Search of human proteins with 7706427

Search of human proteins with 7706427

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|7706427 cleavage and polyadenylation specific factor 3,
73kDa [Homo sapiens]
         (684 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|7706427 cleavage and polyadenylation specific factor 3, 73kDa...  1376   0.0  
gi|33300633 cleavage and polyadenylation specific factor 3-like ...   339   4e-93
gi|34101288 cleavage and polyadenylation specific factor 2 [Homo...   140   4e-33
gi|223555970 integrator complex subunit 9 isoform 2 [Homo sapiens]     80   6e-15
gi|223555968 integrator complex subunit 9 isoform 1 [Homo sapiens]     73   8e-13
gi|59889558 neurotrophic tyrosine kinase, receptor, type 1 isofo...    38   0.035
gi|4585712 neurotrophic tyrosine kinase, receptor, type 1 isofor...    38   0.035
gi|56118210 neurotrophic tyrosine kinase, receptor, type 1 isofo...    38   0.035
gi|8922122 elaC homolog 1 [Homo sapiens]                               32   1.9  
gi|194294523 intersectin 2 isoform 3 [Homo sapiens]                    32   2.5  
gi|194294521 intersectin 2 isoform 1 [Homo sapiens]                    32   2.5  
gi|194294525 intersectin 2 isoform 2 [Homo sapiens]                    32   2.5  
gi|120587023 down-regulated in metastasis [Homo sapiens]               30   9.7  
gi|89036565 PREDICTED: similar to Temporarily Assigned Gene name...    30   9.7  
gi|57863269 ribosomal RNA processing 1 homolog B [Homo sapiens]        30   9.7  
gi|149363642 coiled-coil domain containing 144A [Homo sapiens]         30   9.7  

>gi|7706427 cleavage and polyadenylation specific factor 3, 73kDa
           [Homo sapiens]
          Length = 684

 Score = 1376 bits (3562), Expect = 0.0
 Identities = 684/684 (100%), Positives = 684/684 (100%)

Query: 1   MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID 60
           MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID
Sbjct: 1   MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID 60

Query: 61  PAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADD 120
           PAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADD
Sbjct: 61  PAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADD 120

Query: 121 MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF 180
           MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF
Sbjct: 121 MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF 180

Query: 181 SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV 240
           SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV
Sbjct: 181 SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV 240

Query: 241 FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ 300
           FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ
Sbjct: 241 FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ 300

Query: 301 NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVE 360
           NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVE
Sbjct: 301 NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVE 360

Query: 361 GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE 420
           GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE
Sbjct: 361 GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE 420

Query: 421 QNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQR 480
           QNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQR
Sbjct: 421 QNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQR 480

Query: 481 VSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLCYQLQKLTGDVEEL 540
           VSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLCYQLQKLTGDVEEL
Sbjct: 481 VSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLCYQLQKLTGDVEEL 540

Query: 541 EIQEKPALKVFKNITVIQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQK 600
           EIQEKPALKVFKNITVIQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQK
Sbjct: 541 EIQEKPALKVFKNITVIQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQK 600

Query: 601 VSKKLEMHVYSKRLEIMLQDIFGEDCVSVKDDSILSVTVDGKTANLNLETRTVECEEGSE 660
           VSKKLEMHVYSKRLEIMLQDIFGEDCVSVKDDSILSVTVDGKTANLNLETRTVECEEGSE
Sbjct: 601 VSKKLEMHVYSKRLEIMLQDIFGEDCVSVKDDSILSVTVDGKTANLNLETRTVECEEGSE 660

Query: 661 DDESLREMVELAAQRLYEALTPVH 684
           DDESLREMVELAAQRLYEALTPVH
Sbjct: 661 DDESLREMVELAAQRLYEALTPVH 684


>gi|33300633 cleavage and polyadenylation specific factor 3-like
           [Homo sapiens]
          Length = 600

 Score =  339 bits (870), Expect = 4e-93
 Identities = 192/506 (37%), Positives = 289/506 (57%), Gaps = 34/506 (6%)

