Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 90855771
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|90855771 hypothetical protein LOC55744 [Homo sapiens]
(146 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|90855771 hypothetical protein LOC55744 [Homo sapiens] 299 5e-82
gi|109134327 PTD016 protein [Homo sapiens] 28 2.8
gi|20070163 voltage-dependent calcium channel alpha 1G subunit i... 27 6.2
gi|113430055 PREDICTED: similar to cancer/testis antigen family ... 27 6.2
gi|239746922 PREDICTED: similar to cancer/testis antigen family ... 27 6.2
gi|13654239 WW domain containing E3 ubiquitin protein ligase 1 [... 27 6.2
gi|38505294 voltage-dependent calcium channel alpha 1G subunit i... 27 6.2
gi|38505292 voltage-dependent calcium channel alpha 1G subunit i... 27 6.2
gi|38505290 voltage-dependent calcium channel alpha 1G subunit i... 27 6.2
gi|38505288 voltage-dependent calcium channel alpha 1G subunit i... 27 6.2
gi|38505286 voltage-dependent calcium channel alpha 1G subunit i... 27 6.2
gi|38505284 voltage-dependent calcium channel alpha 1G subunit i... 27 6.2
gi|38505282 voltage-dependent calcium channel alpha 1G subunit i... 27 6.2
gi|38505280 voltage-dependent calcium channel alpha 1G subunit i... 27 6.2
gi|38505278 voltage-dependent calcium channel alpha 1G subunit i... 27 6.2
gi|38505276 voltage-dependent calcium channel alpha 1G subunit i... 27 6.2
gi|38505274 voltage-dependent calcium channel alpha 1G subunit i... 27 6.2
gi|38505272 voltage-dependent calcium channel alpha 1G subunit i... 27 6.2
gi|38505270 voltage-dependent calcium channel alpha 1G subunit i... 27 6.2
gi|38505268 voltage-dependent calcium channel alpha 1G subunit i... 27 6.2
gi|148806894 hypothetical protein LOC26175 isoform 1 [Homo sapiens] 27 6.2
gi|148806869 hypothetical protein LOC26175 isoform 2 [Homo sapiens] 27 6.2
gi|239745972 PREDICTED: hypothetical protein XP_002343629 [Homo ... 27 8.0
>gi|90855771 hypothetical protein LOC55744 [Homo sapiens]
Length = 146
Score = 299 bits (766), Expect = 5e-82
Identities = 146/146 (100%), Positives = 146/146 (100%)
Query: 1 MMWQKYAGSRRSMPLGARILFHGVFYAGGFAIVYYLIQKFHSRALYYKLAVEQLQSHPEA 60
MMWQKYAGSRRSMPLGARILFHGVFYAGGFAIVYYLIQKFHSRALYYKLAVEQLQSHPEA
Sbjct: 1 MMWQKYAGSRRSMPLGARILFHGVFYAGGFAIVYYLIQKFHSRALYYKLAVEQLQSHPEA 60
Query: 61 QEALGPPLNIHYLKLIDRENFVDIVDAKLKIPVSGSKSEGLLYVHSSRGGPFQRWHLDEV 120
QEALGPPLNIHYLKLIDRENFVDIVDAKLKIPVSGSKSEGLLYVHSSRGGPFQRWHLDEV
Sbjct: 61 QEALGPPLNIHYLKLIDRENFVDIVDAKLKIPVSGSKSEGLLYVHSSRGGPFQRWHLDEV 120
Query: 121 FLELKDGQQIPVFKLSGENGDEVKKE 146
FLELKDGQQIPVFKLSGENGDEVKKE
Sbjct: 121 FLELKDGQQIPVFKLSGENGDEVKKE 146
>gi|109134327 PTD016 protein [Homo sapiens]
Length = 435
Score = 28.1 bits (61), Expect = 2.8
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 24 VFYAGGFAIVYYLIQKFHSRALYYKL 49
VF AG ++YY FHS++LYY L
Sbjct: 210 VFLAGSSVLLYYT---FHSQSLYYSL 232
>gi|20070163 voltage-dependent calcium channel alpha 1G subunit
isoform 1 [Homo sapiens]
Length = 2377
Score = 26.9 bits (58), Expect = 6.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 49 LAVEQLQSHPEAQEALGPPLNIH 71
LA+ L HPE +++L PPL IH
Sbjct: 1020 LALVSLGEHPELRKSLLPPLIIH 1042
>gi|113430055 PREDICTED: similar to cancer/testis antigen family
147, member B1 isoform 1 [Homo sapiens]
Length = 284
Score = 26.9 bits (58), Expect = 6.2
