVLVSDVNDNAPAFTQISYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYS 489
L + +I + V+D NDN P F SY++++ ENN I V+A D DS NAQ+TYS
Sbjct: 431 PLSRETHIFMQVADTNDNPPTFPHSSYSVYIAENNPRGASIFLVTAQDHDSEDNAQITYS 490
Query: 490 LLPPQDPHLPLSSLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSSEALVRV 549
L P+SS VSIN+D G L+AL+S DYE L+ + RV A D G P LSS + +
Sbjct: 491 LAEDTIQGAPVSSYVSINSDTGVLYALQSFDYEQLRELQLRVTAHDSGDPPLSSNMSLSL 550
Query: 550 LVLDANDNSPFVLYP-LQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLK 608
VLD NDN P +LYP L + EL PR+AEPGYLVTKVVAVD DSGQNAWLSY LLK
Sbjct: 551 FVLDQNDNPPEILYPALPTDGSTGMELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYLLLK 610
Query: 609 ATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQ 668
A+EPGLF V + GEVRTAR L +RDA K LVV V+D+G+PP SAT TL V + D +
Sbjct: 611 ASEPGLFAVGLYTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPE 670
Query: 669 PYLPLPEAAPAQAQADL-LTVYLVVALASVSSLFLFSVLLFVAVRLCR--RSR---AASV 722
L P+ + LT+YLVVA+A+VS +FL VL+ +A+RL R +SR A+
Sbjct: 671 VLADLGSLEPSDGPYNYDLTLYLVVAVATVSCVFLAFVLVLLALRLRRWHKSRLLQASEG 730
Query: 723 GRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPIIPNFVAQGAERV 782
G +VP F G + G Q+Y +EV LT S + F + PN+V +
Sbjct: 731 GLANVPTSHFVG----MDGVQAFLQTYSHEVSLTADSRKSHLIFPQ---PNYVDMLISQE 783
Query: 783 S-EANPSFRKSFEF 795
S E N S S +F
Sbjct: 784 SCEKNDSLLTSVDF 797
>gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 645 bits (1663), Expect = 0.0
Identities = 362/769 (47%), Positives = 493/769 (64%), Gaps = 12/769 (1%)
Query: 9 LRQRQVLLLFVFLGGSLAGSESRRYSVAEEKEKGFLIANLAKDLGLRVEELAARGAQVVS 68
LR R VLL + A + RYSV EE EKG+++ N++KDL L ELA R ++VS
Sbjct: 9 LRGRLVLLCSLLGMLWEARASQIRYSVPEETEKGYIVGNISKDLALEPRELAERRVRIVS 68
Query: 69 KGNKQHFQLSHQTGDLLLNEKLDREELCGPTEPCILHFQILLQNPLQFVTNELRIIDVND 128
+G Q F L+ ++G L+ ++DREELC + C+++F++L+++ ++ E+ + D+ND
Sbjct: 69 RGRTQLFSLNPRSGTLVTAGRIDREELCAQSPRCLVNFKVLVEDRVKLYGIEIEVTDIND 128
Query: 129 HSPVFFENEMHLKILESTLPGTVIPLGNAEDLDVGRNSLQNYTITPNSHFHVLTRSRRDG 188
+P F + +KI E +PG PL A D DVG NSLQ+Y ++PN HF + ++ +G
Sbjct: 129 SAPKFQAESLEVKINEIAVPGARYPLPEAIDPDVGVNSLQSYQLSPNHHFSLNVQTGDNG 188
Query: 189 RKYPELVLDKALDREEQPELSLTLTALDGGSPPRSGTAQINIQVLDINDNAPEFAQPLYE 248
PELVL++ALDREE L LTA DGG P RS T +I++ VLD NDNAP FAQ +Y
Sbjct: 189 AINPELVLERALDREEATAHHLVLTASDGGEPRRSSTVRIHVTVLDTNDNAPVFAQRIYR 248
Query: 249 VAVLENTPVNSVIVTVSASDLDTGSFGTISYAFFHASEEIRKTFQLNPITGDMQLVKYLN 308
V VLEN P + ++T +ASDLD G G ++Y F+ +E+ FQLN TG++ K L+
Sbjct: 249 VKVLENVPPGTWLLTATASDLDEGINGKVAYKFWKINEKQSLLFQLNENTGEISTAKSLD 308
Query: 309 FEAINSYEVDIEAKDGGGLSGKSTVIVQVVDVNDNPPELTLSSVNSPIPENSGE-TVLAV 367
+E + YE++I+A+DGGGL G + V++ V DVNDN PE+T++S+ SP+ E++ + TV+ +
Sbjct: 309 YEECSFYEMEIQAEDGGGLKGWTKVLISVEDVNDNRPEVTITSLFSPVREDAPQGTVILL 368
Query: 368 FSVSDLDSGDNGRVMCSIENNLPFFLKPSVENFYTLVSEGALDRETRSEYNITITITDLG 427
F+ D DSG NG+V+CSI+ NL F L+ S E++Y L++ LDRE SEYNIT+T TD G
Sbjct: 369 FNAHDRDSGKNGQVVCSIQENLSFTLENSEEDYYRLLTAQILDREKASEYNITVTATDRG 428
Query: 428 TPRLKTKYNITVLVSDVNDNAPAFTQISYTLFVRENNSPALHIGSVSATDRDSGTNAQVT 487
TP L T+ +IT+ V+D+NDN PAF+Q SY++++ ENN+ I SV A D DS N++V
Sbjct: 429 TPPLSTEIHITLQVTDINDNPPAFSQASYSVYLPENNARGTSIFSVIAYDPDSNENSRVI 488
Query: 488 YSLLPPQDPHLPLSSLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSSEALV 547
YSL PLS+ VSIN+D G L+AL S DYE + + +V A+D GSP LSS +
Sbjct: 489 YSLAEDTIQGSPLSTYVSINSDTGVLYALCSFDYEQFRDLQMQVTASDSGSPPLSSNVSL 548
Query: 548 RVLVLDANDNSPFVLYP-LQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQL 606
R+ VLD NDN+P +LYP L + EL PR+AEPGYLVTKVVAVD DSGQNAWLSY+L
Sbjct: 549 RLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRL 608
Query: 607 LKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGF 666
KA+EPGLF V H GEVRTAR L +RDA K LVV V+D+G+PP SAT TL V + D
Sbjct: 609 FKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAIADSI 668
Query: 667 SQPYLPLPE-AAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRL-----CRRSRAA 720
L PA +A LT+YLVVA+A VS +FL V+ +A+RL RA
Sbjct: 669 PDILADLGSLQIPADLEASDLTLYLVVAVAVVSCVFLTFVITLLALRLRHWHSSHLLRAT 728
Query: 721 SVGRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKP 769
S G VP F G V G Q+Y E LT S + F +P
Sbjct: 729 SDGLAGVPTSHFVG----VDGVRAFLQTYSQEFSLTADSRKSHLIFPQP 773
>gi|14270487 protocadherin gamma subfamily A, 9 isoform 2 precursor
[Homo sapiens]
Length = 828
Score = 645 bits (1663), Expect = 0.0
Identities = 362/769 (47%), Positives = 493/769 (64%), Gaps = 12/769 (1%)
Query: 9 LRQRQVLLLFVFLGGSLAGSESRRYSVAEEKEKGFLIANLAKDLGLRVEELAARGAQVVS 68
LR R VLL + A + RYSV EE EKG+++ N++KDL L ELA R ++VS
Sbjct: 9 LRGRLVLLCSLLGMLWEARASQIRYSVPEETEKGYIVGNISKDLALEPRELAERRVRIVS 68
