Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 88954747
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|88954747 PREDICTED: hypothetical protein isoform 7 [Homo
sapiens]
(127 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169163921 PREDICTED: hypothetical protein isoform 1 [Homo sap... 263 2e-71
gi|88954747 PREDICTED: hypothetical protein isoform 7 [Homo sapi... 263 2e-71
gi|41190403 PREDICTED: hypothetical protein isoform 1 [Homo sapi... 263 2e-71
gi|239753152 PREDICTED: hypothetical protein isoform 2 [Homo sap... 82 1e-16
gi|239747721 PREDICTED: hypothetical protein [Homo sapiens] 82 1e-16
gi|239741587 PREDICTED: hypothetical protein [Homo sapiens] 82 1e-16
gi|40255101 solute carrier family 39 (zinc transporter), member ... 34 0.027
gi|190014617 solute carrier family 39 (zinc transporter), member... 34 0.027
gi|239755001 PREDICTED: hypothetical protein [Homo sapiens] 30 0.65
gi|239749563 PREDICTED: hypothetical protein XP_002347087 [Homo ... 30 0.65
gi|154354974 phosphatase and actin regulator 2 isoform 3 [Homo s... 28 2.5
gi|154354968 phosphatase and actin regulator 2 isoform 1 [Homo s... 28 2.5
gi|58761506 sarcoma antigen NY-SAR-48 isoform b [Homo sapiens] 27 4.2
gi|58761504 sarcoma antigen NY-SAR-48 isoform a [Homo sapiens] 27 4.2
gi|197245440 hypothetical protein LOC23285 [Homo sapiens] 27 4.2
gi|11342676 thyroid hormone receptor interactor 10 [Homo sapiens] 27 4.2
gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo ... 27 5.5
gi|239748639 PREDICTED: hypothetical protein XP_002346752 [Homo ... 27 5.5
gi|157909822 pragmin [Homo sapiens] 27 5.5
gi|239756568 PREDICTED: similar to BCL2-associated transcription... 26 7.2
gi|169218320 PREDICTED: similar to BCL2-associated transcription... 26 7.2
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 26 9.4
gi|21361796 ELL associated factor 2 [Homo sapiens] 26 9.4
>gi|169163921 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 127
Score = 263 bits (673), Expect = 2e-71
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MSAQCTFLPLKVQEERGNPQVELTMRTVTALRGKSRNQPSSFLYQEDWRLQPWLCGASLA 60
MSAQCTFLPLKVQEERGNPQVELTMRTVTALRGKSRNQPSSFLYQEDWRLQPWLCGASLA
Sbjct: 1 MSAQCTFLPLKVQEERGNPQVELTMRTVTALRGKSRNQPSSFLYQEDWRLQPWLCGASLA 60
Query: 61 LSSDCPTWLQVRVRGSWRWKMQLGELTRQVSGNSLNKRTPDHACSSSPGATSTSLSMEQD 120
LSSDCPTWLQVRVRGSWRWKMQLGELTRQVSGNSLNKRTPDHACSSSPGATSTSLSMEQD
Sbjct: 61 LSSDCPTWLQVRVRGSWRWKMQLGELTRQVSGNSLNKRTPDHACSSSPGATSTSLSMEQD 120
Query: 121 FSSSSED 127
FSSSSED
Sbjct: 121 FSSSSED 127