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 77 DRENFVDIVDAKLKIPVSGSKSEGLLYVHSSRGGPFQRWHLDEVFLELKDGQQIPVFKLS 136
+ +NF D+V A + P+ G + E L VHS + +H D + + ++ G+ + + +
Sbjct: 94 EADNF-DLVAAARRYPIRGFRMEFLDMVHSLL---LRIYHNDHILIRMRGGRLMRRRRTA 149
Query: 137 GENGDE 142
+G E
Sbjct: 150 APSGSE 155
>gi|239746922 PREDICTED: similar to cancer/testis antigen family
147, member B1 isoform 2 [Homo sapiens]
Length = 294
Score = 26.9 bits (58), Expect = 6.2
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 77 DRENFVDIVDAKLKIPVSGSKSEGLLYVHSSRGGPFQRWHLDEVFLELKDGQQIPVFKLS 136
+ +NF D+V A + P+ G + E L VHS + +H D + + ++ G+ + + +
Sbjct: 95 EADNF-DLVAAARRYPIRGFRMEFLDMVHSLL---LRIYHNDHILIRMRGGRLMRRRRTA 150
Query: 137 GENGDE 142
+G E
Sbjct: 151 APSGSE 156
>gi|13654239 WW domain containing E3 ubiquitin protein ligase 1
[Homo sapiens]
Length = 922
Score = 26.9 bits (58), Expect = 6.2
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 17 ARILFHGVFYAGGFAIVYYLIQKFHSRALYYKLAVEQLQS 56
A LFHG F GF++ +Y R L KL ++ L+S
Sbjct: 665 AMALFHGKFIDTGFSLPFY------KRMLSKKLTIKDLES 698
>gi|38505294 voltage-dependent calcium channel alpha 1G subunit
isoform 15 [Homo sapiens]
Length = 1555
Score = 26.9 bits (58), Expect = 6.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 49 LAVEQLQSHPEAQEALGPPLNIH 71
LA+ L HPE +++L PPL IH
Sbjct: 1020 LALVSLGEHPELRKSLLPPLIIH 1042
>gi|38505292 voltage-dependent calcium channel alpha 1G subunit
isoform 3 [Homo sapiens]
Length = 2343
Score = 26.9 bits (58), Expect = 6.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 49 LAVEQLQSHPEAQEALGPPLNIH 71
LA+ L HPE +++L PPL IH
Sbjct: 997 LALVSLGEHPELRKSLLPPLIIH 1019
>gi|38505290 voltage-dependent calcium channel alpha 1G subunit
isoform 13 [Homo sapiens]
Length = 2243
Score = 26.9 bits (58), Expect = 6.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 49 LAVEQLQSHPEAQEALGPPLNIH 71
LA+ L HPE +++L PPL IH
Sbjct: 997 LALVSLGEHPELRKSLLPPLIIH 1019
>gi|38505288 voltage-dependent calcium channel alpha 1G subunit
isoform 12 [Homo sapiens]
Length = 2250
Score = 26.9 bits (58), Expect = 6.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 49 LAVEQLQSHPEAQEALGPPLNIH 71
LA+ L HPE +++L PPL IH
Sbjct: 997 LALVSLGEHPELRKSLLPPLIIH 1019
>gi|38505286 voltage-dependent calcium channel alpha 1G subunit
isoform 10 [Homo sapiens]
Length = 2266
Score = 26.9 bits (58), Expect = 6.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 49 LAVEQLQSHPEAQEALGPPLNIH 71
LA+ L HPE +++L PPL IH
Sbjct: 1020 LALVSLGEHPELRKSLLPPLIIH 1042
>gi|38505284 voltage-dependent calcium channel alpha 1G subunit
isoform 4 [Homo sapiens]
Length = 2332
Score = 26.9 bits (58), Expect = 6.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 49 LAVEQLQSHPEAQEALGPPLNIH 71
LA+ L HPE +++L PPL IH
Sbjct: 1020 LALVSLGEHPELRKSLLPPLIIH 1042
>gi|38505282 voltage-dependent calcium channel alpha 1G subunit
isoform 8 [Homo sapiens]
Length = 2284
Score = 26.9 bits (58), Expect = 6.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 49 LAVEQLQSHPEAQEALGPPLNIH 71
LA+ L HPE +++L PPL IH
Sbjct: 1020 LALVSLGEHPELRKSLLPPLIIH 1042
>gi|38505280 voltage-dependent calcium channel alpha 1G subunit
isoform 6 [Homo sapiens]
Length = 2306
Score = 26.9 bits (58), Expect = 6.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 49 LAVEQLQSHPEAQEALGPPLNIH 71