Query: 69 KGNKQHFQLSHQTGDLLLNEKLDREELCGPTEPCILHFQILLQNPLQFVTNELRIIDVND 128
+G Q F L+ ++G L+ ++DREELC + C+++F++L+++ ++ E+ + D+ND
Sbjct: 69 RGRTQLFSLNPRSGTLVTAGRIDREELCAQSPRCLVNFKVLVEDRVKLYGIEIEVTDIND 128
Query: 129 HSPVFFENEMHLKILESTLPGTVIPLGNAEDLDVGRNSLQNYTITPNSHFHVLTRSRRDG 188
+P F + +KI E +PG PL A D DVG NSLQ+Y ++PN HF + ++ +G
Sbjct: 129 SAPKFQAESLEVKINEIAVPGARYPLPEAIDPDVGVNSLQSYQLSPNHHFSLNVQTGDNG 188
Query: 189 RKYPELVLDKALDREEQPELSLTLTALDGGSPPRSGTAQINIQVLDINDNAPEFAQPLYE 248
PELVL++ALDREE L LTA DGG P RS T +I++ VLD NDNAP FAQ +Y
Sbjct: 189 AINPELVLERALDREEATAHHLVLTASDGGEPRRSSTVRIHVTVLDTNDNAPVFAQRIYR 248
Query: 249 VAVLENTPVNSVIVTVSASDLDTGSFGTISYAFFHASEEIRKTFQLNPITGDMQLVKYLN 308
V VLEN P + ++T +ASDLD G G ++Y F+ +E+ FQLN TG++ K L+
Sbjct: 249 VKVLENVPPGTWLLTATASDLDEGINGKVAYKFWKINEKQSLLFQLNENTGEISTAKSLD 308
Query: 309 FEAINSYEVDIEAKDGGGLSGKSTVIVQVVDVNDNPPELTLSSVNSPIPENSGE-TVLAV 367
+E + YE++I+A+DGGGL G + V++ V DVNDN PE+T++S+ SP+ E++ + TV+ +
Sbjct: 309 YEECSFYEMEIQAEDGGGLKGWTKVLISVEDVNDNRPEVTITSLFSPVREDAPQGTVILL 368
Query: 368 FSVSDLDSGDNGRVMCSIENNLPFFLKPSVENFYTLVSEGALDRETRSEYNITITITDLG 427
F+ D DSG NG+V+CSI+ NL F L+ S E++Y L++ LDRE SEYNIT+T TD G
Sbjct: 369 FNAHDRDSGKNGQVVCSIQENLSFTLENSEEDYYRLLTAQILDREKASEYNITVTATDRG 428
Query: 428 TPRLKTKYNITVLVSDVNDNAPAFTQISYTLFVRENNSPALHIGSVSATDRDSGTNAQVT 487
TP L T+ +IT+ V+D+NDN PAF+Q SY++++ ENN+ I SV A D DS N++V
Sbjct: 429 TPPLSTEIHITLQVTDINDNPPAFSQASYSVYLPENNARGTSIFSVIAYDPDSNENSRVI 488
Query: 488 YSLLPPQDPHLPLSSLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSSEALV 547
YSL PLS+ VSIN+D G L+AL S DYE + + +V A+D GSP LSS +
Sbjct: 489 YSLAEDTIQGSPLSTYVSINSDTGVLYALCSFDYEQFRDLQMQVTASDSGSPPLSSNVSL 548
Query: 548 RVLVLDANDNSPFVLYP-LQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQL 606
R+ VLD NDN+P +LYP L + EL PR+AEPGYLVTKVVAVD DSGQNAWLSY+L
Sbjct: 549 RLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRL 608
Query: 607 LKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGF 666
KA+EPGLF V H GEVRTAR L +RDA K LVV V+D+G+PP SAT TL V + D
Sbjct: 609 FKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAIADSI 668
Query: 667 SQPYLPLPE-AAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRL-----CRRSRAA 720
L PA +A LT+YLVVA+A VS +FL V+ +A+RL RA
Sbjct: 669 PDILADLGSLQIPADLEASDLTLYLVVAVAVVSCVFLTFVITLLALRLRHWHSSHLLRAT 728
Query: 721 SVGRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKP 769
S G VP F G V G Q+Y E LT S + F +P
Sbjct: 729 SDGLAGVPTSHFVG----VDGVRAFLQTYSQEFSLTADSRKSHLIFPQP 773
>gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 640 bits (1651), Expect = 0.0
Identities = 365/770 (47%), Positives = 490/770 (63%), Gaps = 16/770 (2%)
Query: 10 RQRQVLLLFVFLGGSLAGSESR--RYSVAEEKEKGFLIANLAKDLGLRVEELAARGAQVV 67
R QVLLL + G+L G+ + RYS+ EE EKG + N+ KDLGL +ELA G ++V
Sbjct: 10 RSEQVLLLTLL--GTLWGAAAAQIRYSIPEELEKGSFVGNIVKDLGLEPQELAEHGVRIV 67
Query: 68 SKGNKQHFQLSHQTGDLLLNEKLDREELCGPTEPCILHFQILLQNPLQFVTNELRIIDVN 127
S+G Q F L+ + G L+ ++DREELC + C++ F IL+++ L E+ I+D+N
Sbjct: 68 SRGRMQLFSLNPRNGSLVTAGRIDREELCAQSPRCLVSFNILVEDKLNLYPVEVEIVDIN 127
Query: 128 DHSPVFFENEMHLKILESTLPGTVIPLGNAEDLDVGRNSLQNYTITPNSHFHVLTRSRRD 187
D++P F + E+ +KILE+ P + PL D DVG NSLQ + ++ NSHF V +S
Sbjct: 128 DNTPRFLKEELEVKILENAAPSSRFPLMEVYDPDVGMNSLQGFKLSGNSHFSVDVQSEAH 187
Query: 188 GRKYPELVLDKALDREEQPELSLTLTALDGGSPPRSGTAQINIQVLDINDNAPEFAQPLY 247
G KYPELVL+ LDRE + L LTA+DGG P RS AQI + VLD+NDN P F QP+Y
Sbjct: 188 GPKYPELVLEGTLDREGEAVYRLVLTAMDGGDPVRSSVAQILVTVLDVNDNTPMFTQPVY 247
Query: 248 EVAVLENTPVNSVIVTVSASDLDTGSFGTISYAFFHASEEIRKTFQLNPITGDMQLVKYL 307
V+V EN PV + ++ V+A+D D G G ++Y+F +E+I + F LN +TG++ L
Sbjct: 248 RVSVPENLPVGTPVLAVTATDQDEGVHGEVTYSFVKITEKISQIFCLNVLTGEISTSANL 307
Query: 308 NFEAINSYEVDIEAKDGGGLSGKSTVIVQVVDVNDNPPELTLSSVNSPIPENSGE-TVLA 366
++E + YE+ +EA+DG GL ++ V++ ++DVNDN PE+ ++S + I E++ TV+A
Sbjct: 308 DYEDSSFYELGVEARDGPGLRDRAKVLITILDVNDNVPEVVVTSGSRTIAESAPPGTVIA 367
Query: 367 VFSVSDLDSGDNGRVMCSIENNLPFFLKPSVENFYTLVSEGALDRETRSEYNITITITDL 426
+F V D DSG NG V CSI +LPF L+ SV N+Y LV+ ALDRE YNIT+T TD
Sbjct: 368 LFQVFDRDSGLNGLVTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYNITVTATDK 427
Query: 427 GTPRLKTKYNITVLVSDVNDNAPAFTQISYTLFVRENNSPALHIGSVSATDRDSGTNAQV 486
GTP L T+ I++ V+D NDN P F SY+++V ENN I SV+A D D NAQV
Sbjct: 428 GTPPLSTETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDPDVDQNAQV 487
Query: 487 TYSLLPPQDPHLPLSSLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSSEAL 546
+YSL PLSS VSIN+D G L+ALRS DYE L+ + V A+D G P LSS
Sbjct: 488 SYSLAEDTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTASDSGDPPLSSNVS 547
Query: 547 VRVLVLDANDNSPFVLYP-LQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQ 605
