BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|78711820 succinate dehydrogenase complex, subunit C isoform 2 precursor [Homo sapiens] (150 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|78711820 succinate dehydrogenase complex, subunit C isoform 2... 324 2e-89 gi|239749866 PREDICTED: similar to succinate dehydrogenase compl... 290 2e-79 gi|239744168 PREDICTED: similar to succinate dehydrogenase compl... 290 2e-79 gi|4506863 succinate dehydrogenase complex, subunit C isoform 1 ... 171 2e-43 gi|78711822 succinate dehydrogenase complex, subunit C isoform 3... 84 4e-17 gi|155369255 hypothetical protein LOC642502 [Homo sapiens] 84 4e-17 gi|78711824 succinate dehydrogenase complex, subunit C isoform 4... 49 2e-06 gi|28376633 klotho beta [Homo sapiens] 29 1.7 gi|4557375 Kruppel-like factor 9 [Homo sapiens] 28 3.8 gi|195947389 autotaxin isoform 3 preproprotein [Homo sapiens] 28 3.8 gi|91823602 autotaxin isoform 2 preproprotein [Homo sapiens] 28 3.8 gi|91823274 autotaxin isoform 1 preproprotein [Homo sapiens] 28 3.8 gi|153090207 Golgi-localized syntaphilin-related protein isoform... 28 3.8 gi|153090203 Golgi-localized syntaphilin-related protein isoform... 28 3.8 gi|153090201 Golgi-localized syntaphilin-related protein isoform... 28 3.8 gi|153090191 Golgi-localized syntaphilin-related protein isoform... 28 3.8 gi|153090182 Golgi-localized syntaphilin-related protein isoform... 28 3.8 gi|148540145 Golgi-localized syntaphilin-related protein isoform... 28 3.8 gi|153090205 Golgi-localized syntaphilin-related protein isoform... 28 3.8 gi|153090199 Golgi-localized syntaphilin-related protein isoform... 28 3.8 gi|153090197 Golgi-localized syntaphilin-related protein isoform... 28 3.8 gi|153090195 Golgi-localized syntaphilin-related protein isoform... 28 3.8 gi|153090187 Golgi-localized syntaphilin-related protein isoform... 28 3.8 gi|153090185 Golgi-localized syntaphilin-related protein isoform... 28 3.8 gi|239753568 PREDICTED: hypothetical protein [Homo sapiens] 27 5.0 gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 27 5.0 gi|115430259 solute carrier family 39 (zinc transporter), member... 27 6.5 gi|115430255 solute carrier family 39 (zinc transporter), member... 27 6.5 gi|149773456 hypothetical protein LOC643314 [Homo sapiens] 27 8.5 gi|239751592 PREDICTED: hypothetical protein XP_002347924 [Homo ... 27 8.5 >gi|78711820 succinate dehydrogenase complex, subunit C isoform 2 precursor [Homo sapiens] Length = 150 Score = 324 bits (831), Expect = 2e-89 Identities = 150/150 (100%), Positives = 150/150 (100%) Query: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS 60 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS Sbjct: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS 60 Query: 61 WSLPMAMSICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGSYCVVLYGAGSHVKKGGS 120 WSLPMAMSICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGSYCVVLYGAGSHVKKGGS Sbjct: 61 WSLPMAMSICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGSYCVVLYGAGSHVKKGGS 120 Query: 121 QHHLPTHYYIHPSFCLSFLSPAWEKFSLFV 150 QHHLPTHYYIHPSFCLSFLSPAWEKFSLFV Sbjct: 121 QHHLPTHYYIHPSFCLSFLSPAWEKFSLFV 150 >gi|239749866 PREDICTED: similar to succinate dehydrogenase complex, subunit C [Homo sapiens] Length = 150 Score = 290 bits (743), Expect = 2e-79 Identities = 132/150 (88%), Positives = 138/150 (92%) Query: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS 60 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTT K+EMERFWNKN G NRP+SPH+TIYS Sbjct: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTGKQEMERFWNKNTGLNRPVSPHVTIYS 60 Query: 61 WSLPMAMSICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGSYCVVLYGAGSHVKKGGS 120 WSLPMAM+ICH TG AL ADV PRKRPEDSPAIPVWSGCPGSYCVVL AGSH+K