Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 92110025
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|92110025 PQ loop repeat containing 2 isoform 1 [Homo
sapiens]
(291 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|92110021 PQ loop repeat containing 2 isoform 1 [Homo sapiens] 579 e-165
gi|92110025 PQ loop repeat containing 2 isoform 1 [Homo sapiens] 579 e-165
gi|92110023 PQ loop repeat containing 2 isoform 2 [Homo sapiens] 441 e-124
gi|194018508 hypothetical protein LOC152078 isoform 1 [Homo sapi... 68 8e-12
gi|153791811 hypothetical protein LOC152078 isoform 3 [Homo sapi... 68 8e-12
gi|58533182 transmembrane protein 44 isoform b [Homo sapiens] 53 3e-07
gi|38679902 transmembrane protein 44 isoform a [Homo sapiens] 53 3e-07
gi|194018506 hypothetical protein LOC152078 isoform 2 [Homo sapi... 49 7e-06
gi|119943110 cystinosis, nephropathic isoform 2 [Homo sapiens] 34 0.13
gi|119943118 cystinosis, nephropathic isoform 1 [Homo sapiens] 34 0.13
gi|45505167 immunoglobulin superfamily, member 1 isoform 1 [Homo... 29 4.3
gi|22027651 adaptor-related protein complex 1 beta 1 subunit iso... 29 4.3
gi|22027653 adaptor-related protein complex 1 beta 1 subunit iso... 29 4.3
gi|222831620 interleukin 18 binding protein isoform a precursor ... 29 5.6
gi|89111129 interleukin 18 binding protein isoform a precursor [... 29 5.6
gi|89111125 interleukin 18 binding protein isoform a precursor [... 29 5.6
gi|89111127 interleukin 18 binding protein isoform a precursor [... 29 5.6
gi|13491166 pumilio 1 isoform 2 [Homo sapiens] 28 9.5
gi|66932909 pumilio 1 isoform 1 [Homo sapiens] 28 9.5
>gi|92110021 PQ loop repeat containing 2 isoform 1 [Homo sapiens]
Length = 291
Score = 579 bits (1492), Expect = e-165
Identities = 291/291 (100%), Positives = 291/291 (100%)
Query: 1 MVWKKLGSRNFSSCPSGSIQWIWDVLGECAQDGWDEASVGLGLISILCFAASTFPQFIKA 60
MVWKKLGSRNFSSCPSGSIQWIWDVLGECAQDGWDEASVGLGLISILCFAASTFPQFIKA
Sbjct: 1 MVWKKLGSRNFSSCPSGSIQWIWDVLGECAQDGWDEASVGLGLISILCFAASTFPQFIKA 60
Query: 61 YKTGNMDQALSLWFLLGWIGGDSCNLIGSFLADQLPLQTYTAVYYVLADLVMLTLYFYYK 120
YKTGNMDQALSLWFLLGWIGGDSCNLIGSFLADQLPLQTYTAVYYVLADLVMLTLYFYYK
Sbjct: 61 YKTGNMDQALSLWFLLGWIGGDSCNLIGSFLADQLPLQTYTAVYYVLADLVMLTLYFYYK 120
Query: 121 FRTRPSLLSAPINSVLLFLMGMACATPLLSAAGPVAAPREAFRGRALLSVESGSKPFTRQ 180
FRTRPSLLSAPINSVLLFLMGMACATPLLSAAGPVAAPREAFRGRALLSVESGSKPFTRQ
Sbjct: 121 FRTRPSLLSAPINSVLLFLMGMACATPLLSAAGPVAAPREAFRGRALLSVESGSKPFTRQ 180
Query: 181 EVIGFVIGSISSVLYLLSRLPQIRTNFLRKSTQGISYSLFALVMLGNTLYGLSVLLKNPE 240
EVIGFVIGSISSVLYLLSRLPQIRTNFLRKSTQGISYSLFALVMLGNTLYGLSVLLKNPE
Sbjct: 181 EVIGFVIGSISSVLYLLSRLPQIRTNFLRKSTQGISYSLFALVMLGNTLYGLSVLLKNPE 240