+ + VLD NDN+P +LYP L + EL PR+AEPGYLVTKVVAVD DSGQNAWLSY+
Sbjct: 548 LSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYR 607
Query: 606 LLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDG 665
LLKA+EPGLF V H GEVRTAR L +RDA K LVV V+D+G+PP SAT TL V + D
Sbjct: 608 LLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADR 667
Query: 666 FSQPYLPLPEAAPAQAQADL-LTVYLVVALASVSSLFLFSVLLFVAVRLCR--RSR---A 719
L P+ D LT+YLVVA+A+VS +FL V++ +A+RL R +SR A
Sbjct: 668 IPDILADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLQRWHKSRLLQA 727
Query: 720 ASVGRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKP 769
+ G S+P F G V G Q+Y +EV LT S + F +P
Sbjct: 728 SGGGLASMPGSHFVG----VEGVRAFLQTYSHEVSLTADSRKSHLIFPQP 773
>gi|14196474 protocadherin gamma subfamily A, 6 isoform 2 precursor
[Homo sapiens]
Length = 818
Score = 640 bits (1651), Expect = 0.0
Identities = 365/770 (47%), Positives = 490/770 (63%), Gaps = 16/770 (2%)
Query: 10 RQRQVLLLFVFLGGSLAGSESR--RYSVAEEKEKGFLIANLAKDLGLRVEELAARGAQVV 67
R QVLLL + G+L G+ + RYS+ EE EKG + N+ KDLGL +ELA G ++V
Sbjct: 10 RSEQVLLLTLL--GTLWGAAAAQIRYSIPEELEKGSFVGNIVKDLGLEPQELAEHGVRIV 67
Query: 68 SKGNKQHFQLSHQTGDLLLNEKLDREELCGPTEPCILHFQILLQNPLQFVTNELRIIDVN 127
S+G Q F L+ + G L+ ++DREELC + C++ F IL+++ L E+ I+D+N
Sbjct: 68 SRGRMQLFSLNPRNGSLVTAGRIDREELCAQSPRCLVSFNILVEDKLNLYPVEVEIVDIN 127
Query: 128 DHSPVFFENEMHLKILESTLPGTVIPLGNAEDLDVGRNSLQNYTITPNSHFHVLTRSRRD 187
D++P F + E+ +KILE+ P + PL D DVG NSLQ + ++ NSHF V +S
Sbjct: 128 DNTPRFLKEELEVKILENAAPSSRFPLMEVYDPDVGMNSLQGFKLSGNSHFSVDVQSEAH 187
Query: 188 GRKYPELVLDKALDREEQPELSLTLTALDGGSPPRSGTAQINIQVLDINDNAPEFAQPLY 247
G KYPELVL+ LDRE + L LTA+DGG P RS AQI + VLD+NDN P F QP+Y
Sbjct: 188 GPKYPELVLEGTLDREGEAVYRLVLTAMDGGDPVRSSVAQILVTVLDVNDNTPMFTQPVY 247
Query: 248 EVAVLENTPVNSVIVTVSASDLDTGSFGTISYAFFHASEEIRKTFQLNPITGDMQLVKYL 307
V+V EN PV + ++ V+A+D D G G ++Y+F +E+I + F LN +TG++ L
Sbjct: 248 RVSVPENLPVGTPVLAVTATDQDEGVHGEVTYSFVKITEKISQIFCLNVLTGEISTSANL 307
Query: 308 NFEAINSYEVDIEAKDGGGLSGKSTVIVQVVDVNDNPPELTLSSVNSPIPENSGE-TVLA 366
++E + YE+ +EA+DG GL ++ V++ ++DVNDN PE+ ++S + I E++ TV+A
Sbjct: 308 DYEDSSFYELGVEARDGPGLRDRAKVLITILDVNDNVPEVVVTSGSRTIAESAPPGTVIA 367
Query: 367 VFSVSDLDSGDNGRVMCSIENNLPFFLKPSVENFYTLVSEGALDRETRSEYNITITITDL 426
+F V D DSG NG V CSI +LPF L+ SV N+Y LV+ ALDRE YNIT+T TD
Sbjct: 368 LFQVFDRDSGLNGLVTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYNITVTATDK 427
Query: 427 GTPRLKTKYNITVLVSDVNDNAPAFTQISYTLFVRENNSPALHIGSVSATDRDSGTNAQV 486
GTP L T+ I++ V+D NDN P F SY+++V ENN I SV+A D D NAQV
Sbjct: 428 GTPPLSTETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDPDVDQNAQV 487
Query: 487 TYSLLPPQDPHLPLSSLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSSEAL 546
+YSL PLSS VSIN+D G L+ALRS DYE L+ + V A+D G P LSS
Sbjct: 488 SYSLAEDTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTASDSGDPPLSSNVS 547
Query: 547 VRVLVLDANDNSPFVLYP-LQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQ 605
+ + VLD NDN+P +LYP L + EL PR+AEPGYLVTKVVAVD DSGQNAWLSY+
Sbjct: 548 LSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYR 607
Query: 606 LLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDG 665
LLKA+EPGLF V H GEVRTAR L +RDA K LVV V+D+G+PP SAT TL V + D
Sbjct: 608 LLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADR 667
Query: 666 FSQPYLPLPEAAPAQAQADL-LTVYLVVALASVSSLFLFSVLLFVAVRLCR--RSR---A 719
L P+ D LT+YLVVA+A+VS +FL V++ +A+RL R +SR A
Sbjct: 668 IPDILADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLQRWHKSRLLQA 727
Query: 720 ASVGRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKP 769
+ G S+P F G V G Q+Y +EV LT S + F +P
Sbjct: 728 SGGGLASMPGSHFVG----VEGVRAFLQTYSHEVSLTADSRKSHLIFPQP 773
>gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 639 bits (1647), Expect = 0.0
Identities = 352/752 (46%), Positives = 483/752 (64%), Gaps = 12/752 (1%)
Query: 26 AGSESRRYSVAEEKEKGFLIANLAKDLGLRVEELAARGAQVVSKGNKQHFQLSHQTGDLL 85
AG+ + YSV EE +KG + N+AKDLGL+ +ELA G ++VS+G F L+ ++G L+
Sbjct: 26 AGAGNIHYSVPEETDKGSFVGNIAKDLGLQPQELADGGVRIVSRGRMPLFALNPRSGSLI 85
Query: 86 LNEKLDREELCGPTEPCILHFQILLQNPLQFVTNELRIIDVNDHSPVFFENEMHLKILES 145
++DREELC + PC++ F IL+++ ++ E+ IID+ND++P F E+ K+ E
Sbjct: 86 TARRIDREELCAQSMPCLVSFNILVEDKMKLFPVEVEIIDINDNTPQFQLEELEFKMNEI 145
Query: 146 TLPGTVIPLGNAEDLDVGRNSLQNYTITPNSHFHVLTRSRRDGRKYPELVLDKALDREEQ 205
T PGT + L +DLDVG NSLQ+Y ++ N HF + + DG ++PE+VL LDREE+
Sbjct: 146 TTPGTRVSLPFGQDLDVGMNSLQSYQLSSNPHFSLDVQQGADGPQHPEMVLQSPLDREEE 205
Query: 206 PELSLTLTALDGGSPPRSGTAQINIQVLDINDNAPEFAQPLYEVAVLENTPVNSVIVTVS 265
L LTA DGG P RSGT +I IQV+D NDN P F Q Y + V EN P+ + ++ V+