GGS Sbjct: 61 WSLPMAMAICHHDTGTALRADVRPRKRPEDSPAIPVWSGCPGSYCVVLCRAGSHMKNGGS 120 Query: 121 QHHLPTHYYIHPSFCLSFLSPAWEKFSLFV 150 QHH+PTHYYIHPSFCLS LSPAWEKFSLFV Sbjct: 121 QHHIPTHYYIHPSFCLSLLSPAWEKFSLFV 150 >gi|239744168 PREDICTED: similar to succinate dehydrogenase complex, subunit C [Homo sapiens] Length = 150 Score = 290 bits (743), Expect = 2e-79 Identities = 132/150 (88%), Positives = 138/150 (92%) Query: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS 60 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTT K+EMERFWNKN G NRP+SPH+TIYS Sbjct: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTGKQEMERFWNKNTGLNRPVSPHVTIYS 60 Query: 61 WSLPMAMSICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGSYCVVLYGAGSHVKKGGS 120 WSLPMAM+ICH TG AL ADV PRKRPEDSPAIPVWSGCPGSYCVVL AGSH+K GGS Sbjct: 61 WSLPMAMAICHHDTGTALRADVRPRKRPEDSPAIPVWSGCPGSYCVVLCRAGSHMKNGGS 120 Query: 121 QHHLPTHYYIHPSFCLSFLSPAWEKFSLFV 150 QHH+PTHYYIHPSFCLS LSPAWEKFSLFV Sbjct: 121 QHHIPTHYYIHPSFCLSLLSPAWEKFSLFV 150 >gi|4506863 succinate dehydrogenase complex, subunit C isoform 1 precursor [Homo sapiens] Length = 169 Score = 171 bits (433), Expect = 2e-43 Identities = 81/82 (98%), Positives = 81/82 (98%) Query: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS 60 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS Sbjct: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS 60 Query: 61 WSLPMAMSICHRGTGIALSADV 82 WSLPMAMSICHRGTGIALSA V Sbjct: 61 WSLPMAMSICHRGTGIALSAGV 82 >gi|78711822 succinate dehydrogenase complex, subunit C isoform 3 precursor [Homo sapiens] Length = 135 Score = 84.0 bits (206), Expect = 4e-17 Identities = 47/82 (57%), Positives = 47/82 (57%), Gaps = 34/82 (41%) Query: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS 60 MAALLLRHVGRHCLRAHFSPQLCIRN Sbjct: 1 MAALLLRHVGRHCLRAHFSPQLCIRN---------------------------------- 26 Query: 61 WSLPMAMSICHRGTGIALSADV 82 WSLPMAMSICHRGTGIALSA V Sbjct: 27 WSLPMAMSICHRGTGIALSAGV 48 >gi|155369255 hypothetical protein LOC642502 [Homo sapiens] Length = 135 Score = 84.0 bits (206), Expect = 4e-17 Identities = 47/82 (57%), Positives = 47/82 (57%), Gaps = 34/82 (41%) Query: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS 60 MAALLLRHVGRHCLRAHFSPQLCIRN Sbjct: 1 MAALLLRHVGRHCLRAHFSPQLCIRN---------------------------------- 26 Query: 61 WSLPMAMSICHRGTGIALSADV 82 WSLPMAMSICHRGTGIALSA V Sbjct: 27 WSLPMAMSICHRGTGIALSAGV 48 >gi|78711824 succinate dehydrogenase complex, subunit C isoform 4 precursor [Homo sapiens] Length = 116 Score = 48.9 bits (115), Expect = 2e-06 Identities = 22/25 (88%), Positives = 23/25 (92%) Query: 58 IYSWSLPMAMSICHRGTGIALSADV 82 + SWSLPMAMSICHRGTGIALSA V Sbjct: 5 LLSWSLPMAMSICHRGTGIALSAGV 29 >gi|28376633 klotho beta [Homo sapiens] Length = 1044 Score = 28.9 bits (63), Expect = 1.7 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 4/85 (4%) Query: 50 RPLSPHITIYSWSLPMAMSICHRG----TGIALSADVGPRKRPEDSPAIPVWSGCPGSYC 105 R + P +T+Y W LP+A+ + G T I + D + W Y Sbjct: 185 RNIEPIVTLYHWDLPLALQEKYGGWKNDTIIDIFNDYATYCFQMFGDRVKYWITIHNPYL 244 Query: 106 VVLYGAGSHVKKGGSQHHLPTHYYI 130 V +G G+ + G + +L Y + Sbjct: 245 VAWHGYGTGMHAPGEKGNLAAVYTV 269 >gi|4557375 Kruppel-like factor 9 [Homo sapiens] Length = 244 Score = 27.7 bits (60), Expect = 3.8 Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 21/85 (24%) Query: 47 GSNRPLSPHITIYSWSLPMAMSICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGSYCV 106 GS+ SP S P +S+ H G+A KR + CP S C Sbjct: 104 GSSPSHSPEERQDPGSAPSPLSLLH--PGVAAKGKHASEKRHK----------CPYSGCG 151 Query: 107 VLYGAGSHVKKGGSQHHLPTHYYIH 131 +YG SH+K HY +H Sbjct: 152 KVYGKSSHLK---------AHYRVH 167 >gi|195947389 autotaxin isoform 3 preproprotein [Homo sapiens] Length = 888 Score = 27.7 bits (60), Expect = 3.8 Identities = 12/24 (50%), Positives = 14/24 (58%) Query: 119 GSQHHLPTHYYIHPSFCLSFLSPA 142 GS +PTHYY + CL F PA Sbjct: 784 GSSIPVPTHYYSIITSCLDFTQPA 807 >gi|91823602 autotaxin isoform 2 preproprotein [Homo sapiens] Length = 863 Score = 27.7 bits (60), Expect = 3.8 Identities = 12/24 (50%), Positives = 14/24 (58%) Query: 119 GSQHHLPTHYYIHPSFCLSFLSPA 142 GS +PTHYY + CL F PA Sbjct: 759 GSSIPVPTHYYSIITSCLDFTQPA 782 >gi|91823274 autotaxin isoform 1 preproprotein [Homo sapiens] Length = 915 Score = 27.7 bits (60), Expect = 3.8 Identities = 12/24 (50%), Positives = 14/24 (58%) Query: 119 GSQHHLPTHYYIHPSFCLSFLSPA 142 GS +PTHYY + CL F PA Sbjct: 811 GSSIPVPTHYYSIITSCLDFTQPA 834 >gi|153090207 Golgi-localized syntaphilin-related protein isoform c [Homo sapiens] Length = 660 Score = 27.7 bits (60), Expect = 3.8 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Query: 68 SICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGS 103 S C TG S V P K P D+ P+ CPGS Sbjct: 70 SFCSDDTGCPSSQSVSPVKTPSDAGNSPI-GFCPGS 104 >gi|153090203 Golgi-localized syntaphilin-related protein isoform b [Homo sapiens] Length = 662 Score = 27.7 bits (60), Expect = 3.8 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Query: 68 SICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGS 103 S C TG S V P K P D+ P+ CPGS Sbjct: 72 SFCSDDTGCPSSQSVSPVKTPSDAGNSPI-GFCPGS 106 >gi|153090201 Golgi-localized syntaphilin-related protein isoform b [Homo sapiens] Length = 662 Score = 27.7 bits (60), Expect = 3.8 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Query: 68 SICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGS 103 S C TG S V P K P D+ P+ CPGS Sbjct: 72 SFCSDDTGCPSSQSVSPVKTPSDAGNSPI-GFCPGS 106 >gi|153090191 Golgi-localized syntaphilin-related protein isoform b [Homo sapiens] Length = 662 Score = 27.7 bits (60), Expect = 3.8 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Query: 68 SICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGS 103 S C TG S V P K P D+ P+ CPGS Sbjct: 72 SFCSDDTGCPSSQSVSPVKTPSDAGNSPI-GFCPGS 106 >gi|153090182 Golgi-localized syntaphilin-related protein isoform b [Homo sapiens] Length = 662 Score = 27.7 bits (60), Expect = 3.8 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Query: 68 SICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGS 103 S C TG S V P K P D+ P+ CPGS Sbjct: 72 SFCSDDTGCPSSQSVSPVKTPSDAGNSPI-GFCPGS 106 >gi|148540145 Golgi-localized syntaphilin-related protein isoform b [Homo sapiens] Length = 662 Score = 27.7 bits (60), Expect = 3.8 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Query: 68 SICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGS 103 S C TG S V P K P D+ P+ CPGS Sbjct: 72 SFCSDDTGCPSSQSVSPVKTPSDAGNSPI-GFCPGS 106 >gi|153090205 Golgi-localized syntaphilin-related protein isoform a [Homo sapiens] Length = 663 Score = 27.7 bits (60), Expect = 3.8 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Query: 68 SICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGS 103 S C TG S V P K P D+ P+ CPGS Sbjct: 73 SFCSDDTGCPSSQSVSPVKTPSDAGNSPI-GFCPGS 107 >gi|153090199 Golgi-localized syntaphilin-related protein isoform a [Homo sapiens] Length = 663 Score = 27.7 bits (60), Expect = 3.8 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Query: 68 SICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGS 103 S C TG S V P K P D+ P+ CPGS Sbjct: 73 SFCSDDTGCPSSQSVSPVKTPSDAGNSPI-GFCPGS 107 >gi|153090197 Golgi-localized syntaphilin-related protein isoform a [Homo sapiens] Length = 663 Score = 27.7 bits (60), Expect = 3.8 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Query: 68 SICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGS 103 S C TG S V P K P D+ P+ CPGS Sbjct: 73 SFCSDDTGCPSSQSVSPVKTPSDAGNSPI-GFCPGS 107 >gi|153090195 Golgi-localized syntaphilin-related