Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 78711820
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|78711820 succinate dehydrogenase complex, subunit C isoform
2 precursor [Homo sapiens]
(150 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|78711820 succinate dehydrogenase complex, subunit C isoform 2... 324 2e-89
gi|239749866 PREDICTED: similar to succinate dehydrogenase compl... 290 2e-79
gi|239744168 PREDICTED: similar to succinate dehydrogenase compl... 290 2e-79
gi|4506863 succinate dehydrogenase complex, subunit C isoform 1 ... 171 2e-43
gi|78711822 succinate dehydrogenase complex, subunit C isoform 3... 84 4e-17
gi|155369255 hypothetical protein LOC642502 [Homo sapiens] 84 4e-17
gi|78711824 succinate dehydrogenase complex, subunit C isoform 4... 49 2e-06
gi|28376633 klotho beta [Homo sapiens] 29 1.7
gi|4557375 Kruppel-like factor 9 [Homo sapiens] 28 3.8
gi|195947389 autotaxin isoform 3 preproprotein [Homo sapiens] 28 3.8
gi|91823602 autotaxin isoform 2 preproprotein [Homo sapiens] 28 3.8
gi|91823274 autotaxin isoform 1 preproprotein [Homo sapiens] 28 3.8
gi|153090207 Golgi-localized syntaphilin-related protein isoform... 28 3.8
gi|153090203 Golgi-localized syntaphilin-related protein isoform... 28 3.8
gi|153090201 Golgi-localized syntaphilin-related protein isoform... 28 3.8
gi|153090191 Golgi-localized syntaphilin-related protein isoform... 28 3.8
gi|153090182 Golgi-localized syntaphilin-related protein isoform... 28 3.8
gi|148540145 Golgi-localized syntaphilin-related protein isoform... 28 3.8
gi|153090205 Golgi-localized syntaphilin-related protein isoform... 28 3.8
gi|153090199 Golgi-localized syntaphilin-related protein isoform... 28 3.8
gi|153090197 Golgi-localized syntaphilin-related protein isoform... 28 3.8
gi|153090195 Golgi-localized syntaphilin-related protein isoform... 28 3.8
gi|153090187 Golgi-localized syntaphilin-related protein isoform... 28 3.8
gi|153090185 Golgi-localized syntaphilin-related protein isoform... 28 3.8
gi|239753568 PREDICTED: hypothetical protein [Homo sapiens] 27 5.0
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 27 5.0
gi|115430259 solute carrier family 39 (zinc transporter), member... 27 6.5
gi|115430255 solute carrier family 39 (zinc transporter), member... 27 6.5
gi|149773456 hypothetical protein LOC643314 [Homo sapiens] 27 8.5
gi|239751592 PREDICTED: hypothetical protein XP_002347924 [Homo ... 27 8.5
>gi|78711820 succinate dehydrogenase complex, subunit C isoform 2
precursor [Homo sapiens]
Length = 150
Score = 324 bits (831), Expect = 2e-89
Identities = 150/150 (100%), Positives = 150/150 (100%)
Query: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS 60
MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS
Sbjct: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS 60
Query: 61 WSLPMAMSICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGSYCVVLYGAGSHVKKGGS 120
WSLPMAMSICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGSYCVVLYGAGSHVKKGGS
Sbjct: 61 WSLPMAMSICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGSYCVVLYGAGSHVKKGGS 120
Query: 121 QHHLPTHYYIHPSFCLSFLSPAWEKFSLFV 150
QHHLPTHYYIHPSFCLSFLSPAWEKFSLFV
Sbjct: 121 QHHLPTHYYIHPSFCLSFLSPAWEKFSLFV 150
>gi|239749866 PREDICTED: similar to succinate dehydrogenase complex,
subunit C [Homo sapiens]
Length = 150
Score = 290 bits (743), Expect = 2e-79
Identities = 132/150 (88%), Positives = 138/150 (92%)
Query: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS 60
MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTT K+EMERFWNKN G NRP+SPH+TIYS
Sbjct: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTGKQEMERFWNKNTGLNRPVSPHVTIYS 60
