CTNS 2388

Name: CTNS	Sequence: fasta or formatted (400aa)		NCBI GI: 119943118
Description: cystinosis, nephropathic isoform 1		Referenced in: Lysosomes and Related Organelles
Other entries for this name: alt prot [367aa] cystinosis, nephropathic isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.5 18 2 C cysteine 1.2 5 2 D aspartate 2.0 8 1 E glutamate 2.2 9 1 F phenylalanine 8.2 33 2 G glycine 6.2 25 2 H histidine 1.0 4 1 I isoleucine 7.2 29 3 K lysine 3.5 14 1 L leucine 11.5 46 2 M methionine 1.2 5 1 N asparagine 5.2 21 2 P proline 5.0 20 2 Q glutamine 4.8 19 1 R arginine 3.8 15 2 S serine 9.0 36 2 T threonine 6.2 25 2 V valine 10.8 43 3 W tryptophan 2.8 11 1 Y tyrosine 3.5 14 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 cystinosis, nephropathic isoform 1 CTNS 0.907 cystinosis, nephropathic isoform 2 PQLC1 0.012 PQ loop repeat containing 1 isoform 3 PQLC2 0.012 PQ loop repeat containing 2 isoform 1 PQLC2 0.012 PQ loop repeat containing 2 isoform 1 PQLC2 0.012 PQ loop repeat containing 2 isoform 2 PQLC1 0.012 PQ loop repeat containing 1 isoform 1 EPHA2 0.010 ephrin receptor EphA2 BAI3 0.010 brain-specific angiogenesis inhibitor 3 SELI 0.008 selenoprotein I TXNL1 0.006 thioredoxin-like 1 PCDHGB3 0.006 protocadherin gamma subfamily B, 3 isoform 2 precurs... PCDHGB3 0.006 protocadherin gamma subfamily B, 3 isoform 1 precurs... PTPRQ 0.005 protein tyrosine phosphatase, receptor type, Q [Hom... SLC6A20 0.005 solute carrier family 6, member 20 isoform 1 TTC28 0.005 tetratricopeptide repeat domain 28 LOC100287119 0.005 PREDICTED: hypothetical protein XP_002342305 TRPV4 0.005 transient receptor potential cation channel, subfami... TRPV4 0.005 transient receptor potential cation channel, subfami... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.