Guide to the Human Genome
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Name: YIF1B Sequence: fasta or formatted (283aa) NCBI GI: 224451038
Description:

Yip1 interacting factor homolog B isoform 2

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt prot [297aa] Yip1 interacting factor homolog B isoform 6
alt prot [291aa] Yip1 interacting factor homolog B isoform 7
alt mRNA [283aa] Yip1 interacting factor homolog B isoform 2
alt prot [299aa] Yip1 interacting factor homolog B isoform 3
alt prot [314aa] Yip1 interacting factor homolog B isoform 5
alt prot [311aa] Yip1 interacting factor homolog B isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.4         35           3
 C cysteine            0.7          2           2
 D aspartate           5.7         16           2
 E glutamate           1.4          4           1
 F phenylalanine       4.9         14           2
 G glycine             7.4         21           2
 H histidine           1.4          4           1
 I isoleucine          4.2         12           1
 K lysine              2.8          8           1
 L leucine            14.5         41           2
 M methionine          4.2         12           1
 N asparagine          1.8          5           1
 P proline             5.3         15           1
 Q glutamine           4.2         12           2
 R arginine            4.2         12           1
 S serine              4.2         12           2
 T threonine           5.3         15           2
 V valine              7.8         22           1
 W tryptophan          1.4          4           1
 Y tyrosine            6.0         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Yip1 interacting factor homolog B isoform 2 
YIF1B                 1.000   Yip1 interacting factor homolog B isoform 6 
YIF1B                 1.000   Yip1 interacting factor homolog B isoform 2 
YIF1B                 1.000   Yip1 interacting factor homolog B isoform 3 
YIF1B                 1.000   Yip1 interacting factor homolog B isoform 4 
YIF1B                 1.000   Yip1 interacting factor homolog B isoform 5 
YIF1B                 0.820   Yip1 interacting factor homolog B isoform 7 
YIF1A                 0.537   Yip1 interacting factor homolog 
TMEM132D              0.011   transmembrane protein 132D 
SLC9A4                0.009   solute carrier family 9 (sodium/hydrogen exchanger)...
APLNR                 0.007   apelin receptor 
AURKB                 0.007   aurora kinase B 
SLC22A9               0.006   solute carrier family 22 (organic anion/cation trans...
SNX33                 0.006   sorting nexin 33 
GIPR                  0.006   gastric inhibitory polypeptide receptor 
PIGS                  0.006   phosphatidylinositol glycan anchor biosynthesis, cla...
TBX18                 0.006   T-box 18 
C19orf24              0.006   hypothetical protein LOC55009 
TMEM132A              0.006   transmembrane protein 132A isoform a 
TMEM132A              0.006   transmembrane protein 132A isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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