>gi|88954747 PREDICTED: hypothetical protein isoform 7 [Homo
sapiens]
Length = 127
Score = 263 bits (673), Expect = 2e-71
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MSAQCTFLPLKVQEERGNPQVELTMRTVTALRGKSRNQPSSFLYQEDWRLQPWLCGASLA 60
MSAQCTFLPLKVQEERGNPQVELTMRTVTALRGKSRNQPSSFLYQEDWRLQPWLCGASLA
Sbjct: 1 MSAQCTFLPLKVQEERGNPQVELTMRTVTALRGKSRNQPSSFLYQEDWRLQPWLCGASLA 60
Query: 61 LSSDCPTWLQVRVRGSWRWKMQLGELTRQVSGNSLNKRTPDHACSSSPGATSTSLSMEQD 120
LSSDCPTWLQVRVRGSWRWKMQLGELTRQVSGNSLNKRTPDHACSSSPGATSTSLSMEQD
Sbjct: 61 LSSDCPTWLQVRVRGSWRWKMQLGELTRQVSGNSLNKRTPDHACSSSPGATSTSLSMEQD 120
Query: 121 FSSSSED 127
FSSSSED
Sbjct: 121 FSSSSED 127
>gi|41190403 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 127
Score = 263 bits (673), Expect = 2e-71
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MSAQCTFLPLKVQEERGNPQVELTMRTVTALRGKSRNQPSSFLYQEDWRLQPWLCGASLA 60
MSAQCTFLPLKVQEERGNPQVELTMRTVTALRGKSRNQPSSFLYQEDWRLQPWLCGASLA
Sbjct: 1 MSAQCTFLPLKVQEERGNPQVELTMRTVTALRGKSRNQPSSFLYQEDWRLQPWLCGASLA 60
Query: 61 LSSDCPTWLQVRVRGSWRWKMQLGELTRQVSGNSLNKRTPDHACSSSPGATSTSLSMEQD 120
LSSDCPTWLQVRVRGSWRWKMQLGELTRQVSGNSLNKRTPDHACSSSPGATSTSLSMEQD
Sbjct: 61 LSSDCPTWLQVRVRGSWRWKMQLGELTRQVSGNSLNKRTPDHACSSSPGATSTSLSMEQD 120
Query: 121 FSSSSED 127
FSSSSED
Sbjct: 121 FSSSSED 127
>gi|239753152 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 65
Score = 81.6 bits (200), Expect = 1e-16
Identities = 45/67 (67%), Positives = 53/67 (79%), Gaps = 2/67 (2%)
Query: 61 LSSDCPTWLQVRVRGSWRWKMQLGELTRQVSGNSLNKRTPDHACSSSPGATSTSLSMEQD 120
+S+ C T+L ++V+ R Q+ R V+GNSLNKRTPDHACSSSPGATSTSLSMEQD
Sbjct: 1 MSAQC-TFLPLKVQEE-RGNPQVELTMRTVTGNSLNKRTPDHACSSSPGATSTSLSMEQD 58
Query: 121 FSSSSED 127
FSSSSED
Sbjct: 59 FSSSSED 65
Score = 62.0 bits (149), Expect = 1e-10
Identities = 32/38 (84%), Positives = 33/38 (86%), Gaps = 3/38 (7%)
Query: 1 MSAQCTFLPLKVQEERGNPQVELTMRTVTALRGKSRNQ 38
MSAQCTFLPLKVQEERGNPQVELTMRTVT G S N+
Sbjct: 1 MSAQCTFLPLKVQEERGNPQVELTMRTVT---GNSLNK 35
>gi|239747721 PREDICTED: hypothetical protein [Homo sapiens]
Length = 65
Score = 81.6 bits (200), Expect = 1e-16
Identities = 45/67 (67%), Positives = 53/67 (79%), Gaps = 2/67 (2%)
Query: 61 LSSDCPTWLQVRVRGSWRWKMQLGELTRQVSGNSLNKRTPDHACSSSPGATSTSLSMEQD 120
+S+ C T+L ++V+ R Q+ R V+GNSLNKRTPDHACSSSPGATSTSLSMEQD
Sbjct: 1 MSAQC-TFLPLKVQEE-RGNPQVELTMRTVTGNSLNKRTPDHACSSSPGATSTSLSMEQD 58
Query: 121 FSSSSED 127
FSSSSED
Sbjct: 59 FSSSSED 65
Score = 62.0 bits (149), Expect = 1e-10
Identities = 32/38 (84%), Positives = 33/38 (86%), Gaps = 3/38 (7%)
Query: 1 MSAQCTFLPLKVQEERGNPQVELTMRTVTALRGKSRNQ 38
