Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: YIF1B Sequence: fasta or formatted (311aa) NCBI GI: 89191850
Description:

Yip1 interacting factor homolog B isoform 4

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt prot [297aa] Yip1 interacting factor homolog B isoform 6
alt prot [283aa] Yip1 interacting factor homolog B isoform 2
alt prot [291aa] Yip1 interacting factor homolog B isoform 7
alt prot [283aa] Yip1 interacting factor homolog B isoform 2
alt prot [299aa] Yip1 interacting factor homolog B isoform 3
alt prot [314aa] Yip1 interacting factor homolog B isoform 5
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.2         41           5
 C cysteine            0.6          2           2
 D aspartate           5.1         16           2
 E glutamate           1.3          4           1
 F phenylalanine       4.5         14           2
 G glycine             7.7         24           2
 H histidine           1.6          5           1
 I isoleucine          4.2         13           1
 K lysine              2.9          9           1
 L leucine            13.8         43           2
 M methionine          4.2         13           1
 N asparagine          1.6          5           1
 P proline             6.4         20           1
 Q glutamine           4.2         13           2
 R arginine            4.8         15           2
 S serine              4.5         14           2
 T threonine           5.1         16           2
 V valine              7.4         23           1
 W tryptophan          1.3          4           1
 Y tyrosine            5.5         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Yip1 interacting factor homolog B isoform 4 
YIF1B                 0.990   Yip1 interacting factor homolog B isoform 5 
YIF1B                 0.945   Yip1 interacting factor homolog B isoform 3 
YIF1B                 0.943   Yip1 interacting factor homolog B isoform 6 
YIF1B                 0.906   Yip1 interacting factor homolog B isoform 2 
YIF1B                 0.906   Yip1 interacting factor homolog B isoform 2 
YIF1B                 0.836   Yip1 interacting factor homolog B isoform 7 
YIF1A                 0.487   Yip1 interacting factor homolog 
LOC100127930          0.013   PREDICTED: hypothetical protein 
UBQLN4                0.012   ataxin-1 ubiquitin-like interacting protein 
TMEM132D              0.010   transmembrane protein 132D 
LOC731275             0.010   PREDICTED: similar to Putative uncharacterized prot...
DUSP8                 0.010   dual specificity phosphatase 8 
LOC100293867          0.008   PREDICTED: hypothetical protein 
LOC100131426          0.008   PREDICTED: hypothetical protein 
LOC100290553          0.008   PREDICTED: hypothetical protein XP_002347706 
LOC100131426          0.008   PREDICTED: hypothetical protein 
LOC100287282          0.008   PREDICTED: hypothetical protein XP_002344162 
LOC100131426          0.008   PREDICTED: hypothetical protein isoform 2 
LOC100131426          0.008   PREDICTED: hypothetical protein isoform 1 
EGR4                  0.008   early growth response 4 
GATA6                 0.008   GATA binding protein 6 
SLC9A4                0.008   solute carrier family 9 (sodium/hydrogen exchanger)...
CHERP                 0.008   calcium homeostasis endoplasmic reticulum protein [...
ROBO4                 0.008   roundabout homolog 4, magic roundabout 
ABI3                  0.008   NESH protein isoform 2 
ABI3                  0.008   NESH protein isoform 1 
TPRX1                 0.008   tetra-peptide repeat homeobox 
FOXB1                 0.008   forkhead box B1 
APLNR                 0.007   apelin receptor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press