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Search of human proteins with 88952306
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|88952306 PREDICTED: similar to nuclear transport factor 2
[Homo sapiens]
(126 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|88952306 PREDICTED: similar to nuclear transport factor 2 [Ho... 266 3e-72
gi|169160905 PREDICTED: similar to nuclear transport factor 2 [H... 264 1e-71
gi|17451119 PREDICTED: similar to nuclear transport factor 2 [Ho... 264 2e-71
gi|5031985 nuclear transport factor 2 [Homo sapiens] 229 3e-61
gi|7019471 NTF2-like export factor 1 [Homo sapiens] 38 0.002
gi|21361724 nuclear transport factor 2-like export factor 2 [Hom... 38 0.002
gi|19923399 Ras-GTPase activating protein SH3 domain-binding pro... 36 0.009
gi|45359849 Ras-GTPase activating protein SH3 domain-binding pro... 36 0.009
gi|45359846 Ras-GTPase activating protein SH3 domain-binding pro... 36 0.009
gi|5031703 Ras-GTPase-activating protein SH3-domain-binding prot... 33 0.058
gi|38327552 Ras-GTPase-activating protein SH3-domain-binding pro... 33 0.058
gi|239740950 PREDICTED: similar to mitogen-activated protein kin... 27 4.1
gi|4885433 mitogen-activated protein kinase 8 interacting protei... 27 4.1
gi|169211037 PREDICTED: similar to mitogen-activated protein kin... 27 5.4
gi|34452681 ring finger protein 10 [Homo sapiens] 27 5.4
gi|37594449 Abl-philin 2 isoform 1 [Homo sapiens] 26 9.2
gi|37594455 Abl-philin 2 isoform 1 [Homo sapiens] 26 9.2
gi|32698946 hypothetical protein LOC283422 [Homo sapiens] 26 9.2
>gi|88952306 PREDICTED: similar to nuclear transport factor 2 [Homo
sapiens]
Length = 126
Score = 266 bits (680), Expect = 3e-72
Identities = 126/126 (100%), Positives = 126/126 (100%)
Query: 1 MGDKPVWEPIGSSFNQHYYQLFDNDRTQLGAIYIDASCLTWEVRQFQGKAAAVEKLSSLP 60
MGDKPVWEPIGSSFNQHYYQLFDNDRTQLGAIYIDASCLTWEVRQFQGKAAAVEKLSSLP
Sbjct: 1 MGDKPVWEPIGSSFNQHYYQLFDNDRTQLGAIYIDASCLTWEVRQFQGKAAAVEKLSSLP 60
Query: 61 FQKIQNSLRAQDHQPTPDSCIIGVVVGQLKADEDPIKGFHQMFLLKNINDGFCANDMFRF 120
FQKIQNSLRAQDHQPTPDSCIIGVVVGQLKADEDPIKGFHQMFLLKNINDGFCANDMFRF
Sbjct: 61 FQKIQNSLRAQDHQPTPDSCIIGVVVGQLKADEDPIKGFHQMFLLKNINDGFCANDMFRF 120
Query: 121 ALHNFG 126
ALHNFG
Sbjct: 121 ALHNFG 126
>gi|169160905 PREDICTED: similar to nuclear transport factor 2 [Homo
sapiens]
Length = 340
Score = 264 bits (675), Expect = 1e-71
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 2 GDKPVWEPIGSSFNQHYYQLFDNDRTQLGAIYIDASCLTWEVRQFQGKAAAVEKLSSLPF 61
GDKPVWEPIGSSFNQHYYQLFDNDRTQLGAIYIDASCLTWEVRQFQGKAAAVEKLSSLPF
Sbjct: 216 GDKPVWEPIGSSFNQHYYQLFDNDRTQLGAIYIDASCLTWEVRQFQGKAAAVEKLSSLPF 275
Query: 62 QKIQNSLRAQDHQPTPDSCIIGVVVGQLKADEDPIKGFHQMFLLKNINDGFCANDMFRFA 121
QKIQNSLRAQDHQPTPDSCIIGVVVGQLKADEDPIKGFHQMFLLKNINDGFCANDMFRFA
Sbjct: 276 QKIQNSLRAQDHQPTPDSCIIGVVVGQLKADEDPIKGFHQMFLLKNINDGFCANDMFRFA 335
Query: 122 LHNFG 126
LHNFG
Sbjct: 336 LHNFG 340
>gi|17451119 PREDICTED: similar to nuclear transport factor 2 [Homo
