Search of human proteins with 84798620

Search of human proteins with 84798620

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|84798620 CDC42 small effector 1 [Homo sapiens]
         (79 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|9910544 CDC42 small effector 1 [Homo sapiens]                      170   2e-43
gi|84798620 CDC42 small effector 1 [Homo sapiens]                     170   2e-43
gi|84697026 CDC42 small effector 2 [Homo sapiens]                      82   7e-17
gi|9910378 CDC42 small effector 2 [Homo sapiens]                       82   7e-17
gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap...    34   0.029
gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II, pol...    28   1.2  
gi|156766068 CDC42 binding protein kinase gamma (DMPK-like) [Hom...    28   1.2  
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]             28   2.1  
gi|237820711 lymphocyte antigen 6 complex, locus K isoform 1 [Ho...    28   2.1  
gi|28559039 mediator complex subunit 1 [Homo sapiens]                  27   4.6  
gi|224465184 nuclear factor I/A isoform 4 [Homo sapiens]               26   6.0  
gi|224465182 nuclear factor I/A isoform 3 [Homo sapiens]               26   6.0  
gi|30840980 nuclear factor I/A isoform 2 [Homo sapiens]                26   6.0  
gi|197927284 nuclear factor I/A isoform 1 [Homo sapiens]               26   6.0  
gi|119943108 synapse-associated protein 102 isoform b [Homo sapi...    26   6.0  
gi|119943106 synapse-associated protein 102 isoform a [Homo sapi...    26   6.0  
gi|115527097 CDC42-binding protein kinase beta [Homo sapiens]          26   7.9  

>gi|9910544 CDC42 small effector 1 [Homo sapiens]
          Length = 79

 Score =  170 bits (431), Expect = 2e-43
 Identities = 79/79 (100%), Positives = 79/79 (100%)

Query: 1  MSEFWHKLGCCVVEKPQPKKKRRRIDRTMIGEPMNFVHLTHIGSGEMGAGDGLAMTGAVQ 60
          MSEFWHKLGCCVVEKPQPKKKRRRIDRTMIGEPMNFVHLTHIGSGEMGAGDGLAMTGAVQ
Sbjct: 1  MSEFWHKLGCCVVEKPQPKKKRRRIDRTMIGEPMNFVHLTHIGSGEMGAGDGLAMTGAVQ 60

Query: 61 EQMRSKGNRDRPWSNSRGL 79
          EQMRSKGNRDRPWSNSRGL
Sbjct: 61 EQMRSKGNRDRPWSNSRGL 79


>gi|84798620 CDC42 small effector 1 [Homo sapiens]
          Length = 79

 Score =  170 bits (431), Expect = 2e-43
 Identities = 79/79 (100%), Positives = 79/79 (100%)

Query: 1  MSEFWHKLGCCVVEKPQPKKKRRRIDRTMIGEPMNFVHLTHIGSGEMGAGDGLAMTGAVQ 60
          MSEFWHKLGCCVVEKPQPKKKRRRIDRTMIGEPMNFVHLTHIGSGEMGAGDGLAMTGAVQ
Sbjct: 1  MSEFWHKLGCCVVEKPQPKKKRRRIDRTMIGEPMNFVHLTHIGSGEMGAGDGLAMTGAVQ 60

Query: 61 EQMRSKGNRDRPWSNSRGL 79
          EQMRSKGNRDRPWSNSRGL
Sbjct: 61 EQMRSKGNRDRPWSNSRGL 79


>gi|84697026 CDC42 small effector 2 [Homo sapiens]
          Length = 84

 Score = 82.4 bits (202), Expect = 7e-17
 Identities = 38/67 (56%), Positives = 50/67 (74%), Gaps = 3/67 (4%)

Query: 1  MSEFWHKLGCCVVEKPQPKKKRRRIDRTMIGEPMNFVHLTHIGSGEMGAGDGLAMTGAVQ 60
          MSEFW    CC+ E+PQPK+ RRRIDR+MIGEP NFVH  H+GSG++ +  G+    ++Q
Sbjct: 1  MSEFWLCFNCCIAEQPQPKR-RRRIDRSMIGEPTNFVHTAHVGSGDLFS--GMNSVSSIQ 57

Query: 61 EQMRSKG 67
           QM+SKG
Sbjct: 58 NQMQSKG 64


>gi|9910378 CDC42 small effector 2 [Homo sapiens]
          Length = 84

 Score = 82.4 bits (202), Expect = 7e-17
 Identities = 38/67 (56%), Positives = 50/67 (74%), Gaps = 3/67 (4%)

Query: 1  MSEFWHKLGCCVVEKPQPKKKRRRIDRTMIGEPMNFVHLTHIGSGEMGAGDGLAMTGAVQ 60
          MSEFW    CC+ E+PQPK+ RRRIDR+MIGEP NFVH  H+GSG++ +  G+    ++Q
Sbjct: 1  MSEFWLCFNCCIAEQPQPKR-RRRIDRSMIGEPTNFVHTAHVGSGDLFS--GMNSVSSIQ 57

Query: 61 EQMRSKG 67
           QM+SKG
Sbjct: 58 NQMQSKG 64


>gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo
           sapiens]
          Length = 505