Query: 61 WSLPMAMSICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGSYCVVLYGAGSHVKKGGS 120
WSLPMAM+ICH TG AL ADV PRKRPEDSPAIPVWSGCPGSYCVVL AGSH+K GGS
Sbjct: 61 WSLPMAMAICHHDTGTALRADVRPRKRPEDSPAIPVWSGCPGSYCVVLCRAGSHMKNGGS 120
Query: 121 QHHLPTHYYIHPSFCLSFLSPAWEKFSLFV 150
QHH+PTHYYIHPSFCLS LSPAWEKFSLFV
Sbjct: 121 QHHIPTHYYIHPSFCLSLLSPAWEKFSLFV 150
>gi|239744168 PREDICTED: similar to succinate dehydrogenase complex,
subunit C [Homo sapiens]
Length = 150
Score = 290 bits (743), Expect = 2e-79
Identities = 132/150 (88%), Positives = 138/150 (92%)
Query: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS 60
MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTT K+EMERFWNKN G NRP+SPH+TIYS
Sbjct: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTGKQEMERFWNKNTGLNRPVSPHVTIYS 60
Query: 61 WSLPMAMSICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGSYCVVLYGAGSHVKKGGS 120
WSLPMAM+ICH TG AL ADV PRKRPEDSPAIPVWSGCPGSYCVVL AGSH+K GGS
Sbjct: 61 WSLPMAMAICHHDTGTALRADVRPRKRPEDSPAIPVWSGCPGSYCVVLCRAGSHMKNGGS 120
Query: 121 QHHLPTHYYIHPSFCLSFLSPAWEKFSLFV 150
QHH+PTHYYIHPSFCLS LSPAWEKFSLFV
Sbjct: 121 QHHIPTHYYIHPSFCLSLLSPAWEKFSLFV 150
>gi|4506863 succinate dehydrogenase complex, subunit C isoform 1
precursor [Homo sapiens]
Length = 169
Score = 171 bits (433), Expect = 2e-43
Identities = 81/82 (98%), Positives = 81/82 (98%)
Query: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS 60
MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS
Sbjct: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS 60
Query: 61 WSLPMAMSICHRGTGIALSADV 82
WSLPMAMSICHRGTGIALSA V
Sbjct: 61 WSLPMAMSICHRGTGIALSAGV 82
>gi|78711822 succinate dehydrogenase complex, subunit C isoform 3
precursor [Homo sapiens]
Length = 135
Score = 84.0 bits (206), Expect = 4e-17
Identities = 47/82 (57%), Positives = 47/82 (57%), Gaps = 34/82 (41%)
Query: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS 60
MAALLLRHVGRHCLRAHFSPQLCIRN
Sbjct: 1 MAALLLRHVGRHCLRAHFSPQLCIRN---------------------------------- 26
Query: 61 WSLPMAMSICHRGTGIALSADV 82
WSLPMAMSICHRGTGIALSA V
Sbjct: 27 WSLPMAMSICHRGTGIALSAGV 48
>gi|155369255 hypothetical protein LOC642502 [Homo sapiens]
Length = 135
Score = 84.0 bits (206), Expect = 4e-17
Identities = 47/82 (57%), Positives = 47/82 (57%), Gaps = 34/82 (41%)
Query: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS 60
MAALLLRHVGRHCLRAHFSPQLCIRN
Sbjct: 1 MAALLLRHVGRHCLRAHFSPQLCIRN---------------------------------- 26
Query: 61 WSLPMAMSICHRGTGIALSADV 82
WSLPMAMSICHRGTGIALSA V
Sbjct: 27 WSLPMAMSICHRGTGIALSAGV 48
>gi|78711824 succinate dehydrogenase complex, subunit C isoform 4
precursor [Homo sapiens]
Length = 116
Score = 48.9 bits (115), Expect = 2e-06
Identities = 22/25 (88%), Positives = 23/25 (92%)
Query: 58 IYSWSLPMAMSICHRGTGIALSADV 82
+ SWSLPMAMSICHRGTGIALSA V
Sbjct: 5 LLSWSLPMAMSICHRGTGIALSAGV 29
>gi|28376633 klotho beta [Homo sapiens]
Length = 1044
Score = 28.9 bits (63), Expect = 1.7
Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 50 RPLSPHITIYSWSLPMAMSICHRG----TGIALSADVGPRKRPEDSPAIPVWSGCPGSYC 105
R + P +T+Y W LP+A+ + G T I + D + W Y
Sbjct: 185 RNIEPIVTLYHWDLPLALQEKYGGWKNDTIIDIFNDYATYCFQMFGDRVKYWITIHNPYL 244
Query: 106 VVLYGAGSHVKKGGSQHHLPTHYYI 130
V +G G+ + G + +L Y +
Sbjct: 245 VAWHGYGTGMHAPGEKGNLAAVYTV 269
>gi|4557375 Kruppel-like factor 9 [Homo sapiens]
Length = 244
Score = 27.7 bits (60), Expect = 3.8
Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 21/85 (24%)
Query: 47 GSNRPLSPHITIYSWSLPMAMSICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGSYCV 106
GS+ SP S P +S+ H G+A KR + CP S C
Sbjct: 104 GSSPSHSPEERQDPGSAPSPLSLLH--PGVAAKGKHASEKRHK----------CPYSGCG 151
Query: 107 VLYGAGSHVKKGGSQHHLPTHYYIH 131
+YG SH+K HY +H
Sbjct: 152 KVYGKSSHLK---------AHYRVH 167