Query: 241 EGQSEGSYLLHHLPWLVGSLGVLLLDTIISIQFLVYRRSTAASELEPLLPS 291
EGQSEGSYLLHHLPWLVGSLGVLLLDTIISIQFLVYRRSTAASELEPLLPS
Sbjct: 241 EGQSEGSYLLHHLPWLVGSLGVLLLDTIISIQFLVYRRSTAASELEPLLPS 291
>gi|92110025 PQ loop repeat containing 2 isoform 1 [Homo sapiens]
Length = 291
Score = 579 bits (1492), Expect = e-165
Identities = 291/291 (100%), Positives = 291/291 (100%)
Query: 1 MVWKKLGSRNFSSCPSGSIQWIWDVLGECAQDGWDEASVGLGLISILCFAASTFPQFIKA 60
MVWKKLGSRNFSSCPSGSIQWIWDVLGECAQDGWDEASVGLGLISILCFAASTFPQFIKA
Sbjct: 1 MVWKKLGSRNFSSCPSGSIQWIWDVLGECAQDGWDEASVGLGLISILCFAASTFPQFIKA 60
Query: 61 YKTGNMDQALSLWFLLGWIGGDSCNLIGSFLADQLPLQTYTAVYYVLADLVMLTLYFYYK 120
YKTGNMDQALSLWFLLGWIGGDSCNLIGSFLADQLPLQTYTAVYYVLADLVMLTLYFYYK
Sbjct: 61 YKTGNMDQALSLWFLLGWIGGDSCNLIGSFLADQLPLQTYTAVYYVLADLVMLTLYFYYK 120
Query: 121 FRTRPSLLSAPINSVLLFLMGMACATPLLSAAGPVAAPREAFRGRALLSVESGSKPFTRQ 180
FRTRPSLLSAPINSVLLFLMGMACATPLLSAAGPVAAPREAFRGRALLSVESGSKPFTRQ
Sbjct: 121 FRTRPSLLSAPINSVLLFLMGMACATPLLSAAGPVAAPREAFRGRALLSVESGSKPFTRQ 180
Query: 181 EVIGFVIGSISSVLYLLSRLPQIRTNFLRKSTQGISYSLFALVMLGNTLYGLSVLLKNPE 240
EVIGFVIGSISSVLYLLSRLPQIRTNFLRKSTQGISYSLFALVMLGNTLYGLSVLLKNPE
Sbjct: 181 EVIGFVIGSISSVLYLLSRLPQIRTNFLRKSTQGISYSLFALVMLGNTLYGLSVLLKNPE 240
Query: 241 EGQSEGSYLLHHLPWLVGSLGVLLLDTIISIQFLVYRRSTAASELEPLLPS 291
EGQSEGSYLLHHLPWLVGSLGVLLLDTIISIQFLVYRRSTAASELEPLLPS
Sbjct: 241 EGQSEGSYLLHHLPWLVGSLGVLLLDTIISIQFLVYRRSTAASELEPLLPS 291
>gi|92110023 PQ loop repeat containing 2 isoform 2 [Homo sapiens]
Length = 226
Score = 441 bits (1135), Expect = e-124
Identities = 226/226 (100%), Positives = 226/226 (100%)
Query: 66 MDQALSLWFLLGWIGGDSCNLIGSFLADQLPLQTYTAVYYVLADLVMLTLYFYYKFRTRP 125
MDQALSLWFLLGWIGGDSCNLIGSFLADQLPLQTYTAVYYVLADLVMLTLYFYYKFRTRP
Sbjct: 1 MDQALSLWFLLGWIGGDSCNLIGSFLADQLPLQTYTAVYYVLADLVMLTLYFYYKFRTRP 60
Query: 126 SLLSAPINSVLLFLMGMACATPLLSAAGPVAAPREAFRGRALLSVESGSKPFTRQEVIGF 185
SLLSAPINSVLLFLMGMACATPLLSAAGPVAAPREAFRGRALLSVESGSKPFTRQEVIGF
Sbjct: 61 SLLSAPINSVLLFLMGMACATPLLSAAGPVAAPREAFRGRALLSVESGSKPFTRQEVIGF 120
Query: 186 VIGSISSVLYLLSRLPQIRTNFLRKSTQGISYSLFALVMLGNTLYGLSVLLKNPEEGQSE 245
VIGSISSVLYLLSRLPQIRTNFLRKSTQGISYSLFALVMLGNTLYGLSVLLKNPEEGQSE
Sbjct: 121 VIGSISSVLYLLSRLPQIRTNFLRKSTQGISYSLFALVMLGNTLYGLSVLLKNPEEGQSE 180
Query: 246 GSYLLHHLPWLVGSLGVLLLDTIISIQFLVYRRSTAASELEPLLPS 291
GSYLLHHLPWLVGSLGVLLLDTIISIQFLVYRRSTAASELEPLLPS
Sbjct: 181 GSYLLHHLPWLVGSLGVLLLDTIISIQFLVYRRSTAASELEPLLPS 226
>gi|194018508 hypothetical protein LOC152078 isoform 1 [Homo
sapiens]
Length = 135
Score = 68.2 bits (165), Expect = 8e-12
Identities = 36/98 (36%), Positives = 56/98 (57%), Gaps = 9/98 (9%)
Query: 56 QFIKAYKTGNMDQALSLWFLLGWIGGDSCNLIGSFLADQLPLQTYTAVYYVLADLVMLTL 115
Q AY+ G +D+A+SL FL WIGGD N G +L +QLP+Q +TA++ + D+++L+