Sbjct: 206 AVHHLILTASDGGEPVRSGTLRIYIQVVDANDNPPAFTQAQYHINVPENVPLGTQLLMVN 265
Query: 266 ASDLDTGSFGTISYAFFHASEEIRKTFQLNPITGDMQLVKYLNFEAINSYEVDIEAKDGG 325
A+D D G+ G ++Y+F + + + F+L+ TG++ + L+FE Y ++++A+DG
Sbjct: 266 ATDPDEGANGEVTYSFHNVDHRVAQIFRLDSYTGEISNKEPLDFEEYKMYSMEVQAQDGA 325
Query: 326 GLSGKSTVIVQVVDVNDNPPELTLSSVNSPIPEN-SGETVLAVFSVSDLDSGDNGRVMCS 384
GL K V+++V+DVNDN PE+T++SV + +PEN T++A+ SV D DSGDNG C
Sbjct: 326 GLMAKVKVLIKVLDVNDNAPEVTITSVTTAVPENFPPGTIIALISVHDQDSGDNGYTTCF 385
Query: 385 IENNLPFFLKPSVENFYTLVSEGALDRETRSEYNITITITDLGTPRLKTKYNITVLVSDV 444
I NLPF L+ V+N+Y LV+E LDRE S YNITIT D GTP L T+ +I++LV+D+
Sbjct: 386 IPGNLPFKLEKLVDNYYRLVTERTLDRELISGYNITITAIDQGTPALSTETHISLLVTDI 445
Query: 445 NDNAPAFTQISYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLLPPQDPHLPLSSLV 504
NDN+P F Q SY+ ++ ENN I SV A D DS NAQ+TYSL+ PLS+ +
Sbjct: 446 NDNSPVFHQDSYSAYIPENNPRGASIFSVRAHDLDSNENAQITYSLIEDTIQGAPLSAYL 505
Query: 505 SINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSSEALVRVLVLDANDNSPFVLYP 564
SIN+D G L+ALRS DYE + + +V A D G P LSS + + +LD NDN+P +LYP
Sbjct: 506 SINSDTGVLYALRSFDYEQFRDMQLKVMARDSGDPPLSSNVSLSLFLLDQNDNAPEILYP 565
Query: 565 -LQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGE 623
L + EL P +AEPGYLVTKVVAVD DSGQNAWLSY+LLKA+EPGLF V H GE
Sbjct: 566 ALPTDGSTGVELAPLSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGE 625
Query: 624 VRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYLPLPEAAPAQAQA 683
VRTAR L +RDA K LVV V+D+G+PP SAT TL V + D S L P+
Sbjct: 626 VRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRISDILADLGSLEPSAKPN 685
Query: 684 DL-LTVYLVVALASVSSLFLFSVLLFVAVRLCR--RSR---AASVGRCSVPEGPFPGQMV 737
D LT+YLVVA A+VS +FL V++ +A RL R +SR A+ G S+P F G
Sbjct: 686 DSDLTLYLVVAAAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGGLASMPGSHFVG--- 742
Query: 738 DVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKP 769
V G Q+Y +EV LT S + F +P
Sbjct: 743 -VDGVRAFLQTYSHEVSLTADSRKSHLIFPQP 773
>gi|14196459 protocadherin gamma subfamily A, 1 isoform 2 precursor
[Homo sapiens]
Length = 823
Score = 639 bits (1647), Expect = 0.0
Identities = 352/752 (46%), Positives = 483/752 (64%), Gaps = 12/752 (1%)
Query: 26 AGSESRRYSVAEEKEKGFLIANLAKDLGLRVEELAARGAQVVSKGNKQHFQLSHQTGDLL 85
AG+ + YSV EE +KG + N+AKDLGL+ +ELA G ++VS+G F L+ ++G L+
Sbjct: 26 AGAGNIHYSVPEETDKGSFVGNIAKDLGLQPQELADGGVRIVSRGRMPLFALNPRSGSLI 85
Query: 86 LNEKLDREELCGPTEPCILHFQILLQNPLQFVTNELRIIDVNDHSPVFFENEMHLKILES 145
++DREELC + PC++ F IL+++ ++ E+ IID+ND++P F E+ K+ E
Sbjct: 86 TARRIDREELCAQSMPCLVSFNILVEDKMKLFPVEVEIIDINDNTPQFQLEELEFKMNEI 145
Query: 146 TLPGTVIPLGNAEDLDVGRNSLQNYTITPNSHFHVLTRSRRDGRKYPELVLDKALDREEQ 205
T PGT + L +DLDVG NSLQ+Y ++ N HF + + DG ++PE+VL LDREE+
Sbjct: 146 TTPGTRVSLPFGQDLDVGMNSLQSYQLSSNPHFSLDVQQGADGPQHPEMVLQSPLDREEE 205
Query: 206 PELSLTLTALDGGSPPRSGTAQINIQVLDINDNAPEFAQPLYEVAVLENTPVNSVIVTVS 265
L LTA DGG P RSGT +I IQV+D NDN P F Q Y + V EN P+ + ++ V+
Sbjct: 206 AVHHLILTASDGGEPVRSGTLRIYIQVVDANDNPPAFTQAQYHINVPENVPLGTQLLMVN 265
Query: 266 ASDLDTGSFGTISYAFFHASEEIRKTFQLNPITGDMQLVKYLNFEAINSYEVDIEAKDGG 325
A+D D G+ G ++Y+F + + + F+L+ TG++ + L+FE Y ++++A+DG
Sbjct: 266 ATDPDEGANGEVTYSFHNVDHRVAQIFRLDSYTGEISNKEPLDFEEYKMYSMEVQAQDGA 325
Query: 326 GLSGKSTVIVQVVDVNDNPPELTLSSVNSPIPEN-SGETVLAVFSVSDLDSGDNGRVMCS 384
GL K V+++V+DVNDN PE+T++SV + +PEN T++A+ SV D DSGDNG C
Sbjct: 326 GLMAKVKVLIKVLDVNDNAPEVTITSVTTAVPENFPPGTIIALISVHDQDSGDNGYTTCF 385
Query: 385 IENNLPFFLKPSVENFYTLVSEGALDRETRSEYNITITITDLGTPRLKTKYNITVLVSDV 444
I NLPF L+ V+N+Y LV+E LDRE S YNITIT D GTP L T+ +I++LV+D+
Sbjct: 386 IPGNLPFKLEKLVDNYYRLVTERTLDRELISGYNITITAIDQGTPALSTETHISLLVTDI 445
Query: 445 NDNAPAFTQISYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLLPPQDPHLPLSSLV 504
NDN+P F Q SY+ ++ ENN I SV A D DS NAQ+TYSL+ PLS+ +
Sbjct: 446 NDNSPVFHQDSYSAYIPENNPRGASIFSVRAHDLDSNENAQITYSLIEDTIQGAPLSAYL 505
Query: 505 SINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSSEALVRVLVLDANDNSPFVLYP 564
SIN+D G L+ALRS DYE + + +V A D G P LSS + + +LD NDN+P +LYP
Sbjct: 506 SINSDTGVLYALRSFDYEQFRDMQLKVMARDSGDPPLSSNVSLSLFLLDQNDNAPEILYP 565
Query: 565 -LQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGE 623
L + EL P +AEPGYLVTKVVAVD DSGQNAWLSY+LLKA+EPGLF V H GE
Sbjct: 566 ALPTDGSTGVELAPLSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGE 625
Query: 624 VRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYLPLPEAAPAQAQA 683
VRTAR L +RDA K LVV V+D+G+PP SAT TL V + D S L P+
Sbjct: 626 VRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRISDILADLGSLEPSAKPN 685
Query: 684 DL-LTVYLVVALASVSSLFLFSVLLFVAVRLCR--RSR---AASVGRCSVPEGPFPGQMV 737
D LT+YLVVA A+VS +FL V++ +A RL R +SR A+ G S+P F G