MSAQCTFLPLKVQEERGNPQVELTMRTVT G S N+
Sbjct: 1 MSAQCTFLPLKVQEERGNPQVELTMRTVT---GNSLNK 35
>gi|239741587 PREDICTED: hypothetical protein [Homo sapiens]
Length = 65
Score = 81.6 bits (200), Expect = 1e-16
Identities = 45/67 (67%), Positives = 53/67 (79%), Gaps = 2/67 (2%)
Query: 61 LSSDCPTWLQVRVRGSWRWKMQLGELTRQVSGNSLNKRTPDHACSSSPGATSTSLSMEQD 120
+S+ C T+L ++V+ R Q+ R V+GNSLNKRTPDHACSSSPGATSTSLSMEQD
Sbjct: 1 MSAQC-TFLPLKVQEE-RGNPQVELTMRTVTGNSLNKRTPDHACSSSPGATSTSLSMEQD 58
Query: 121 FSSSSED 127
FSSSSED
Sbjct: 59 FSSSSED 65
Score = 62.0 bits (149), Expect = 1e-10
Identities = 32/38 (84%), Positives = 33/38 (86%), Gaps = 3/38 (7%)
Query: 1 MSAQCTFLPLKVQEERGNPQVELTMRTVTALRGKSRNQ 38
MSAQCTFLPLKVQEERGNPQVELTMRTVT G S N+
Sbjct: 1 MSAQCTFLPLKVQEERGNPQVELTMRTVT---GNSLNK 35
>gi|40255101 solute carrier family 39 (zinc transporter), member 13
isoform b [Homo sapiens]
Length = 364
Score = 34.3 bits (77), Expect = 0.027
Identities = 37/131 (28%), Positives = 51/131 (38%), Gaps = 18/131 (13%)
Query: 6 TFLPLKVQEERGNPQVELTMR-TVTALRGKSRNQPSSFLYQEDWRLQPWLC--------G 56
T L L++ G Q L R T TA R ++ S RL W+C G
Sbjct: 20 TALALELLGRAGGSQPALRSRGTATACRLDNKESESWGALLSGERLDTWICSLLGSLMVG 79
Query: 57 AS-----LALSSDCPTWLQVRVRGSWRWKMQLGELTRQVSGNSLNKRTPD---HACSSSP 108
S L + + T L+ G+WR K L + GN P+ + CS+SP
Sbjct: 80 LSGVFPLLVIPLEMGTMLRSEA-GAWRLKQLLSFALGGLLGNVFLHLLPEAWAYTCSASP 138
Query: 109 GATSTSLSMEQ 119
G SL +Q
Sbjct: 139 GGEGQSLQQQQ 149
>gi|190014617 solute carrier family 39 (zinc transporter), member 13
isoform a [Homo sapiens]
Length = 371
Score = 34.3 bits (77), Expect = 0.027
Identities = 37/131 (28%), Positives = 51/131 (38%), Gaps = 18/131 (13%)
Query: 6 TFLPLKVQEERGNPQVELTMR-TVTALRGKSRNQPSSFLYQEDWRLQPWLC--------G 56
T L L++ G Q L R T TA R ++ S RL W+C G
Sbjct: 20 TALALELLGRAGGSQPALRSRGTATACRLDNKESESWGALLSGERLDTWICSLLGSLMVG 79
Query: 57 AS-----LALSSDCPTWLQVRVRGSWRWKMQLGELTRQVSGNSLNKRTPD---HACSSSP 108
S L + + T L+ G+WR K L + GN P+ + CS+SP
Sbjct: 80 LSGVFPLLVIPLEMGTMLRSEA-GAWRLKQLLSFALGGLLGNVFLHLLPEAWAYTCSASP 138
Query: 109 GATSTSLSMEQ 119
G SL +Q
Sbjct: 139 GGEGQSLQQQQ 149
>gi|239755001 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 29.6 bits (65), Expect = 0.65
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 28 VTALRGKSRNQPSSFLYQEDWRLQPWLCGASLALSSDCPTWLQVRVRGSWRWKMQLGELT 87
+ + RG R + + + W L P+LC ++ +S C +Q+ RG W W + G L+
Sbjct: 189 IGSARGLPRPEATPIAHPSHWALTPYLC-KTVQISVKC---VQLAWRG-WPWGLPQGTLS 243
Query: 88 RQVSGNSLN 96
+ G ++
Sbjct: 244 PWIWGGPVS 252
>gi|239749563 PREDICTED: hypothetical protein XP_002347087 [Homo