sapiens]
Length = 126
Score = 264 bits (674), Expect = 2e-71
Identities = 125/126 (99%), Positives = 125/126 (99%)
Query: 1 MGDKPVWEPIGSSFNQHYYQLFDNDRTQLGAIYIDASCLTWEVRQFQGKAAAVEKLSSLP 60
MGDKPVWEPIGSSFNQHYYQLFDNDRTQLGAIYIDASCLTWEVRQFQGKAAAVEKLSSLP
Sbjct: 1 MGDKPVWEPIGSSFNQHYYQLFDNDRTQLGAIYIDASCLTWEVRQFQGKAAAVEKLSSLP 60
Query: 61 FQKIQNSLRAQDHQPTPDSCIIGVVVGQLKADEDPIKGFHQMFLLKNINDGFCANDMFRF 120
FQKIQNSL AQDHQPTPDSCIIGVVVGQLKADEDPIKGFHQMFLLKNINDGFCANDMFRF
Sbjct: 61 FQKIQNSLTAQDHQPTPDSCIIGVVVGQLKADEDPIKGFHQMFLLKNINDGFCANDMFRF 120
Query: 121 ALHNFG 126
ALHNFG
Sbjct: 121 ALHNFG 126
>gi|5031985 nuclear transport factor 2 [Homo sapiens]
Length = 127
Score = 229 bits (585), Expect = 3e-61
Identities = 110/127 (86%), Positives = 116/127 (91%), Gaps = 1/127 (0%)
Query: 1 MGDKPVWEPIGSSFNQHYYQLFDNDRTQLGAIYIDASCLTWEVRQFQGKAAAVEKLSSLP 60
MGDKP+WE IGSSF QHYYQLFDNDRTQLGAIYIDASCLTWE +QFQGKAA VEKLSSLP
Sbjct: 1 MGDKPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLP 60
Query: 61 FQKIQNSLRAQDHQPTPDSCIIGVVVGQLKADEDPIKGFHQMFLLKNINDGF-CANDMFR 119
FQKIQ+S+ AQDHQPTPDSCII +VVGQLKADEDPI GFHQMFLLKNIND + C NDMFR
Sbjct: 61 FQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFR 120
Query: 120 FALHNFG 126
ALHNFG
Sbjct: 121 LALHNFG 127
>gi|7019471 NTF2-like export factor 1 [Homo sapiens]
Length = 140
Score = 38.1 bits (87), Expect = 0.002
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 18 YYQLFDNDRTQLGAIYIDASCLTWEVRQFQGKAAAVEKLSSLPFQKIQNSLRAQDHQPTP 77
YY D R L +Y+ + L W G+ + E LP + Q S+ D QP
Sbjct: 24 YYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSEFFEMLPSSEFQISV--VDCQPVH 81
Query: 78 D------SCIIGVVVGQLKADEDPIKGFHQMFLL 105
D + ++ V+ G +K + + + F+Q F+L
Sbjct: 82 DEATPSQTTVLVVICGSVKFEGNKQRDFNQNFIL 115
>gi|21361724 nuclear transport factor 2-like export factor 2 [Homo
sapiens]
Length = 197
Score = 37.7 bits (86), Expect = 0.002
Identities = 34/112 (30%), Positives = 47/112 (41%), Gaps = 9/112 (8%)
Query: 18 YYQLFDNDRTQLGAIYIDASCLTWEVRQFQGKAAAVEKLSSLPFQKIQ-NSLRAQD-HQP 75
YY+ D R L +Y+D + L W G A +LP + Q N L Q H+
Sbjct: 80 YYETMDKRRRALTRLYLDKATLIWNGNAVSGLDALNNFFDTLPSSEFQVNMLDCQPVHEQ 139
Query: 76 TPDS--CIIGVVVGQLKADEDPIKGFHQMFLL-----KNINDGFCANDMFRF 120
S ++ V G +K D + F+Q FLL N A+D FRF
Sbjct: 140 ATQSQTTVLVVTSGTVKFDGNKQHFFNQNFLLTAQSTPNNTVWKIASDCFRF 191
>gi|19923399 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform a [Homo sapiens]
Length = 482
Score = 35.8 bits (81), Expect = 0.009
Identities = 37/138 (26%), Positives = 53/138 (38%), Gaps = 16/138 (11%)
Query: 3 DKPVWEPIGSSFNQHYYQLFDNDRTQLGAIY----------IDASCLTWEVRQFQGKAAA 52
+KP +G F + YY L + L Y +DAS E G+
Sbjct: 4 EKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEA--VYGQNDI 61
Query: 53 VEKLSSLPFQKIQNSLRAQDHQPTPDSCIIGVVVGQLKADEDPIKGFHQMFLL----KNI 108
K+ SL F + +R D T ++ V+G L P + F Q F+L
Sbjct: 62 HHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSVP 121