Sbjct: 29 QLFVAYRNGRVDEAVSLGFLDCWIGGDLTNFKGCYLTNQLPIQIFTAIFDMNTDVIILSQ 88
Query: 116 YFYYKFRT-------RPSLLSAPI--NSVLLFLMGMAC 144
+ YY+ + +P L I V L L G+ C
Sbjct: 89 FMYYRLKNQKKKMIFQPQLFKDSITREKVRLSLWGVLC 126
>gi|153791811 hypothetical protein LOC152078 isoform 3 [Homo
sapiens]
Length = 118
Score = 68.2 bits (165), Expect = 8e-12
Identities = 29/74 (39%), Positives = 49/74 (66%)
Query: 56 QFIKAYKTGNMDQALSLWFLLGWIGGDSCNLIGSFLADQLPLQTYTAVYYVLADLVMLTL 115
Q AY+ G +D+A+SL FL WIGGD N G +L +QLP+Q +TA++ + D+++L+
Sbjct: 29 QLFVAYRNGRVDEAVSLGFLDCWIGGDLTNFKGCYLTNQLPIQIFTAIFDMNTDVIILSQ 88
Query: 116 YFYYKFRTRPSLLS 129
+ YY+ + + +S
Sbjct: 89 FMYYRLKNQKKKIS 102
>gi|58533182 transmembrane protein 44 isoform b [Homo sapiens]
Length = 428
Score = 53.1 bits (126), Expect = 3e-07
Identities = 67/263 (25%), Positives = 105/263 (39%), Gaps = 26/263 (9%)
Query: 21 WIWDVLGECAQDGWDEASVGLGLISILCF-AASTFPQFIKAYKTGNMDQAL--SLWFLLG 77
W WD L C S GL + + C+ AA +++ + DQ+ + LL
Sbjct: 12 WDWDYLDRCFARHRVCISFGLWICASSCWIAAHALLLYLRCAQKPRQDQSALCAACCLLT 71
Query: 78 WIGGDSCNLIGSFLADQLPLQTYTAVYYVLADLVMLTLYFY----YKFRTRPSLLSAPIN 133
+ C+ +G+ LA QL +Q +T Y DLV + KF++ S A
Sbjct: 72 SL----CDTVGALLARQLTIQVFTGAYLAAIDLVNFMFILFPVCGSKFKSN-SDREARER 126
Query: 134 SVLLFLMGMACATPLLSAAGP-----VAAPREAFRGRALLSVESGSKPFTRQEVIGFVIG 188
L A L + GP VA P+ + R S E++G+++G
Sbjct: 127 KRRRQLRASVFALALPLSLGPCWALWVAVPKASATIRGPQRRLLASLLQENTEILGYLLG 186
Query: 189 SISSVLYLLSRLPQIRTNFLRKSTQGISYSLFALVMLGNTLYGLSVLL--KNPEEGQSEG 246
S+++ SR+P + K+ I L L LY +++ ++PE
Sbjct: 187 SVAAFGSWASRIPPLSRICRGKTFPSIHLWTRLLSALAGLLYASAIVAHDQHPE------ 240
Query: 247 SYLLHHLPWLVGSLGVLLLDTII 269
YLL PW + SLG LD I
Sbjct: 241 -YLLRATPWFLTSLGRAALDLAI 262
>gi|38679902 transmembrane protein 44 isoform a [Homo sapiens]
Length = 439
Score = 53.1 bits (126), Expect = 3e-07
Identities = 67/263 (25%), Positives = 105/263 (39%), Gaps = 26/263 (9%)
Query: 21 WIWDVLGECAQDGWDEASVGLGLISILCF-AASTFPQFIKAYKTGNMDQAL--SLWFLLG 77
W WD L C S GL + + C+ AA +++ + DQ+ + LL
Sbjct: 12 WDWDYLDRCFARHRVCISFGLWICASSCWIAAHALLLYLRCAQKPRQDQSALCAACCLLT 71
Query: 78 WIGGDSCNLIGSFLADQLPLQTYTAVYYVLADLVMLTLYFY----YKFRTRPSLLSAPIN 133
+ C+ +G+ LA QL +Q +T Y DLV + KF++ S A
Sbjct: 72 SL----CDTVGALLARQLTIQVFTGAYLAAIDLVNFMFILFPVCGSKFKSN-SDREARER 126
Query: 134 SVLLFLMGMACATPLLSAAGP-----VAAPREAFRGRALLSVESGSKPFTRQEVIGFVIG 188
L A L + GP VA P+ + R S E++G+++G
Sbjct: 127 KRRRQLRASVFALALPLSLGPCWALWVAVPKASATIRGPQRRLLASLLQENTEILGYLLG 186
Query: 189 SISSVLYLLSRLPQIRTNFLRKSTQGISYSLFALVMLGNTLYGLSVLL--KNPEEGQSEG 246
S+++ SR+P + K+ I L L LY +++ ++PE
Sbjct: 187 SVAAFGSWASRIPPLSRICRGKTFPSIHLWTRLLSALAGLLYASAIVAHDQHPE------ 240
Query: 247 SYLLHHLPWLVGSLGVLLLDTII 269
