Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 90903238
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|90903238 glutathione peroxidase 4 isoform B precursor [Homo
sapiens]
(227 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|90903238 glutathione peroxidase 4 isoform B precursor [Homo s... 479 e-136
gi|75709200 glutathione peroxidase 4 isoform A precursor [Homo s... 355 2e-98
gi|90903240 glutathione peroxidase 4 isoform C precursor [Homo s... 300 7e-82
gi|15618997 glutathione peroxidase 7 [Homo sapiens] 108 5e-24
gi|192455698 glutathione peroxidase 8 [Homo sapiens] 94 7e-20
gi|41406084 glutathione peroxidase 1 isoform 1 [Homo sapiens] 89 4e-18
gi|32967607 glutathione peroxidase 2 [Homo sapiens] 82 4e-16
gi|6006001 glutathione peroxidase 3 precursor [Homo sapiens] 77 9e-15
gi|33186887 glutathione peroxidase 6 [Homo sapiens] 67 1e-11
gi|4557629 glutathione peroxidase 5 isoform 1 precursor [Homo sa... 67 2e-11
gi|41406082 glutathione peroxidase 1 isoform 2 [Homo sapiens] 62 4e-10
gi|195539337 S-adenosylhomocysteine hydrolase-like 2 isoform b [... 28 4.9
gi|24308043 S-adenosylhomocysteine hydrolase-like 2 isoform a [H... 28 4.9
gi|169210434 PREDICTED: hypothetical protein [Homo sapiens] 28 6.4
gi|34452173 integrin alpha X precursor [Homo sapiens] 28 6.4
gi|194018443 potassium channel tetramerisation domain containing... 28 6.4
gi|194018441 potassium channel tetramerisation domain containing... 28 6.4
gi|194018439 potassium channel tetramerisation domain containing... 28 6.4
gi|16945972 kelch domain containing 3 [Homo sapiens] 28 6.4
gi|66472382 nischarin [Homo sapiens] 28 8.4
>gi|90903238 glutathione peroxidase 4 isoform B precursor [Homo
sapiens]
Length = 227
Score = 479 bits (1233), Expect = e-136
Identities = 227/227 (100%), Positives = 227/227 (100%)
Query: 1 MSLGRLCRLLKPALLCGALAAPGLAGTMCASRDDWRCARSMHEFSAKDIDGHMVNLDKYR 60
MSLGRLCRLLKPALLCGALAAPGLAGTMCASRDDWRCARSMHEFSAKDIDGHMVNLDKYR
Sbjct: 1 MSLGRLCRLLKPALLCGALAAPGLAGTMCASRDDWRCARSMHEFSAKDIDGHMVNLDKYR 60
Query: 61 GFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA 120
GFVCIVTNVASQ GKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA
Sbjct: 61 GFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA 120
Query: 121 AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFGHRLSTVPHRQE 180
AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFGHRLSTVPHRQE
Sbjct: 121 AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFGHRLSTVPHRQE 180
Query: 181 RLRGEALRTHGGAPGDREGPAPLFLAPQVCGPARAPAHALGAFHRHS 227
RLRGEALRTHGGAPGDREGPAPLFLAPQVCGPARAPAHALGAFHRHS
Sbjct: 181 RLRGEALRTHGGAPGDREGPAPLFLAPQVCGPARAPAHALGAFHRHS 227
>gi|75709200 glutathione peroxidase 4 isoform A precursor [Homo
sapiens]
Length = 197
Score = 355 bits (910), Expect = 2e-98
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 1 MSLGRLCRLLKPALLCGALAAPGLAGTMCASRDDWRCARSMHEFSAKDIDGHMVNLDKYR 60
MSLGRLCRLLKPALLCGALAAPGLAGTMCASRDDWRCARSMHEFSAKDIDGHMVNLDKYR
Sbjct: 1 MSLGRLCRLLKPALLCGALAAPGLAGTMCASRDDWRCARSMHEFSAKDIDGHMVNLDKYR 60
Query: 61 GFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA 120
GFVCIVTNVASQ GKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA
Sbjct: 61 GFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA 120