protein isoform a [Homo sapiens] Length = 663 Score = 27.7 bits (60), Expect = 3.8 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Query: 68 SICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGS 103 S C TG S V P K P D+ P+ CPGS Sbjct: 73 SFCSDDTGCPSSQSVSPVKTPSDAGNSPI-GFCPGS 107 >gi|153090187 Golgi-localized syntaphilin-related protein isoform a [Homo sapiens] Length = 663 Score = 27.7 bits (60), Expect = 3.8 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Query: 68 SICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGS 103 S C TG S V P K P D+ P+ CPGS Sbjct: 73 SFCSDDTGCPSSQSVSPVKTPSDAGNSPI-GFCPGS 107 >gi|153090185 Golgi-localized syntaphilin-related protein isoform a [Homo sapiens] Length = 663 Score = 27.7 bits (60), Expect = 3.8 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Query: 68 SICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGS 103 S C TG S V P K P D+ P+ CPGS Sbjct: 73 SFCSDDTGCPSSQSVSPVKTPSDAGNSPI-GFCPGS 107 >gi|239753568 PREDICTED: hypothetical protein [Homo sapiens] Length = 352 Score = 27.3 bits (59), Expect = 5.0 Identities = 17/63 (26%), Positives = 25/63 (39%) Query: 62 SLPMAMSICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGSYCVVLYGAGSHVKKGGSQ 121 +LP + R G AL G E IP+ GCP + +G +H G + Sbjct: 37 ALPTPPQVHSRKPGPALRFPSGHHTLRERLAPIPLGRGCPPALVSPAWGLQAHSLCGSPE 96 Query: 122 HHL 124 H+ Sbjct: 97 RHM 99 >gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] Length = 1682 Score = 27.3 bits (59), Expect = 5.0 Identities = 12/26 (46%), Positives = 15/26 (57%) Query: 70 CHRGTGIALSADVGPRKRPEDSPAIP 95 C+RGTG A+S GP + SP P Sbjct: 817 CYRGTGAAVSTRPGPLPTTQYSPGPP 842 >gi|115430259 solute carrier family 39 (zinc transporter), member 4 isoform 1 [Homo sapiens] Length = 622 Score = 26.9 bits (58), Expect = 6.5 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Query: 77 ALSADVGPRKRPEDSPAI---PVWSGCPGSYCVVLYGAGSHVKKGGSQHHLPTHYY 129 A +A P+ D P + V +G PGS VL HV+ G H LP+ Y Sbjct: 124 ARAAGQTPKTACVDIPQLLEEAVGAGAPGSAGGVLAALLDHVRSGSCFHALPSPQY 179 >gi|115430255 solute carrier family 39 (zinc transporter), member 4 isoform 2 [Homo sapiens] Length = 647 Score = 26.9 bits (58), Expect = 6.5 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Query: 77 ALSADVGPRKRPEDSPAI---PVWSGCPGSYCVVLYGAGSHVKKGGSQHHLPTHYY 129 A +A P+ D P + V +G PGS VL HV+ G H LP+ Y Sbjct: 149 ARAAGQTPKTACVDIPQLLEEAVGAGAPGSAGGVLAALLDHVRSGSCFHALPSPQY 204 >gi|149773456 hypothetical protein LOC643314 [Homo sapiens] Length = 1427 Score = 26.6 bits (57), Expect = 8.5 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 8/67 (11%) Query: 30 LGTTAKEEMERFWNKNIGSNRPLSPHITIYSWSLPMAMSICHR--------GTGIALSAD 81 L T+K ME+ I SN L ++ P + R + + SA Sbjct: 54 LNQTSKSTMEKMEGSTISSNGTLGAASNVFESRAPEGKKLDERIIFDALKLSSDVQKSAP 113 Query: 82 VGPRKRP 88 V PR+RP Sbjct: 114 VPPRRRP 120 >gi|239751592 PREDICTED: hypothetical protein XP_002347924 [Homo sapiens] Length = 475 Score = 26.6 bits (57), Expect = 8.5 Identities = 10/22 (45%), Positives = 13/22 (59%) Query: 111 AGSHVKKGGSQHHLPTHYYIHP 132 +G V KG + H P H +IHP Sbjct: 57 SGLRVNKGAASIHPPIHLHIHP 78 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.324 0.138 0.468 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7,208,044 Number of Sequences: 37866 Number of extensions: 363458 Number of successful extensions: 960 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 16 Number of HSP's that attempted gapping in prelim test: 937 Number of HSP's gapped (non-prelim): 38 length of query: 150 length of database: 18,247,518 effective HSP length: 93 effective length of query: 57 effective length of database: 14,725,980 effective search space: 839380860 effective search space used: 839380860 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.