YLL PW + SLG LD I
Sbjct: 241 -YLLRATPWFLTSLGRAALDLAI 262
>gi|194018506 hypothetical protein LOC152078 isoform 2 [Homo
sapiens]
Length = 133
Score = 48.5 bits (114), Expect = 7e-06
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 56 QFIKAYKTGNMDQALSLWFLLGWIGGDSCNLIGSFLADQLPLQ 98
Q AY+ G +D+A+SL FL WIGGD N G +L +QLP+Q
Sbjct: 29 QLFVAYRNGRVDEAVSLGFLDCWIGGDLTNFKGCYLTNQLPIQ 71
>gi|119943110 cystinosis, nephropathic isoform 2 [Homo sapiens]
Length = 367
Score = 34.3 bits (77), Expect = 0.13
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 182 VIGFVIGSISSVLYLLSRLPQIRTNFLRKSTQGISYSLFALVMLGNTLYGL 232
+I VIG I V + +S PQ+ N+ RKS G+S+ AL + G Y +
Sbjct: 125 IINQVIGWIYFVAWSISFYPQVIMNWRRKSVIGLSFDFVALNLTGFVAYSV 175
Score = 28.1 bits (61), Expect = 9.5
Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 7/104 (6%)
Query: 185 FVIGSISSVLYLLSRLPQIRTNFLRKSTQGISYSLFALVMLGNTLYGLSVLLKNPEEGQS 244
F I + L+ PQ NF KST+G S L G + L + L++ Q
Sbjct: 267 FCFSYIKLAVTLVKYFPQAYMNFYYKSTEGWSIGNVLLDFTGGSFSLLQMFLQSYNNDQW 326
Query: 245 EGSYLLHHLPWLVGSLGV--LLLDTIISIQ-FLVYRRSTAASEL 285
L+ P G LGV ++ D + IQ F +YR+ +L
Sbjct: 327 T---LIFGDPTKFG-LGVFSIVFDVVFFIQHFCLYRKRPGYDQL 366
>gi|119943118 cystinosis, nephropathic isoform 1 [Homo sapiens]
Length = 400
Score = 34.3 bits (77), Expect = 0.13
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 182 VIGFVIGSISSVLYLLSRLPQIRTNFLRKSTQGISYSLFALVMLGNTLYGL 232
+I VIG I V + +S PQ+ N+ RKS G+S+ AL + G Y +
Sbjct: 125 IINQVIGWIYFVAWSISFYPQVIMNWRRKSVIGLSFDFVALNLTGFVAYSV 175
>gi|45505167 immunoglobulin superfamily, member 1 isoform 1 [Homo
sapiens]
Length = 1336
Score = 29.3 bits (64), Expect = 4.3
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 125 PSLLSAPINSVLLFLMGMACATPLLSAAGPVAAPREAFRGR----------ALLSVESGS 174
P+L S P N + L + G+ L + GP+ AP E+ R AL+ VE
Sbjct: 207 PTLWSEPSNPLKLVVAGLYPKPTLTAHPGPIMAPGESLNLRCQGPIYGMTFALMRVEDLE 266
Query: 175 KPFTRQEVI 183
K F ++ I
Sbjct: 267 KSFYHKKTI 275
>gi|22027651 adaptor-related protein complex 1 beta 1 subunit
isoform a [Homo sapiens]
Length = 949
Score = 29.3 bits (64), Expect = 4.3
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 125 PSLLSAPINSVLLFLMGMACATPLLSAAGPVAAPREAFRGRALLSVESGSKPFTRQEVIG 184
P+ L API S L L + LS G AP+ + S FTRQ
Sbjct: 688 PANLGAPIGSGLSDLFDLTSGVGTLS--GSYVAPKAVWLPAMKAKGLEISGTFTRQ---- 741
Query: 185 FVIGSISSVLYLLSRLPQIRTNF 207
+GSIS L L ++ Q+ T+F
Sbjct: 742 --VGSISMDLQLTNKALQVMTDF 762
>gi|22027653 adaptor-related protein complex 1 beta 1 subunit
isoform b [Homo sapiens]
Length = 942
Score = 29.3 bits (64), Expect = 4.3
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 125 PSLLSAPINSVLLFLMGMACATPLLSAAGPVAAPREAFRGRALLSVESGSKPFTRQEVIG 184