>gi|195947389 autotaxin isoform 3 preproprotein [Homo sapiens]
Length = 888
Score = 27.7 bits (60), Expect = 3.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 119 GSQHHLPTHYYIHPSFCLSFLSPA 142
GS +PTHYY + CL F PA
Sbjct: 784 GSSIPVPTHYYSIITSCLDFTQPA 807
>gi|91823602 autotaxin isoform 2 preproprotein [Homo sapiens]
Length = 863
Score = 27.7 bits (60), Expect = 3.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 119 GSQHHLPTHYYIHPSFCLSFLSPA 142
GS +PTHYY + CL F PA
Sbjct: 759 GSSIPVPTHYYSIITSCLDFTQPA 782
>gi|91823274 autotaxin isoform 1 preproprotein [Homo sapiens]
Length = 915
Score = 27.7 bits (60), Expect = 3.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 119 GSQHHLPTHYYIHPSFCLSFLSPA 142
GS +PTHYY + CL F PA
Sbjct: 811 GSSIPVPTHYYSIITSCLDFTQPA 834
>gi|153090207 Golgi-localized syntaphilin-related protein isoform c
[Homo sapiens]
Length = 660
Score = 27.7 bits (60), Expect = 3.8
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 68 SICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGS 103
S C TG S V P K P D+ P+ CPGS
Sbjct: 70 SFCSDDTGCPSSQSVSPVKTPSDAGNSPI-GFCPGS 104
>gi|153090203 Golgi-localized syntaphilin-related protein isoform b
[Homo sapiens]
Length = 662
Score = 27.7 bits (60), Expect = 3.8
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 68 SICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGS 103
S C TG S V P K P D+ P+ CPGS
Sbjct: 72 SFCSDDTGCPSSQSVSPVKTPSDAGNSPI-GFCPGS 106
>gi|153090201 Golgi-localized syntaphilin-related protein isoform b
[Homo sapiens]
Length = 662
Score = 27.7 bits (60), Expect = 3.8
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 68 SICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGS 103
S C TG S V P K P D+ P+ CPGS
Sbjct: 72 SFCSDDTGCPSSQSVSPVKTPSDAGNSPI-GFCPGS 106
>gi|153090191 Golgi-localized syntaphilin-related protein isoform b
[Homo sapiens]
Length = 662
Score = 27.7 bits (60), Expect = 3.8
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 68 SICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGS 103
S C TG S V P K P D+ P+ CPGS
Sbjct: 72 SFCSDDTGCPSSQSVSPVKTPSDAGNSPI-GFCPGS 106
>gi|153090182 Golgi-localized syntaphilin-related protein isoform b
[Homo sapiens]
Length = 662
Score = 27.7 bits (60), Expect = 3.8
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 68 SICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGS 103
S C TG S V P K P D+ P+ CPGS
Sbjct: 72 SFCSDDTGCPSSQSVSPVKTPSDAGNSPI-GFCPGS 106
>gi|148540145 Golgi-localized syntaphilin-related protein isoform b
[Homo sapiens]
Length = 662
Score = 27.7 bits (60), Expect = 3.8
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 68 SICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGS 103
S C TG S V P K P D+ P+ CPGS
Sbjct: 72 SFCSDDTGCPSSQSVSPVKTPSDAGNSPI-GFCPGS 106
>gi|153090205 Golgi-localized syntaphilin-related protein isoform a
[Homo sapiens]
Length = 663
Score = 27.7 bits (60), Expect = 3.8
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 68 SICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGS 103
S C TG S V P K P D+ P+ CPGS
Sbjct: 73 SFCSDDTGCPSSQSVSPVKTPSDAGNSPI-GFCPGS 107
>gi|153090199 Golgi-localized syntaphilin-related protein isoform a
[Homo sapiens]
Length = 663
Score = 27.7 bits (60), Expect = 3.8
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 68 SICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGS 103
S C TG S V P K P D+ P+ CPGS
Sbjct: 73 SFCSDDTGCPSSQSVSPVKTPSDAGNSPI-GFCPGS 107
>gi|153090197 Golgi-localized syntaphilin-related protein isoform a
[Homo sapiens]
Length = 663
Score = 27.7 bits (60), Expect = 3.8
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 68 SICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGS 103
S C TG S V P K P D+ P+ CPGS