sapiens]
Length = 261
Score = 29.6 bits (65), Expect = 0.65
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 28 VTALRGKSRNQPSSFLYQEDWRLQPWLCGASLALSSDCPTWLQVRVRGSWRWKMQLGELT 87
+ + RG R + + + W L P+LC ++ +S C +Q+ RG W W + G L+
Sbjct: 189 IGSARGLPRPEATPIAHPSHWALTPYLC-KTVQISVKC---VQLAWRG-WPWGLPQGTLS 243
Query: 88 RQVSGNSLN 96
+ G ++
Sbjct: 244 PWIWGGPVS 252
>gi|154354974 phosphatase and actin regulator 2 isoform 3 [Homo
sapiens]
Length = 634
Score = 27.7 bits (60), Expect = 2.5
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 87 TRQVSGNSLNKRTPDHACSSSPGATSTS 114
TR+ +G+S +K+T S+SP +STS
Sbjct: 217 TREAAGSSHSKKTTGSKASASPSTSSTS 244
>gi|154354968 phosphatase and actin regulator 2 isoform 1 [Homo
sapiens]
Length = 645
Score = 27.7 bits (60), Expect = 2.5
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 87 TRQVSGNSLNKRTPDHACSSSPGATSTS 114
TR+ +G+S +K+T S+SP +STS
Sbjct: 228 TREAAGSSHSKKTTGSKASASPSTSSTS 255
>gi|58761506 sarcoma antigen NY-SAR-48 isoform b [Homo sapiens]
Length = 409
Score = 26.9 bits (58), Expect = 4.2
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 78 RWKMQLGELTRQVSGNSLNKRTP----DHACSSSPGATSTSLSMEQDFSSSSE 126
RW R+ G K TP D+ +SS A +T +S +DFSSSS+
Sbjct: 344 RWYFNQDSACRESGGAP--KNTPLSEDDNPGASSAPAQATFISPSEDFSSSSQ 394
>gi|58761504 sarcoma antigen NY-SAR-48 isoform a [Homo sapiens]
Length = 410
Score = 26.9 bits (58), Expect = 4.2
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 78 RWKMQLGELTRQVSGNSLNKRTP----DHACSSSPGATSTSLSMEQDFSSSSE 126
RW R+ G K TP D+ +SS A +T +S +DFSSSS+
Sbjct: 345 RWYFNQDSACRESGGAP--KNTPLSEDDNPGASSAPAQATFISPSEDFSSSSQ 395
>gi|197245440 hypothetical protein LOC23285 [Homo sapiens]
Length = 1354
Score = 26.9 bits (58), Expect = 4.2
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 78 RWKMQLGELTRQVSGNSLNKRT-PDHACSSSPGATSTSLSMEQDFSSSSE 126
R K+ G L Q L K T D C S G +S S +FS S+E
Sbjct: 254 RPKVLTGNLNVQAKAKPLKKATGKDSPCLSIAGPSSRSTDSSMEFSISTE 303
>gi|11342676 thyroid hormone receptor interactor 10 [Homo sapiens]
Length = 545
Score = 26.9 bits (58), Expect = 4.2
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 69 LQVRVRGSWRWKMQLGELTRQVSGNSLNKRTPDHACSSSPGATSTSLSMEQDFSSSSED 127
L+V+ +W + + L+ + S + R PD S+ P ++S S S QD SSE+
Sbjct: 403 LEVQKYEAWLAEAESRVLSNRGDSLSRHARPPDPPASAPPDSSSNSAS--QDTKESSEE 459
>gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo
sapiens]
Length = 284
Score = 26.6 bits (57), Expect = 5.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 15 ERGNPQVELTMRTVTALRGKSRNQ 38