Query: 109 NDGFCANDMFRFALHNFG 126
N + NDMFR+ FG
Sbjct: 122 NKFYVHNDMFRYEDEVFG 139
>gi|45359849 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform a [Homo sapiens]
Length = 482
Score = 35.8 bits (81), Expect = 0.009
Identities = 37/138 (26%), Positives = 53/138 (38%), Gaps = 16/138 (11%)
Query: 3 DKPVWEPIGSSFNQHYYQLFDNDRTQLGAIY----------IDASCLTWEVRQFQGKAAA 52
+KP +G F + YY L + L Y +DAS E G+
Sbjct: 4 EKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEA--VYGQNDI 61
Query: 53 VEKLSSLPFQKIQNSLRAQDHQPTPDSCIIGVVVGQLKADEDPIKGFHQMFLL----KNI 108
K+ SL F + +R D T ++ V+G L P + F Q F+L
Sbjct: 62 HHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSVP 121
Query: 109 NDGFCANDMFRFALHNFG 126
N + NDMFR+ FG
Sbjct: 122 NKFYVHNDMFRYEDEVFG 139
>gi|45359846 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform b [Homo sapiens]
Length = 449
Score = 35.8 bits (81), Expect = 0.009
Identities = 37/138 (26%), Positives = 53/138 (38%), Gaps = 16/138 (11%)
Query: 3 DKPVWEPIGSSFNQHYYQLFDNDRTQLGAIY----------IDASCLTWEVRQFQGKAAA 52
+KP +G F + YY L + L Y +DAS E G+
Sbjct: 4 EKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEA--VYGQNDI 61
Query: 53 VEKLSSLPFQKIQNSLRAQDHQPTPDSCIIGVVVGQLKADEDPIKGFHQMFLL----KNI 108
K+ SL F + +R D T ++ V+G L P + F Q F+L
Sbjct: 62 HHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSVP 121
Query: 109 NDGFCANDMFRFALHNFG 126
N + NDMFR+ FG
Sbjct: 122 NKFYVHNDMFRYEDEVFG 139
>gi|5031703 Ras-GTPase-activating protein SH3-domain-binding protein
[Homo sapiens]
Length = 466
Score = 33.1 bits (74), Expect = 0.058
Identities = 33/136 (24%), Positives = 50/136 (36%), Gaps = 12/136 (8%)
Query: 3 DKPVWEPIGSSFNQHYYQLFDNDRTQLGAIYIDASCLTWEVRQFQGKAAAV--------E 54
+KP +G F + YY L + L Y S GK A
Sbjct: 4 EKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHR 63
Query: 55 KLSSLPFQKIQNSLRAQDHQPTPDSCIIGVVVGQLKADEDPIKGFHQMFLL----KNIND 110
K+ S F +R D T + ++ V+G L + ++ F Q F+L N
Sbjct: 64 KVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANK 123
Query: 111 GFCANDMFRFALHNFG 126
+ ND+FR+ FG
Sbjct: 124 FYVHNDIFRYQDEVFG 139
>gi|38327552 Ras-GTPase-activating protein SH3-domain-binding
protein [Homo sapiens]
Length = 466
Score = 33.1 bits (74), Expect = 0.058
Identities = 33/136 (24%), Positives = 50/136 (36%), Gaps = 12/136 (8%)
Query: 3 DKPVWEPIGSSFNQHYYQLFDNDRTQLGAIYIDASCLTWEVRQFQGKAAAV--------E 54
+KP +G F + YY L + L Y S GK A
Sbjct: 4 EKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHR 63
Query: 55 KLSSLPFQKIQNSLRAQDHQPTPDSCIIGVVVGQLKADEDPIKGFHQMFLL----KNIND 110
K+ S F +R D T + ++ V+G L + ++ F Q F+L N
Sbjct: 64 KVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANK 123
Query: 111 GFCANDMFRFALHNFG 126
+ ND+FR+ FG
Sbjct: 124 FYVHNDIFRYQDEVFG 139
>gi|239740950 PREDICTED: similar to mitogen-activated protein kinase
8 interacting protein 1 [Homo sapiens]
Length = 442
Score = 26.9 bits (58), Expect = 4.1