 Score = 33.9 bits (76), Expect = 0.029
 Identities = 13/30 (43%), Positives = 20/30 (66%)

Query: 14  EKPQPKKKRRRIDRTMIGEPMNFVHLTHIG 43
           EK + K K++R+ +  IG P NF H+ H+G
Sbjct: 187 EKKKGKAKKKRLTKADIGTPSNFQHIGHVG 216


>gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II,
           polypeptide A) phosphatase, subunit 1 isoform FCP1a
           [Homo sapiens]
          Length = 961

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 14  EKPQPKKKRRRIDRTMIGEPMNFVHLTHIGSGEMGAGDGLAMTGAVQEQMRSKGNRD 70
           E+PQP+K   R +RT +G P +       G G  G    L    A  E  R   N D
Sbjct: 884 EEPQPRKPGTRRERT-LGAPASSERSAAGGRGPRGHKRKLNEEDAASESSRESSNED 939


>gi|156766068 CDC42 binding protein kinase gamma (DMPK-like) [Homo
            sapiens]
          Length = 1551

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 8/47 (17%)

Query: 13   VEKPQPKKKRRR------IDRTMIGEPMNFVHLTHIG--SGEMGAGD 51
            V + Q K++RR       +   +I  P NF HL H+G  +G  GA D
Sbjct: 1414 VSEEQQKQQRREMLKDPFVRSKLISPPTNFNHLVHVGPANGRPGARD 1460


>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
          Length = 502

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 4/32 (12%)

Query: 16  PQPKKKRR----RIDRTMIGEPMNFVHLTHIG 43
           P P  K+R    +I +  IG P  F H++H+G
Sbjct: 220 PSPADKKRSGKKKISKADIGAPSGFKHVSHVG 251


>gi|237820711 lymphocyte antigen 6 complex, locus K isoform 1 [Homo
           sapiens]
          Length = 165

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 5/31 (16%)

Query: 9   GCCVVEKPQPKKKRRRIDRTMIGEPMNFVHL 39
           GC  +E+P+P++K     R ++ EPM F +L
Sbjct: 88  GCAAMERPKPEEK-----RFLLEEPMPFFYL 113


>gi|28559039 mediator complex subunit 1 [Homo sapiens]
          Length = 1581

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 45 GEMGAGDGLAMTGAVQEQMRSKGNRDRPWSNS 76
          GE    + L+   ++ E++ +K N++RPWS +
Sbjct: 5  GETEESEKLSKMSSLLERLHAKFNQNRPWSET 36


>gi|224465184 nuclear factor I/A isoform 4 [Homo sapiens]
          Length = 554

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)

Query: 10  CCVVEKPQPKKKRRRID 26
           CCV+  P  K K RRID
Sbjct: 147 CCVLSNPDQKGKMRRID 163


>gi|224465182 nuclear factor I/A isoform 3 [Homo sapiens]
          Length = 501

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)

Query: 10  CCVVEKPQPKKKRRRID 26
           CCV+  P  K K RRID
Sbjct: 94  CCVLSNPDQKGKMRRID 110


>gi|30840980 nuclear factor I/A isoform 2 [Homo sapiens]
          Length = 498

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)

Query: 10  CCVVEKPQPKKKRRRID 26
           CCV+  P  K K RRID
Sbjct: 102 CCVLSNPDQKGKMRRID 118


>gi|197927284 nuclear factor I/A isoform 1 [Homo sapiens]
          Length = 509

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)

Query: 10  CCVVEKPQPKKKRRRID 26
           CCV+  P  K K RRID
Sbjct: 102 CCVLSNPDQKGKMRRID 118


>gi|119943108 synapse-associated protein 102 isoform b [Homo
           sapiens]
          Length = 512

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 5/37 (13%)

Query: 1   MSEFWHKLGCCVVEKPQPKKKRRRIDRTMIGEPMNFV 37
           +SEF HK G CV     P   R R D  + G+  +FV
Sbjct: 340 ISEFPHKFGSCV-----PHTTRPRRDNEVDGQDYHFV 371


>gi|119943106 synapse-associated protein 102 isoform a [Homo
           sapiens]
          Length = 817

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 5/37 (13%)

Query: 1   MSEFWHKLGCCVVEKPQPKKKRRRIDRTMIGEPMNFV 37
           +SEF HK G CV     P   R R D  + G+  +FV
Sbjct: 645 ISEFPHKFGSCV-----PHTTRPRRDNEVDGQDYHFV 676


>gi|115527097 CDC42-binding protein kinase beta [Homo sapiens]
          Length = 1711

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 29   MIGEPMNFVHLTHIGSGE 46
            MI  P NF H+ H+G G+
Sbjct: 1582 MISNPTNFNHVAHMGPGD 1599


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.135    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,418,282
Number of Sequences: 37866
Number of extensions: 142180
Number of successful extensions: 336
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 322
Number of HSP's gapped (non-prelim): 17
length of query: 79
length of database: 18,247,518
effective HSP length: 51
effective length of query: 28
effective length of database: 16,316,352
effective search space: 456857856
effective search space used: 456857856
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.