ERG P+ + R ++ALRG+ R +
Sbjct: 196 ERGGPRAQAVRRRLSALRGRGRRR 219
>gi|239748639 PREDICTED: hypothetical protein XP_002346752 [Homo
sapiens]
Length = 286
Score = 26.6 bits (57), Expect = 5.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 15 ERGNPQVELTMRTVTALRGKSRNQ 38
ERG P+ + R ++ALRG+ R +
Sbjct: 198 ERGGPRAQAVRRRLSALRGRGRRR 221
>gi|157909822 pragmin [Homo sapiens]
Length = 1402
Score = 26.6 bits (57), Expect = 5.5
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 69 LQVRVRGSWRWKMQLGELTRQVSGNSLNKRTPDHACSSSPGATSTSLSMEQDFSSSS 125
L+ +GS W G ++GN +P C +P A+S+ LS+ S+ S
Sbjct: 880 LEKAFKGSGHWLPAAG-----LAGNRGGCGSPGLQCKGAPSASSSQLSVSSQASTGS 931
>gi|239756568 PREDICTED: similar to BCL2-associated transcription
factor 1 [Homo sapiens]
Length = 869
Score = 26.2 bits (56), Expect = 7.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 93 NSLNKRTPDHACSSSPGATSTSLSMEQDFSSSSE 126
+S +KR DH+ SSS A+ +S S ++ S E
Sbjct: 737 DSKHKREQDHSLSSSSSASPSSPSSREEKESKKE 770
>gi|169218320 PREDICTED: similar to BCL2-associated transcription
factor 1 isoform 2 [Homo sapiens]
Length = 869
Score = 26.2 bits (56), Expect = 7.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 93 NSLNKRTPDHACSSSPGATSTSLSMEQDFSSSSE 126
+S +KR DH+ SSS A+ +S S ++ S E
Sbjct: 737 DSKHKREQDHSLSSSSSASPSSPSSREEKESKKE 770
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 25.8 bits (55), Expect = 9.4
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 40 SSFLYQEDWRLQPWLCGASLALSSDCPTWLQVRVRGSWRWKMQLGELTR-QVSGNSLNKR 98
S+ L +E Q W + S T + V V ++ + T S +L +
Sbjct: 4213 STGLQEESTTFQSWPSSSDTTPSPPSTTAVPVEVSTTYHSRPSSTPTTHFSASSTTLGRS 4272
Query: 99 TPDHACSSSPGATSTSL 115
SSPGAT T+L
Sbjct: 4273 EESTTVHSSPGATGTAL 4289
>gi|21361796 ELL associated factor 2 [Homo sapiens]
Length = 260
Score = 25.8 bits (55), Expect = 9.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 103 ACSSSPGATSTSLSMEQDFSSSSED 127
+C SS + S+S S +D SS SED
Sbjct: 175 SCDSSSDSKSSSSSSSEDSSSDSED 199
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.125 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,014,417
Number of Sequences: 37866
Number of extensions: 187352
Number of successful extensions: 702
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 683
Number of HSP's gapped (non-prelim): 34
length of query: 127
length of database: 18,247,518
effective HSP length: 90
effective length of query: 37
effective length of database: 14,839,578
effective search space: 549064386
effective search space used: 549064386
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.