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 58 SLPFQKIQNSLRAQDHQPTPDSCII-----GVVVGQLKADEDPIKG--FHQMFLLKNIN 109
S QKI + R H P SC++ GV +G D KG F LKNI+
Sbjct: 318 SAAMQKIATTRRLTVHFNPPSSCVLEISVRGVKIGVKADDSQEAKGNKCSHFFQLKNIS 376
>gi|4885433 mitogen-activated protein kinase 8 interacting protein 1
[Homo sapiens]
Length = 711
Score = 26.9 bits (58), Expect = 4.1
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Query: 62 QKIQNSLRAQDHQPTPDSCII-----GVVVGQLKADEDPIKG--FHQMFLLKNINDGFC 113
QKI + R H P SC++ GV +G D KG F LKNI+ FC
Sbjct: 591 QKIATTRRLTVHFNPPSSCVLEISVRGVKIGVKADDSQEAKGNKCSHFFQLKNIS--FC 647
>gi|169211037 PREDICTED: similar to mitogen-activated protein kinase
8 interacting protein 1 [Homo sapiens]
Length = 423
Score = 26.6 bits (57), Expect = 5.4
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 58 SLPFQKIQNSLRAQDHQPTPDSCII-----GVVVGQLKADEDPIKG--FHQMFLLKNIN 109
S QKI + R H P SC++ GV +G D KG F LKNI+
Sbjct: 299 SAAMQKIATTRRLTVHFNPPSSCVLEISVRGVKIGIKADDSQEAKGNKCSHFFQLKNIS 357
>gi|34452681 ring finger protein 10 [Homo sapiens]
Length = 811
Score = 26.6 bits (57), Expect = 5.4
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 62 QKIQNSLRAQDHQPTPDSCIIGVVVGQLKADEDPIKG 98
+K+ + + + TP+SC I + +LK E+ + G
Sbjct: 348 EKVALEQQLAEEKHTPESCFIEAAIQELKTREEALSG 384
>gi|37594449 Abl-philin 2 isoform 1 [Homo sapiens]
Length = 377
Score = 25.8 bits (55), Expect = 9.2
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 14 FNQHYYQLFDNDRTQLGAIYIDASCLTWEVRQFQGKAAAVEKLSSLPFQKIQNSLRAQDH 73
+N Y+ F T LG +Y S +W++ F+ AA+EK+ L K+Q H
Sbjct: 195 YNHRYFFSFCFFMT-LGCVY--CSYGSWDL--FREAYAAIEKMKQLDKNKLQAVANQTYH 249
Query: 74 QPTP 77
Q P
Sbjct: 250 QTPP 253
>gi|37594455 Abl-philin 2 isoform 1 [Homo sapiens]
Length = 377
Score = 25.8 bits (55), Expect = 9.2
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 14 FNQHYYQLFDNDRTQLGAIYIDASCLTWEVRQFQGKAAAVEKLSSLPFQKIQNSLRAQDH 73
+N Y+ F T LG +Y S +W++ F+ AA+EK+ L K+Q H
Sbjct: 195 YNHRYFFSFCFFMT-LGCVY--CSYGSWDL--FREAYAAIEKMKQLDKNKLQAVANQTYH 249
Query: 74 QPTP 77
Q P
Sbjct: 250 QTPP 253
>gi|32698946 hypothetical protein LOC283422 [Homo sapiens]
Length = 138
Score = 25.8 bits (55), Expect = 9.2
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 39 LTWEVRQFQ-GKAAAVEKLSSLPFQKIQNSLRAQDHQPTPDSC 80
+ W +++ + G+ A +EK QKI+ +R Q Q T D C
Sbjct: 100 IAWRIQRLKSGQTALIEKKK----QKIEEDVRHQCQQTTCDRC 138
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.139 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,889,370
Number of Sequences: 37866
Number of extensions: 183092
Number of successful extensions: 341
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 333
Number of HSP's gapped (non-prelim): 18
length of query: 126
length of database: 18,247,518
effective HSP length: 90
effective length of query: 36
effective length of database: 14,839,578
effective search space: 534224808
effective search space used: 534224808
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.