Sbjct: 686 DSDLTLYLVVAAAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGGLASMPGSHFVG--- 742
Query: 738 DVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKP 769
V G Q+Y +EV LT S + F +P
Sbjct: 743 -VDGVRAFLQTYSHEVSLTADSRKSHLIFPQP 773
>gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precursor
[Homo sapiens]
Length = 936
Score = 637 bits (1644), Expect = 0.0
Identities = 356/764 (46%), Positives = 489/764 (64%), Gaps = 11/764 (1%)
Query: 14 VLLLFVFLGGSL-AGSESRRYSVAEEKEKGFLIANLAKDLGLRVEELAARGAQVVSKGNK 72
++LL +F G AG+ YS+ EE EKG + N++KDLGL ELA RG ++VS+G
Sbjct: 17 LVLLCLFFGIPWEAGARQISYSIPEELEKGSFVGNISKDLGLAPRELAERGVRIVSRGRT 76
Query: 73 QHFQLSHQTGDLLLNEKLDREELCGPTEPCILHFQILLQNPLQFVTNELRIIDVNDHSPV 132
Q F L+ ++G L+ ++DREELC + C++ F IL+++ ++ E+ + D+ND++P
Sbjct: 77 QLFSLNPRSGSLITAGRIDREELCAQSARCVVSFNILVEDRVKLFGIEIEVTDINDNAPK 136
Query: 133 FFENEMHLKILESTLPGTVIPLGNAEDLDVGRNSLQNYTITPNSHFHVLTRSRRDGRKYP 192
F + +KI E+ G PL A D DVG NSLQ+Y ++PN HF + +SR +G KYP
Sbjct: 137 FQAENLDVKINENVAAGMRFPLPEAIDPDVGVNSLQSYQLSPNKHFSLRVQSRANGVKYP 196
Query: 193 ELVLDKALDREEQPELSLTLTALDGGSPPRSGTAQINIQVLDINDNAPEFAQPLYEVAVL 252
ELVL+ +LDREE+ L LTA DGG P RSGT +++ V D NDNAP F P Y V+V
Sbjct: 197 ELVLEHSLDREEEAIHHLVLTASDGGDPLRSGTVLVSVTVFDANDNAPVFTLPEYRVSVP 256
Query: 253 ENTPVNSVIVTVSASDLDTGSFGTISYAFFHASEEIRKTFQLNPITGDMQLVKYLNFEAI 312
EN PV + ++TV+A+D D G+ G ++Y+F + FQLN TG++++ + L++E
Sbjct: 257 ENLPVGTQLLTVTATDRDEGANGEVTYSFRKLPDTQLLKFQLNKYTGEIKISENLDYEET 316
Query: 313 NSYEVDIEAKDGGGLSGKSTVIVQVVDVNDNPPELTLSSVNSPIPENSG-ETVLAVFSVS 371
YE++I+A+DGG + V++ V DVNDN PELT++S+ SP+ E+S TV+A+ +V
Sbjct: 317 GFYEIEIQAEDGGAYLATAKVLITVEDVNDNSPELTITSLFSPVTEDSPLGTVVALLNVH 376
Query: 372 DLDSGDNGRVMCSIENNLPFFLKPSVENFYTLVSEGALDRETRSEYNITITITDLGTPRL 431
DLDS NG+V CSI LPF L+ S++++Y LV ALDRE S YNIT+T TD G+P L
Sbjct: 377 DLDSEQNGQVTCSILAYLPFKLEKSIDSYYRLVIHRALDREQVSSYNITVTATDGGSPPL 436
Query: 432 KTKYNITVLVSDVNDNAPAFTQISYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLL 491
T+ + + V+D+NDN P F+Q+SY ++ ENN+ I SV+A D DS NAQ+ YSL
Sbjct: 437 STEAHFMLQVADINDNPPTFSQVSYFTYIPENNARGASIFSVTALDPDSKENAQIIYSLA 496
Query: 492 PPQDPHLPLSSLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSSEALVRVLV 551
+PLSS +SIN+D G L+ALRS DYE + +V A+D G P LSS + + V
Sbjct: 497 EDTIQGVPLSSYISINSDTGVLYALRSFDYEQFHELQMQVTASDSGDPPLSSNVSLSLFV 556
Query: 552 LDANDNSPFVLYP-LQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKAT 610
LD NDN+P +LYP L + EL PR+AEPGYLVTKVVAVD DSGQNAWLSY+LLKA+
Sbjct: 557 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKAS 616
Query: 611 EPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPY 670
EPGLF V H GEVRTAR L +RDA K LVV V+D+G+PP SAT TL V + D Q
Sbjct: 617 EPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPQVL 676
Query: 671 LPLPE-AAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCR----RSRAASVGRC 725
L +PA ++ LT+YLVVA+A+VS +FL V++ +A RL R R AS G
Sbjct: 677 ADLGSFESPANSETSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGGL 736
Query: 726 SVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKP 769
+ G V V G Q+Y +EV LT S + F +P
Sbjct: 737 TGVSG---SHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQP 777
>gi|14196448 protocadherin gamma subfamily A, 10 isoform 2 precursor
[Homo sapiens]
Length = 850
Score = 637 bits (1644), Expect = 0.0
Identities = 356/764 (46%), Positives = 489/764 (64%), Gaps = 11/764 (1%)
Query: 14 VLLLFVFLGGSL-AGSESRRYSVAEEKEKGFLIANLAKDLGLRVEELAARGAQVVSKGNK 72
++LL +F G AG+ YS+ EE EKG + N++KDLGL ELA RG ++VS+G
Sbjct: 17 LVLLCLFFGIPWEAGARQISYSIPEELEKGSFVGNISKDLGLAPRELAERGVRIVSRGRT 76
Query: 73 QHFQLSHQTGDLLLNEKLDREELCGPTEPCILHFQILLQNPLQFVTNELRIIDVNDHSPV 132
Q F L+ ++G L+ ++DREELC + C++ F IL+++ ++ E+ + D+ND++P
Sbjct: 77 QLFSLNPRSGSLITAGRIDREELCAQSARCVVSFNILVEDRVKLFGIEIEVTDINDNAPK 136
Query: 133 FFENEMHLKILESTLPGTVIPLGNAEDLDVGRNSLQNYTITPNSHFHVLTRSRRDGRKYP 192
F + +KI E+ G PL A D DVG NSLQ+Y ++PN HF + +SR +G KYP
Sbjct: 137 FQAENLDVKINENVAAGMRFPLPEAIDPDVGVNSLQSYQLSPNKHFSLRVQSRANGVKYP 196
Query: 193 ELVLDKALDREEQPELSLTLTALDGGSPPRSGTAQINIQVLDINDNAPEFAQPLYEVAVL 252
ELVL+ +LDREE+ L LTA DGG P RSGT +++ V D NDNAP F P Y V+V
Sbjct: 197 ELVLEHSLDREEEAIHHLVLTASDGGDPLRSGTVLVSVTVFDANDNAPVFTLPEYRVSVP 256
Query: 253 ENTPVNSVIVTVSASDLDTGSFGTISYAFFHASEEIRKTFQLNPITGDMQLVKYLNFEAI 312
EN PV + ++TV+A+D D G+ G ++Y+F + FQLN TG++++ + L++E
Sbjct: 257 ENLPVGTQLLTVTATDRDEGANGEVTYSFRKLPDTQLLKFQLNKYTGEIKISENLDYEET 316
Query: 313 NSYEVDIEAKDGGGLSGKSTVIVQVVDVNDNPPELTLSSVNSPIPENSG-ETVLAVFSVS 371
YE++I+A+DGG + V++ V DVNDN PELT++S+ SP+ E+S TV+A+ +V
Sbjct: 317 GFYEIEIQAEDGGAYLATAKVLITVEDVNDNSPELTITSLFSPVTEDSPLGTVVALLNVH 376