Query: 121 AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKF 168
AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKF
Sbjct: 121 AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKF 168
>gi|90903240 glutathione peroxidase 4 isoform C precursor [Homo
sapiens]
Length = 234
Score = 300 bits (768), Expect = 7e-82
Identities = 140/140 (100%), Positives = 140/140 (100%)
Query: 29 CASRDDWRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHA 88
CASRDDWRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQ GKTEVNYTQLVDLHA
Sbjct: 66 CASRDDWRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHA 125
Query: 89 RYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMK 148
RYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMK
Sbjct: 126 RYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMK 185
Query: 149 IQPKGKGILGNAIKWNFTKF 168
IQPKGKGILGNAIKWNFTKF
Sbjct: 186 IQPKGKGILGNAIKWNFTKF 205
>gi|15618997 glutathione peroxidase 7 [Homo sapiens]
Length = 187
Score = 108 bits (269), Expect = 5e-24
Identities = 60/131 (45%), Positives = 80/131 (61%), Gaps = 7/131 (5%)
Query: 39 RSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRIL 98
+ ++F A +I G +V+L+KYRG V +V NVAS+ G T+ +Y L L +L
Sbjct: 23 QDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVL 82
Query: 99 AFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGIL 157
AFPCNQFG+QEP SN+EI+ FA Y+V F MFSKI V G AHP +K++ Q GK
Sbjct: 83 AFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYL-AQTSGK--- 138
Query: 158 GNAIKWNFTKF 168
WNF K+
Sbjct: 139 --EPTWNFWKY 147
>gi|192455698 glutathione peroxidase 8 [Homo sapiens]
Length = 209
Score = 94.4 bits (233), Expect = 7e-20
Identities = 49/130 (37%), Positives = 73/130 (56%), Gaps = 7/130 (5%)
Query: 40 SMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILA 99
S + F KD G V+L+KY+G V +V NVAS T+ NY L +LH + +LA
Sbjct: 46 SFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLA 105
Query: 100 FPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG 158
FPCNQFG+ EP ++E++ FA Y V F +F KI + G + P ++++ K +
Sbjct: 106 FPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSSKKEP--- 162
Query: 159 NAIKWNFTKF 168
+WNF K+
Sbjct: 163 ---RWNFWKY 169
>gi|41406084 glutathione peroxidase 1 isoform 1 [Homo sapiens]
Length = 203
Score = 88.6 bits (218), Expect = 4e-18
Identities = 66/186 (35%), Positives = 90/186 (48%), Gaps = 26/186 (13%)
Query: 28 MCASR--DDWRCARSMHEFSAKDI-DGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLV 84
MCA+R A+S++ FSA+ + G V+L RG V ++ NVAS G T +YTQ+
Sbjct: 1 MCAARLAAAAAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMN 60
Query: 85 DLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEF------AAGYNVKFDMFSKICVNGD 138
+L R GL +L FPCNQFG QE NEEI G+ F +F K VNG
Sbjct: 61 ELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGA 120
Query: 139 DAHPLWKWMK--------------IQPK---GKGILGNAIKWNFTKFGHRLSTVPHRQER 181
AHPL+ +++ PK + N + WNF KF VP R+
Sbjct: 121 GAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYS 180
Query: 182 LRGEAL 187
R + +
Sbjct: 181 RRFQTI 186
>gi|32967607 glutathione peroxidase 2 [Homo sapiens]
Length = 190
Score = 82.0 bits (201), Expect = 4e-16
Identities = 53/154 (34%), Positives = 78/154 (50%), Gaps = 24/154 (15%)