Query: 11  QLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE-----ID 65
           ++ + PLGAGQ+VGRSCI++   G+ +MLDCG+H G       P    I         +D
Sbjct: 3   EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62

Query: 66  LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS-NISADDMLYT 124
            ++ISHFHLDHCGALP+F +   + G  +MTH T+AI   LL DY K++ +   +   +T
Sbjct: 63  CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122

Query: 125 ETDLEESMDKIETINFHEVKEVAG-IKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQ 183
              +++ M K+  ++ H+  +V   ++   Y+AGHVLGAAMF I++    ++YTGD++  
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182

Query: 184 EDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFAL 243
            DRHL AA I   +P++LI ESTY T I + +  RE  F   VH+ V RGG+ LIPVFAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242

Query: 244 GRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPF 303
           GRAQEL ++L+ +W+       +PIY+++ L +K    Y+ ++   N KIRK     N F
Sbjct: 243 GRAQELCILLETFWERMN--LKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMF 300

Query: 304 VFKHISNLKSMDH--FDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEG 361
            FKHI   K+ D    D+ GP VV A+PGM+ +G S ++F  W  +++N VI+ GYCV+G
Sbjct: 301 EFKHI---KAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQG 357

Query: 362 TLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQ 421
           T+   I+S   ++     Q L +KM V+Y+SFSAH D +   + +   +P  V+LVHGE 
Sbjct: 358 TVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEA 417

Query: 422 NEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGE----------KLAKVMGFLA 471
            +M  LK  +        E+ +  + P N E VTL               K     G L 
Sbjct: 418 KKMEFLKQKI------EQELRVNCYMPANGETVTLPTSPSIPVGISLGLLKREMAQGLLP 471

Query: 472 D-KKPEQGQRVSGILVKRNFNYHILS 496
           + KKP   + + G L+ ++ N+ ++S
Sbjct: 472 EAKKP---RLLHGTLIMKDSNFRLVS 494


>gi|34101288 cleavage and polyadenylation specific factor 2 [Homo
           sapiens]
          Length = 782

 Score =  140 bits (353), Expect = 4e-33
 Identities = 99/375 (26%), Positives = 180/375 (48%), Gaps = 22/375 (5%)

Query: 17  LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
           L   QE    C +L+    + +LDCG        D    +D+ID       +ID +L+SH
Sbjct: 10  LSGVQEESALCYLLQVDEFRFLLDCG-------WDEHFSMDIIDSLRKHVHQIDAVLLSH 62

Query: 72  FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEES 131
               H GALP+ + K       + T     + +  + D  +  + + D  L+T  D++ +
Sbjct: 63  PDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVDAA 122

Query: 132 MDKIETINFHEVKEVAG----IKFWCYHAGHVLGAAMFMIEIAGVK-LLYTGDFSRQEDR 186
            DKI+ + F ++  + G    +      AGH++G  ++ I   G + ++Y  DF+ + + 
Sbjct: 123 FDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKREI 182

Query: 187 HLMAAEIPNI-KPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
           HL    +  + +P +LI +S   T++  +R++R+ +    V + +   G  LI V   GR
Sbjct: 183 HLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTAGR 242

Query: 246 AQELLLILDEYWQNHPE-LHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRK--QININNP 302
             EL  +LD+ W+     L    +   ++++   +   ++ V  M+DK+ +  +   NNP
Sbjct: 243 VLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRNNP 302

Query: 303 FVFKHISNLKSMDHFDDI-GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEG 361
           F F+H+S    +     +  P VV+AS   ++ G SR+LF  WC D +N +I+      G
Sbjct: 303 FQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTTPG 362

Query: 362 TLAKHIMSEPEEITT 376
           TLA+ ++  P E  T
Sbjct: 363 TLARFLIDNPSEKIT 377



 Score = 33.1 bits (74), Expect = 0.87
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 380 QKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDND 439
           + + +K  V YI +   +D     + I  +KP  +I+VHG   E ++  A   R +   D
Sbjct: 527 ESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPP-EASQDLAECCRAFGGKD 585