Query: 372 DLDSGDNGRVMCSIENNLPFFLKPSVENFYTLVSEGALDRETRSEYNITITITDLGTPRL 431
DLDS NG+V CSI LPF L+ S++++Y LV ALDRE S YNIT+T TD G+P L
Sbjct: 377 DLDSEQNGQVTCSILAYLPFKLEKSIDSYYRLVIHRALDREQVSSYNITVTATDGGSPPL 436
Query: 432 KTKYNITVLVSDVNDNAPAFTQISYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLL 491
T+ + + V+D+NDN P F+Q+SY ++ ENN+ I SV+A D DS NAQ+ YSL
Sbjct: 437 STEAHFMLQVADINDNPPTFSQVSYFTYIPENNARGASIFSVTALDPDSKENAQIIYSLA 496
Query: 492 PPQDPHLPLSSLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSSEALVRVLV 551
+PLSS +SIN+D G L+ALRS DYE + +V A+D G P LSS + + V
Sbjct: 497 EDTIQGVPLSSYISINSDTGVLYALRSFDYEQFHELQMQVTASDSGDPPLSSNVSLSLFV 556
Query: 552 LDANDNSPFVLYP-LQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKAT 610
LD NDN+P +LYP L + EL PR+AEPGYLVTKVVAVD DSGQNAWLSY+LLKA+
Sbjct: 557 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKAS 616
Query: 611 EPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPY 670
EPGLF V H GEVRTAR L +RDA K LVV V+D+G+PP SAT TL V + D Q
Sbjct: 617 EPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPQVL 676
Query: 671 LPLPE-AAPAQAQADLLTVYLVVALASVSSLFLFSVLLFVAVRLCR----RSRAASVGRC 725
L +PA ++ LT+YLVVA+A+VS +FL V++ +A RL R R AS G
Sbjct: 677 ADLGSFESPANSETSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGGL 736
Query: 726 SVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKP 769
+ G V V G Q+Y +EV LT S + F +P
Sbjct: 737 TGVSG---SHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQP 777
>gi|11056030 protocadherin gamma subfamily A, 2 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 637 bits (1642), Expect = 0.0
Identities = 358/762 (46%), Positives = 482/762 (63%), Gaps = 8/762 (1%)
Query: 15 LLLFVFLGGSL--AGSESRRYSVAEEKEKGFLIANLAKDLGLRVEELAARGAQVVSKGNK 72
L+L FL +L A + RYSV EE ++G + N+AKDLGL LA +G ++VS+G
Sbjct: 13 LVLLCFLLATLWEARAGQIRYSVREEIDRGSFVGNIAKDLGLEPLALAEQGVRIVSRGRS 72
Query: 73 QHFQLSHQTGDLLLNEKLDREELCGPTEPCILHFQILLQNPLQFVTNELRIIDVNDHSPV 132
Q F L+ ++G L+ ++DREELC + PC+L+F ILL++ L + E+ I D+ND++P
Sbjct: 73 QLFALNPRSGSLVTANRIDREELCAQSAPCLLNFNILLEDKLTIYSVEVEITDINDNAPR 132
Query: 133 FFENEMHLKILESTLPGTVIPLGNAEDLDVGRNSLQNYTITPNSHFHVLTRSRRDGRKYP 192
F E+ LKI E+T PG IPL NA D DVG N+LQ Y + PN HF + R DG KYP
Sbjct: 133 FGVEELELKISETTTPGFRIPLKNAHDADVGENALQKYALNPNDHFSLDVRRGADGNKYP 192
Query: 193 ELVLDKALDREEQPELSLTLTALDGGSPPRSGTAQINIQVLDINDNAPEFAQPLYEVAVL 252
ELVL+++LDREE+ L L A DGG P SGT++I ++VLD NDNAP F QP Y +++
Sbjct: 193 ELVLERSLDREEEAVHHLVLVASDGGDPVLSGTSRICVKVLDANDNAPVFTQPEYRISIP 252
Query: 253 ENTPVNSVIVTVSASDLDTGSFGTISYAFFHASEEIRKTFQLNPITGDMQLVKYLNFEAI 312
ENT V + I+TV+A+D D G + + Y + E + F+L +G++ ++K L++E
Sbjct: 253 ENTLVGTRILTVTATDADEGYYAQVVYFLEKSPGETSEVFELKSTSGELTIIKDLDYEDA 312
Query: 313 NSYEVDIEAKDGGGLSGKSTVIVQVVDVNDNPPELTLSSVNSPIPENS-GETVLAVFSVS 371
+E+DIEA+DG GL ++ VIV V+DVNDN PE ++S S + E+S T++ +F+V
Sbjct: 313 TFHEIDIEAQDGPGLLTRAKVIVTVLDVNDNAPEFYMTSATSSVSEDSLPGTIIGLFNVH 372
Query: 372 DLDSGDNGRVMCSIENNLPFFLKPSVENFYTLVSEGALDRETRSEYNITITITDLGTPRL 431
D DSG N CS+ +LPF L+ SV+N+Y LV+ ALDRE S YNIT+T D G P L
Sbjct: 373 DRDSGQNAFTTCSLPEDLPFKLEKSVDNYYRLVTTRALDREQFSFYNITLTAKDGGNPSL 432
Query: 432 KTKYNITVLVSDVNDNAPAFTQISYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLL 491
T +I + V+D+NDNAPAF++ SY+ ++ ENN + SV+A D DS NA VTYS
Sbjct: 433 STDAHILLQVADINDNAPAFSRTSYSTYIPENNPRGASVFSVTAHDPDSNDNAHVTYSFA 492
Query: 492 PPQDPHLPLSSLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSSEALVRVLV 551
PLSS +SIN+D G L+ALRS DYE L+ + V A D G+P LSS + + V
Sbjct: 493 EDTVQGAPLSSYISINSDTGVLYALRSFDYEQLRDLQVWVIARDSGNPPLSSNVSLSLFV 552
Query: 552 LDANDNSPFVLYP-LQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKAT 610
LD NDN+P +LYP + EL PR+AEPGYLVTKVVAVD DSGQNAWLSY LLKA+
Sbjct: 553 LDQNDNAPEILYPAFPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYHLLKAS 612
Query: 611 EPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPY 670
EPGLF V H GEVRTAR L +RDA K LVV ++D+G+PP SAT TL V + D
Sbjct: 613 EPGLFSVGLHTGEVRTARALLDRDALKQSLVVAIQDHGQPPLSATVTLTVAVADRIPDIL 672
Query: 671 LPLPEAAPAQAQADL-LTVYLVVALASVSSLFLFSVLLFVAVRLCR--RSRAASVGRCSV 727
L P+ D LT+YLVVA+A+VS +FL V++ +A RL R +SR S+
Sbjct: 673 ADLGSLEPSAIPNDSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGSL 732
Query: 728 PEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKP 769
G V V G Q+Y +EV LT S + F +P
Sbjct: 733 -TGMQSSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQP 773
>gi|14196462 protocadherin gamma subfamily A, 2 isoform 2 precursor
[Homo sapiens]
Length = 823
Score = 637 bits (1642), Expect = 0.0
Identities = 358/762 (46%), Positives = 482/762 (63%), Gaps = 8/762 (1%)
Query: 15 LLLFVFLGGSL--AGSESRRYSVAEEKEKGFLIANLAKDLGLRVEELAARGAQVVSKGNK 72