Query: 38 ARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRI 97
A+S ++ SA +DG V+ + +RG ++ NVAS G T ++TQL +L R+ L +
Sbjct: 5 AKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPR-RLVV 63
Query: 98 LAFPCNQFGKQEPGSNEEIKEF------AAGYNVKFDMFSKICVNGDDAHPLWKWMK--- 148
L FPCNQFG QE NEEI GY F + K VNG + HP++ ++K
Sbjct: 64 LGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKL 123
Query: 149 ---------IQPKGKGILGNAIK-----WNFTKF 168
+ K I+ + ++ WNF KF
Sbjct: 124 PYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKF 157
>gi|6006001 glutathione peroxidase 3 precursor [Homo sapiens]
Length = 226
Score = 77.4 bits (189), Expect = 9e-15
Identities = 61/187 (32%), Positives = 86/187 (45%), Gaps = 25/187 (13%)
Query: 6 LCRLLKPALLCGALAAPGLAGTMCASRDDWRC----ARSMHEFSAKDIDGH-MVNLDKYR 60
+ RLL+ + L L A ++ + + C + +++E+ A IDG + +Y
Sbjct: 1 MARLLQASCLLSLLLAGFVSQSRGQEKSKMDCHGGISGTIYEYGALTIDGEEYIPFKQYA 60
Query: 61 GFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEF- 119
G + NVAS G T Y +L L A GL IL FPCNQFGKQEPG N EI
Sbjct: 61 GKYVLFVNVASYUGLTG-QYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTL 119
Query: 120 -----AAGYNVKFDMFSKICVNGDDAHPLWKWMKIQ-PKGKGILGNA------------I 161
G+ F +F K VNG+ + ++K P +LG + I
Sbjct: 120 KYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDI 179
Query: 162 KWNFTKF 168
+WNF KF
Sbjct: 180 RWNFEKF 186
>gi|33186887 glutathione peroxidase 6 [Homo sapiens]
Length = 221
Score = 67.4 bits (163), Expect = 1e-11
Identities = 47/149 (31%), Positives = 74/149 (49%), Gaps = 21/149 (14%)
Query: 40 SMHEFSAKDIDGH-MVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRIL 98
+++E+ A ++G + ++ G + NVA+ G Y +L L G+ +L
Sbjct: 39 TIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYUGLA-AQYPELNALQEELKNFGVIVL 97
Query: 99 AFPCNQFGKQEPGSNEEIKEF------AAGYNVKFDMFSKICVNGDDAHPLWKWMKIQ-P 151
AFPCNQFGKQEPG+N EI +G+ F +F K VNG+ ++ ++K P
Sbjct: 98 AFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCP 157
Query: 152 KGKGILGNA------------IKWNFTKF 168
+LG++ I+WNF KF
Sbjct: 158 PTSDLLGSSSQLFWEPMKVHDIRWNFEKF 186
>gi|4557629 glutathione peroxidase 5 isoform 1 precursor [Homo
sapiens]
Length = 221
Score = 66.6 bits (161), Expect = 2e-11
Identities = 47/134 (35%), Positives = 63/134 (47%), Gaps = 20/134 (14%)
Query: 54 VNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSN 113
V+ +Y G + NVA+ G T Y +L L GL +L FPCNQFGKQEPG N
Sbjct: 54 VSFKQYVGKHILFVNVATYCGLT-AQYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDN 112
Query: 114 EEI------KEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQ-PKGKGILG-------- 158
+EI G+ F +F K VNG+ ++ ++K P ILG
Sbjct: 113 KEILPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWD 172
Query: 159 ----NAIKWNFTKF 168
+ I+WNF KF
Sbjct: 173 PVKVHDIRWNFEKF 186
>gi|41406082 glutathione peroxidase 1 isoform 2 [Homo sapiens]
Length = 98
Score = 62.0 bits (149), Expect = 4e-10
Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 28 MCASR--DDWRCARSMHEFSAKDI-DGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLV 84
MCA+R A+S++ FSA+ + G V+L RG V ++ NVAS G T +YTQ+
Sbjct: 1 MCAARLAAAAAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMN 60
Query: 85 DLHARYAECGLRILAFPCNQFGKQ 108
+L R GL +L FPCNQFG Q
Sbjct: 61 ELQRRLGPRGLVVLGFPCNQFGHQ 84