Sbjct: 73 SFCSDDTGCPSSQSVSPVKTPSDAGNSPI-GFCPGS 107
>gi|153090195 Golgi-localized syntaphilin-related protein isoform a
[Homo sapiens]
Length = 663
Score = 27.7 bits (60), Expect = 3.8
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 68 SICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGS 103
S C TG S V P K P D+ P+ CPGS
Sbjct: 73 SFCSDDTGCPSSQSVSPVKTPSDAGNSPI-GFCPGS 107
>gi|153090187 Golgi-localized syntaphilin-related protein isoform a
[Homo sapiens]
Length = 663
Score = 27.7 bits (60), Expect = 3.8
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 68 SICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGS 103
S C TG S V P K P D+ P+ CPGS
Sbjct: 73 SFCSDDTGCPSSQSVSPVKTPSDAGNSPI-GFCPGS 107
>gi|153090185 Golgi-localized syntaphilin-related protein isoform a
[Homo sapiens]
Length = 663
Score = 27.7 bits (60), Expect = 3.8
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 68 SICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGS 103
S C TG S V P K P D+ P+ CPGS
Sbjct: 73 SFCSDDTGCPSSQSVSPVKTPSDAGNSPI-GFCPGS 107
>gi|239753568 PREDICTED: hypothetical protein [Homo sapiens]
Length = 352
Score = 27.3 bits (59), Expect = 5.0
Identities = 17/63 (26%), Positives = 25/63 (39%)
Query: 62 SLPMAMSICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGSYCVVLYGAGSHVKKGGSQ 121
+LP + R G AL G E IP+ GCP + +G +H G +
Sbjct: 37 ALPTPPQVHSRKPGPALRFPSGHHTLRERLAPIPLGRGCPPALVSPAWGLQAHSLCGSPE 96
Query: 122 HHL 124
H+
Sbjct: 97 RHM 99
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 27.3 bits (59), Expect = 5.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 70 CHRGTGIALSADVGPRKRPEDSPAIP 95
C+RGTG A+S GP + SP P
Sbjct: 817 CYRGTGAAVSTRPGPLPTTQYSPGPP 842
>gi|115430259 solute carrier family 39 (zinc transporter), member 4
isoform 1 [Homo sapiens]
Length = 622
Score = 26.9 bits (58), Expect = 6.5
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 77 ALSADVGPRKRPEDSPAI---PVWSGCPGSYCVVLYGAGSHVKKGGSQHHLPTHYY 129
A +A P+ D P + V +G PGS VL HV+ G H LP+ Y
Sbjct: 124 ARAAGQTPKTACVDIPQLLEEAVGAGAPGSAGGVLAALLDHVRSGSCFHALPSPQY 179
>gi|115430255 solute carrier family 39 (zinc transporter), member 4
isoform 2 [Homo sapiens]
Length = 647
Score = 26.9 bits (58), Expect = 6.5
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 77 ALSADVGPRKRPEDSPAI---PVWSGCPGSYCVVLYGAGSHVKKGGSQHHLPTHYY 129
A +A P+ D P + V +G PGS VL HV+ G H LP+ Y
Sbjct: 149 ARAAGQTPKTACVDIPQLLEEAVGAGAPGSAGGVLAALLDHVRSGSCFHALPSPQY 204
>gi|149773456 hypothetical protein LOC643314 [Homo sapiens]
Length = 1427
Score = 26.6 bits (57), Expect = 8.5
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 30 LGTTAKEEMERFWNKNIGSNRPLSPHITIYSWSLPMAMSICHR--------GTGIALSAD 81
L T+K ME+ I SN L ++ P + R + + SA
Sbjct: 54 LNQTSKSTMEKMEGSTISSNGTLGAASNVFESRAPEGKKLDERIIFDALKLSSDVQKSAP 113
Query: 82 VGPRKRP 88
V PR+RP
Sbjct: 114 VPPRRRP 120
>gi|239751592 PREDICTED: hypothetical protein XP_002347924 [Homo
sapiens]
Length = 475
Score = 26.6 bits (57), Expect = 8.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 111 AGSHVKKGGSQHHLPTHYYIHP 132
+G V KG + H P H +IHP
Sbjct: 57 SGLRVNKGAASIHPPIHLHIHP 78
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.138 0.468
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,208,044
Number of Sequences: 37866
Number of extensions: 363458
Number of successful extensions: 960
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 937
Number of HSP's gapped (non-prelim): 38
length of query: 150
length of database: 18,247,518
effective HSP length: 93
effective length of query: 57
effective length of database: 14,725,980
effective search space: 839380860
effective search space used: 839380860
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.