L+L FL +L A + RYSV EE ++G + N+AKDLGL LA +G ++VS+G
Sbjct: 13 LVLLCFLLATLWEARAGQIRYSVREEIDRGSFVGNIAKDLGLEPLALAEQGVRIVSRGRS 72
Query: 73 QHFQLSHQTGDLLLNEKLDREELCGPTEPCILHFQILLQNPLQFVTNELRIIDVNDHSPV 132
Q F L+ ++G L+ ++DREELC + PC+L+F ILL++ L + E+ I D+ND++P
Sbjct: 73 QLFALNPRSGSLVTANRIDREELCAQSAPCLLNFNILLEDKLTIYSVEVEITDINDNAPR 132
Query: 133 FFENEMHLKILESTLPGTVIPLGNAEDLDVGRNSLQNYTITPNSHFHVLTRSRRDGRKYP 192
F E+ LKI E+T PG IPL NA D DVG N+LQ Y + PN HF + R DG KYP
Sbjct: 133 FGVEELELKISETTTPGFRIPLKNAHDADVGENALQKYALNPNDHFSLDVRRGADGNKYP 192
Query: 193 ELVLDKALDREEQPELSLTLTALDGGSPPRSGTAQINIQVLDINDNAPEFAQPLYEVAVL 252
ELVL+++LDREE+ L L A DGG P SGT++I ++VLD NDNAP F QP Y +++
Sbjct: 193 ELVLERSLDREEEAVHHLVLVASDGGDPVLSGTSRICVKVLDANDNAPVFTQPEYRISIP 252
Query: 253 ENTPVNSVIVTVSASDLDTGSFGTISYAFFHASEEIRKTFQLNPITGDMQLVKYLNFEAI 312
ENT V + I+TV+A+D D G + + Y + E + F+L +G++ ++K L++E
Sbjct: 253 ENTLVGTRILTVTATDADEGYYAQVVYFLEKSPGETSEVFELKSTSGELTIIKDLDYEDA 312
Query: 313 NSYEVDIEAKDGGGLSGKSTVIVQVVDVNDNPPELTLSSVNSPIPENS-GETVLAVFSVS 371
+E+DIEA+DG GL ++ VIV V+DVNDN PE ++S S + E+S T++ +F+V
Sbjct: 313 TFHEIDIEAQDGPGLLTRAKVIVTVLDVNDNAPEFYMTSATSSVSEDSLPGTIIGLFNVH 372
Query: 372 DLDSGDNGRVMCSIENNLPFFLKPSVENFYTLVSEGALDRETRSEYNITITITDLGTPRL 431
D DSG N CS+ +LPF L+ SV+N+Y LV+ ALDRE S YNIT+T D G P L
Sbjct: 373 DRDSGQNAFTTCSLPEDLPFKLEKSVDNYYRLVTTRALDREQFSFYNITLTAKDGGNPSL 432
Query: 432 KTKYNITVLVSDVNDNAPAFTQISYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLL 491
T +I + V+D+NDNAPAF++ SY+ ++ ENN + SV+A D DS NA VTYS
Sbjct: 433 STDAHILLQVADINDNAPAFSRTSYSTYIPENNPRGASVFSVTAHDPDSNDNAHVTYSFA 492
Query: 492 PPQDPHLPLSSLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSSEALVRVLV 551
PLSS +SIN+D G L+ALRS DYE L+ + V A D G+P LSS + + V
Sbjct: 493 EDTVQGAPLSSYISINSDTGVLYALRSFDYEQLRDLQVWVIARDSGNPPLSSNVSLSLFV 552
Query: 552 LDANDNSPFVLYP-LQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKAT 610
LD NDN+P +LYP + EL PR+AEPGYLVTKVVAVD DSGQNAWLSY LLKA+
Sbjct: 553 LDQNDNAPEILYPAFPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYHLLKAS 612
Query: 611 EPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPY 670
EPGLF V H GEVRTAR L +RDA K LVV ++D+G+PP SAT TL V + D
Sbjct: 613 EPGLFSVGLHTGEVRTARALLDRDALKQSLVVAIQDHGQPPLSATVTLTVAVADRIPDIL 672
Query: 671 LPLPEAAPAQAQADL-LTVYLVVALASVSSLFLFSVLLFVAVRLCR--RSRAASVGRCSV 727
L P+ D LT+YLVVA+A+VS +FL V++ +A RL R +SR S+
Sbjct: 673 ADLGSLEPSAIPNDSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGSL 732
Query: 728 PEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKP 769
G V V G Q+Y +EV LT S + F +P
Sbjct: 733 -TGMQSSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQP 773
>gi|14196468 protocadherin gamma subfamily A, 4 isoform 2 precursor
[Homo sapiens]
Length = 820
Score = 634 bits (1635), Expect = 0.0
Identities = 354/750 (47%), Positives = 482/750 (64%), Gaps = 12/750 (1%)
Query: 28 SESRRYSVAEEKEKGFLIANLAKDLGLRVEELAARGAQVVSKGNKQHFQLSHQTGDLLLN 87
+E YSV EE+E+G ++ N+AKDLGL ELA RG ++VS+G Q F L+ ++G L+
Sbjct: 28 AEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVSRGRTQLFALNPRSGTLVTA 87
Query: 88 EKLDREELCGPTEPCILHFQILLQNPLQFVTNELRIIDVNDHSPVFFENEMHLKILESTL 147
++DREELC + C+ + +ILL++ ++ + E+ IIDVND+ P F + +K+ E+
Sbjct: 88 GRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVNDNPPSFGTEQREIKVAENEN 147
Query: 148 PGTVIPLGNAEDLDVGRNSLQNYTITPNSHFHVLTRSRRDGRKYPELVLDKALDREEQPE 207
PG PL A D DVG NSLQ Y + N +F + +S DG KYPELVL++ALDREE+
Sbjct: 148 PGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADGIKYPELVLERALDREEEAV 207
Query: 208 LSLTLTALDGGSPPRSGTAQINIQVLDINDNAPEFAQPLYEVAVLENTPVNSVIVTVSAS 267
L LTA DGG P RSGTA+I I ++D NDNAP F QP Y V+V EN PV + ++TV A+
Sbjct: 208 HHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHVSVRENVPVGTRLLTVKAT 267
Query: 268 DLDTGSFGTISYAFFHASEEIRKTFQLNPITGDMQLVKYLNFEAINSYEVDIEAKDGGGL 327
D D G+ G ++Y+F ++I + FQLN ++GD+ ++ L++E Y++D+EA DG GL
Sbjct: 268 DPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGLDYEDSGFYDIDVEAHDGPGL 327
Query: 328 SGKSTVIVQVVDVNDNPPELTLSSVNSPIPENSGE-TVLAVFSVSDLDSGDNGRVMCSIE 386
+S V+V V+D NDN PE+T++S+ S + E+S TV+A+F+V D DSG NG V CSI
Sbjct: 328 RARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFNVHDSDSGGNGLVTCSIP 387
Query: 387 NNLPFFLKPSVENFYTLVSEGALDRETRSEYNITITITDLGTPRLKTKYNITVLVSDVND 446
+NLPF L+ + N+Y L++ LDRE SEYNIT+T TD GTP L T+ +I++ V D+ND
Sbjct: 388 DNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTPPLSTETHISLQVMDIND 447
Query: 447 NAPAFTQISYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLLPPQDPHLPLSSLVSI 506
N P F SY+ ++ ENN I S++A D DSG NA++TYSL PLSS VSI