P+ L API S L L + LS G AP+ + S FTRQ
Sbjct: 681 PANLGAPIGSGLSDLFDLTSGVGTLS--GSYVAPKAVWLPAMKAKGLEISGTFTRQ---- 734
Query: 185 FVIGSISSVLYLLSRLPQIRTNF 207
+GSIS L L ++ Q+ T+F
Sbjct: 735 --VGSISMDLQLTNKALQVMTDF 755
>gi|222831620 interleukin 18 binding protein isoform a precursor
[Homo sapiens]
Length = 194
Score = 28.9 bits (63), Expect = 5.6
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 34 WDEASVGL-GLISILCFAASTFPQFIKAYKTGN 65
W E V L G +S+ C A S FP F Y GN
Sbjct: 71 WPEVEVPLNGTLSLSCVACSRFPNFSILYWLGN 103
>gi|89111129 interleukin 18 binding protein isoform a precursor
[Homo sapiens]
Length = 194
Score = 28.9 bits (63), Expect = 5.6
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 34 WDEASVGL-GLISILCFAASTFPQFIKAYKTGN 65
W E V L G +S+ C A S FP F Y GN
Sbjct: 71 WPEVEVPLNGTLSLSCVACSRFPNFSILYWLGN 103
>gi|89111125 interleukin 18 binding protein isoform a precursor
[Homo sapiens]
Length = 194
Score = 28.9 bits (63), Expect = 5.6
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 34 WDEASVGL-GLISILCFAASTFPQFIKAYKTGN 65
W E V L G +S+ C A S FP F Y GN
Sbjct: 71 WPEVEVPLNGTLSLSCVACSRFPNFSILYWLGN 103
>gi|89111127 interleukin 18 binding protein isoform a precursor
[Homo sapiens]
Length = 194
Score = 28.9 bits (63), Expect = 5.6
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 34 WDEASVGL-GLISILCFAASTFPQFIKAYKTGN 65
W E V L G +S+ C A S FP F Y GN
Sbjct: 71 WPEVEVPLNGTLSLSCVACSRFPNFSILYWLGN 103
>gi|13491166 pumilio 1 isoform 2 [Homo sapiens]
Length = 1186
Score = 28.1 bits (61), Expect = 9.5
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 122 RTRPSLLSAPINSVLLFLMGMACATPLLSAAGPVAAPREAFRGRALLSVESGSK 175
+T P + +A +NS L F G+A P PV AP + L V +G++
Sbjct: 523 QTDPLVAAAAVNSALAFGQGLAAGMP----GYPVLAPAAYYDQTGALVVNAGAR 572
>gi|66932909 pumilio 1 isoform 1 [Homo sapiens]
Length = 1188
Score = 28.1 bits (61), Expect = 9.5
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 122 RTRPSLLSAPINSVLLFLMGMACATPLLSAAGPVAAPREAFRGRALLSVESGSK 175
+T P + +A +NS L F G+A P PV AP + L V +G++
Sbjct: 523 QTDPLVAAAAVNSALAFGQGLAAGMP----GYPVLAPAAYYDQTGALVVNAGAR 572
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.139 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,455,472
Number of Sequences: 37866
Number of extensions: 426119
Number of successful extensions: 1003
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 990
Number of HSP's gapped (non-prelim): 22
length of query: 291
length of database: 18,247,518
effective HSP length: 101
effective length of query: 190
effective length of database: 14,423,052
effective search space: 2740379880
effective search space used: 2740379880
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.