LA+ L HPE +++L PPL IH
Sbjct: 997 LALVSLGEHPELRKSLLPPLIIH 1019
>gi|38505278 voltage-dependent calcium channel alpha 1G subunit
isoform 11 [Homo sapiens]
Length = 2261
Score = 26.9 bits (58), Expect = 6.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 49 LAVEQLQSHPEAQEALGPPLNIH 71
LA+ L HPE +++L PPL IH
Sbjct: 997 LALVSLGEHPELRKSLLPPLIIH 1019
>gi|38505276 voltage-dependent calcium channel alpha 1G subunit
isoform 5 [Homo sapiens]
Length = 2321
Score = 26.9 bits (58), Expect = 6.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 49 LAVEQLQSHPEAQEALGPPLNIH 71
LA+ L HPE +++L PPL IH
Sbjct: 1020 LALVSLGEHPELRKSLLPPLIIH 1042
>gi|38505274 voltage-dependent calcium channel alpha 1G subunit
isoform 7 [Homo sapiens]
Length = 2298
Score = 26.9 bits (58), Expect = 6.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 49 LAVEQLQSHPEAQEALGPPLNIH 71
LA+ L HPE +++L PPL IH
Sbjct: 997 LALVSLGEHPELRKSLLPPLIIH 1019
>gi|38505272 voltage-dependent calcium channel alpha 1G subunit
isoform 9 [Homo sapiens]
Length = 2273
Score = 26.9 bits (58), Expect = 6.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 49 LAVEQLQSHPEAQEALGPPLNIH 71
LA+ L HPE +++L PPL IH
Sbjct: 1020 LALVSLGEHPELRKSLLPPLIIH 1042
>gi|38505270 voltage-dependent calcium channel alpha 1G subunit
isoform 2 [Homo sapiens]
Length = 2354
Score = 26.9 bits (58), Expect = 6.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 49 LAVEQLQSHPEAQEALGPPLNIH 71
LA+ L HPE +++L PPL IH
Sbjct: 997 LALVSLGEHPELRKSLLPPLIIH 1019
>gi|38505268 voltage-dependent calcium channel alpha 1G subunit
isoform 14 [Homo sapiens]
Length = 2171
Score = 26.9 bits (58), Expect = 6.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 49 LAVEQLQSHPEAQEALGPPLNIH 71
LA+ L HPE +++L PPL IH
Sbjct: 997 LALVSLGEHPELRKSLLPPLIIH 1019
>gi|148806894 hypothetical protein LOC26175 isoform 1 [Homo
sapiens]
Length = 169
Score = 26.9 bits (58), Expect = 6.2
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 23 GVFYAGGFAIVYYLIQKFHSRALYYKLAVEQLQSHPE 59
G++ A YY+ F Y +LA+E +Q HPE
Sbjct: 52 GLYLLASAAAFYYV---FEISETYNRLALEHIQQHPE 85
>gi|148806869 hypothetical protein LOC26175 isoform 2 [Homo
sapiens]
Length = 131
Score = 26.9 bits (58), Expect = 6.2
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 23 GVFYAGGFAIVYYLIQKFHSRALYYKLAVEQLQSHPE 59
G++ A YY+ F Y +LA+E +Q HPE
Sbjct: 14 GLYLLASAAAFYYV---FEISETYNRLALEHIQQHPE 47
>gi|239745972 PREDICTED: hypothetical protein XP_002343629 [Homo
sapiens]
Length = 254
Score = 26.6 bits (57), Expect = 8.0
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 83 DIVDAKLK-IPVSGSKSEGLLYVHSSRGGPFQRWHLDEVFLELKDGQQIPVFKLSG 137
DI +A+ K + + E + +V + GG W EV+ + DG V KL G
Sbjct: 190 DISEARCKGLQALSLRKEFICWVREALGGKISLWGCVEVWRKFSDGALCGVPKLFG 245
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.140 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,966,175
Number of Sequences: 37866
Number of extensions: 252161
Number of successful extensions: 467
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 451
Number of HSP's gapped (non-prelim): 23
length of query: 146
length of database: 18,247,518
effective HSP length: 92
effective length of query: 54
effective length of database: 14,763,846
effective search space: 797247684
effective search space used: 797247684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.