Sbjct: 448 NPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYSLAEDTFQGAPLSSYVSI 507
Query: 507 NADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSSEALVRVLVLDANDNSPFVLYP-L 565
N++ G L+AL S DYE + + + A+D G P LSS + + VLD NDN P +LYP
Sbjct: 508 NSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSLSLFVLDQNDNVPEILYPTF 567
Query: 566 QNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEVR 625
+ EL PR+A+ GYLVTKVVAVD DSGQNAWLSY LLK++EPGLF V H GEVR
Sbjct: 568 PTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLLKSSEPGLFAVGLHTGEVR 627
Query: 626 TARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYLPLPEAAPAQAQADL 685
TAR L +RDA K RLVV+V+D+G+PP SAT TL V + D L P+ D
Sbjct: 628 TARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSIPDVLADLGSLKPSADPDDS 687
Query: 686 -LTVYLVVALASVSSLFLFSVLLFVAVRLCR--RSR---AASVGRCSVPEGPFPGQMVDV 739
LT+YLVVA+A+VS +FL V + +A++L R +SR A VP F G V
Sbjct: 688 GLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKSRLLHAEGSRLAGVPASHFVG----V 743
Query: 740 SGTGTLSQSYQYEVCLTGGSGTNEFKFLKP 769
G Q+Y +EV LT S + F +P
Sbjct: 744 DGVRAFLQTYSHEVSLTADSRKSHLIFSQP 773
>gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 634 bits (1635), Expect = 0.0
Identities = 354/750 (47%), Positives = 482/750 (64%), Gaps = 12/750 (1%)
Query: 28 SESRRYSVAEEKEKGFLIANLAKDLGLRVEELAARGAQVVSKGNKQHFQLSHQTGDLLLN 87
+E YSV EE+E+G ++ N+AKDLGL ELA RG ++VS+G Q F L+ ++G L+
Sbjct: 28 AEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVSRGRTQLFALNPRSGTLVTA 87
Query: 88 EKLDREELCGPTEPCILHFQILLQNPLQFVTNELRIIDVNDHSPVFFENEMHLKILESTL 147
++DREELC + C+ + +ILL++ ++ + E+ IIDVND+ P F + +K+ E+
Sbjct: 88 GRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVNDNPPSFGTEQREIKVAENEN 147
Query: 148 PGTVIPLGNAEDLDVGRNSLQNYTITPNSHFHVLTRSRRDGRKYPELVLDKALDREEQPE 207
PG PL A D DVG NSLQ Y + N +F + +S DG KYPELVL++ALDREE+
Sbjct: 148 PGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADGIKYPELVLERALDREEEAV 207
Query: 208 LSLTLTALDGGSPPRSGTAQINIQVLDINDNAPEFAQPLYEVAVLENTPVNSVIVTVSAS 267
L LTA DGG P RSGTA+I I ++D NDNAP F QP Y V+V EN PV + ++TV A+
Sbjct: 208 HHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHVSVRENVPVGTRLLTVKAT 267
Query: 268 DLDTGSFGTISYAFFHASEEIRKTFQLNPITGDMQLVKYLNFEAINSYEVDIEAKDGGGL 327
D D G+ G ++Y+F ++I + FQLN ++GD+ ++ L++E Y++D+EA DG GL
Sbjct: 268 DPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGLDYEDSGFYDIDVEAHDGPGL 327
Query: 328 SGKSTVIVQVVDVNDNPPELTLSSVNSPIPENSGE-TVLAVFSVSDLDSGDNGRVMCSIE 386
+S V+V V+D NDN PE+T++S+ S + E+S TV+A+F+V D DSG NG V CSI
Sbjct: 328 RARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFNVHDSDSGGNGLVTCSIP 387
Query: 387 NNLPFFLKPSVENFYTLVSEGALDRETRSEYNITITITDLGTPRLKTKYNITVLVSDVND 446
+NLPF L+ + N+Y L++ LDRE SEYNIT+T TD GTP L T+ +I++ V D+ND
Sbjct: 388 DNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTPPLSTETHISLQVMDIND 447
Query: 447 NAPAFTQISYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLLPPQDPHLPLSSLVSI 506
N P F SY+ ++ ENN I S++A D DSG NA++TYSL PLSS VSI
Sbjct: 448 NPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYSLAEDTFQGAPLSSYVSI 507
Query: 507 NADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSSEALVRVLVLDANDNSPFVLYP-L 565
N++ G L+AL S DYE + + + A+D G P LSS + + VLD NDN P +LYP
Sbjct: 508 NSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSLSLFVLDQNDNVPEILYPTF 567
Query: 566 QNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEVR 625
+ EL PR+A+ GYLVTKVVAVD DSGQNAWLSY LLK++EPGLF V H GEVR
Sbjct: 568 PTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLLKSSEPGLFAVGLHTGEVR 627
Query: 626 TARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYLPLPEAAPAQAQADL 685
TAR L +RDA K RLVV+V+D+G+PP SAT TL V + D L P+ D
Sbjct: 628 TARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSIPDVLADLGSLKPSADPDDS 687
Query: 686 -LTVYLVVALASVSSLFLFSVLLFVAVRLCR--RSR---AASVGRCSVPEGPFPGQMVDV 739
LT+YLVVA+A+VS +FL V + +A++L R +SR A VP F G V
Sbjct: 688 GLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKSRLLHAEGSRLAGVPASHFVG----V 743
Query: 740 SGTGTLSQSYQYEVCLTGGSGTNEFKFLKP 769
G Q+Y +EV LT S + F +P
Sbjct: 744 DGVRAFLQTYSHEVSLTADSRKSHLIFSQP 773
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,311,552
Number of Sequences: 37866
Number of extensions: 1395597
Number of successful extensions: 10009
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2989
Number of HSP's gapped (non-prelim): 687
length of query: 796
length of database: 18,247,518
effective HSP length: 110
effective length of query: 686
effective length of database: 14,082,258
effective search space: 9660428988
effective search space used: 9660428988
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.