>gi|195539337 S-adenosylhomocysteine hydrolase-like 2 isoform b
[Homo sapiens]
Length = 610
Score = 28.5 bits (62), Expect = 4.9
Identities = 14/26 (53%), Positives = 14/26 (53%)
Query: 195 GDREGPAPLFLAPQVCGPARAPAHAL 220
GD E PAP P V GP PA AL
Sbjct: 48 GDPEAPAPAAERPPVPGPGSGPAAAL 73
>gi|24308043 S-adenosylhomocysteine hydrolase-like 2 isoform a [Homo
sapiens]
Length = 611
Score = 28.5 bits (62), Expect = 4.9
Identities = 14/26 (53%), Positives = 14/26 (53%)
Query: 195 GDREGPAPLFLAPQVCGPARAPAHAL 220
GD E PAP P V GP PA AL
Sbjct: 48 GDPEAPAPAAERPPVPGPGSGPAAAL 73
>gi|169210434 PREDICTED: hypothetical protein [Homo sapiens]
Length = 301
Score = 28.1 bits (61), Expect = 6.4
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 188 RTHGGAPGD--REGPAPLFLAPQVCGPARAP 216
R G G+ R GPAP L P VC RAP
Sbjct: 107 RAQKGGKGEETRRGPAPAGLTPSVCLYGRAP 137
>gi|34452173 integrin alpha X precursor [Homo sapiens]
Length = 1163
Score = 28.1 bits (61), Expect = 6.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 192 GAPGDREGPAPLFLAPQVCGPARAPAHA 219
GAPG+ E ++L V GP+ +P+H+
Sbjct: 542 GAPGEEENRGAVYLFHGVLGPSISPSHS 569
>gi|194018443 potassium channel tetramerisation domain containing 15
isoform 2 [Homo sapiens]
Length = 283
Score = 28.1 bits (61), Expect = 6.4
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 175 VPHRQERLRGEALRTHGGAPGDREG 199
+PHR+ER G +L TH G+ G EG
Sbjct: 1 MPHRKERPSGSSLHTH-GSTGTAEG 24
>gi|194018441 potassium channel tetramerisation domain containing 15
isoform 2 [Homo sapiens]
Length = 283
Score = 28.1 bits (61), Expect = 6.4
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 175 VPHRQERLRGEALRTHGGAPGDREG 199
+PHR+ER G +L TH G+ G EG
Sbjct: 1 MPHRKERPSGSSLHTH-GSTGTAEG 24
>gi|194018439 potassium channel tetramerisation domain containing 15
isoform 1 [Homo sapiens]
Length = 234
Score = 28.1 bits (61), Expect = 6.4
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 175 VPHRQERLRGEALRTHGGAPGDREG 199
+PHR+ER G +L TH G+ G EG
Sbjct: 1 MPHRKERPSGSSLHTH-GSTGTAEG 24
>gi|16945972 kelch domain containing 3 [Homo sapiens]
Length = 382
Score = 28.1 bits (61), Expect = 6.4
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 17/52 (32%)
Query: 111 GSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWK-------WMKIQPKGKG 155
G N E+ F GYN + + H LWK W KI+PKGKG
Sbjct: 246 GYNGELYIFG-GYNARLNRHF---------HDLWKFNPVSFTWKKIEPKGKG 287
>gi|66472382 nischarin [Homo sapiens]
Length = 1504
Score = 27.7 bits (60), Expect = 8.4
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 171 RLSTVPHRQERLRGEALRTHGGAPGDREGPAPLFLAPQVCGPARAPAHA 219
R ++ R + + EAL AP E PAP A GPA+ PA A
Sbjct: 1035 RRASNDQRPQEVPAEAL-----APAPAEVPAPAPAAASASGPAKTPAPA 1078
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.139 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,959,284
Number of Sequences: 37866
Number of extensions: 461576
Number of successful extensions: 1015
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 994
Number of HSP's gapped (non-prelim): 21
length of query: 227
length of database: 18,247,518
effective HSP length: 99
effective length of query: 128
effective length of database: 14,498,784
effective search space: 1855844352
effective search space used: 1855844352
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.