Query: 440 EVHIEVHNPRNTEAV 454
              I+V+ P+  E V
Sbjct: 586 ---IKVYMPKLHETV 597


>gi|223555970 integrator complex subunit 9 isoform 2 [Homo sapiens]
          Length = 637

 Score = 80.1 bits (196), Expect = 6e-15
 Identities = 96/455 (21%), Positives = 168/455 (36%), Gaps = 85/455 (18%)

Query: 27  CIILEFKGRKIMLDCGIH---------------------PGLEGMDALPYID---LIDPA 62
           C +L+FK   IMLDCG+                      PG    D   ++D   LID +
Sbjct: 14  CNVLKFKSTTIMLDCGLDMTSTLNFLPLPLVQSPRLSNLPGWSLKDGNAFLDKTELIDLS 73

Query: 63  EIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVK---------- 112
            +D++LIS++H     ALP+  + T F G  + T  T  I R L+ + V           
Sbjct: 74  TVDVILISNYHC--MMALPYITEHTGFTGTVYATEPTVQIGRLLMEELVNFIERVPKAQS 131

Query: 113 -------------------VSNISADDMLYTETDLEESMDKIETINFHEVKEVAG-IKFW 152
                                 +S     YT  ++  ++ KI+ + + +  E+ G ++  
Sbjct: 132 ASLWKNKDIQRLLPSPLKDAVEVSTWRRCYTMQEVNSALSKIQLVGYSQKIELFGAVQVT 191

Query: 153 CYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIH 212
              +G+ LG++ ++I+    K+ Y    S          +      D+L++     T I 
Sbjct: 192 PLSSGYALGSSNWIIQSHYEKVSYVSGSSLLTTHPQPMDQASLKNSDVLVLTGL--TQIP 249

Query: 213 EKREE-REARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYA 271
               +     FC+ +   V  GG  L+P +  G   +LL  L +Y  +   L  +P+Y+ 
Sbjct: 250 TANPDGMVGEFCSNLALTVRNGGNVLVPCYPSGVIYDLLECLYQYIDS-AGLSSVPLYFI 308

Query: 272 SSLAKKCMAVYQTYVNAM-NDKIRKQININNPFVFKHISNLKSMDHFDDI---------G 321
           S +A   +   Q +   + ++K  K      PF    +     + H+  I          
Sbjct: 309 SPVANSSLEFSQIFAEWLCHNKQSKVYLPEPPFPHAELIQTNKLKHYPSIHGDFSNDFRQ 368

Query: 322 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPE-EITTMSGQ 380
           P VV      ++ G      E W     N V              I +EP+         
Sbjct: 369 PCVVFTGHPSLRFGDVVHFMELWGKSSLNTV--------------IFTEPDFSYLEALAP 414

Query: 381 KLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVI 415
             PL M   Y       ++ Q S+ ++ ++P HV+
Sbjct: 415 YQPLAMKCIYCPIDTRLNFIQVSKLLKEVQPLHVV 449


>gi|223555968 integrator complex subunit 9 isoform 1 [Homo sapiens]
          Length = 658

 Score = 73.2 bits (178), Expect = 8e-13
 Identities = 97/476 (20%), Positives = 168/476 (35%), Gaps = 106/476 (22%)

Query: 27  CIILEFKGRKIMLDCGIH---------------------PGLEGMDA------------- 52
           C +L+FK   IMLDCG+                      PG    D              
Sbjct: 14  CNVLKFKSTTIMLDCGLDMTSTLNFLPLPLVQSPRLSNLPGWSLKDGNAFLDKELKECSG 73

Query: 53  -----------LPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKA 101
                      LP  +LID + +D++LIS++H     ALP+  + T F G  + T  T  
Sbjct: 74  HVFVDSVPEFCLPETELIDLSTVDVILISNYHC--MMALPYITEHTGFTGTVYATEPTVQ 131

Query: 102 IYRWLLSDYVK-----------------------------VSNISADDMLYTETDLEESM 132
           I R L+ + V                                 +S     YT  ++  ++
Sbjct: 132 IGRLLMEELVNFIERVPKAQSASLWKNKDIQRLLPSPLKDAVEVSTWRRCYTMQEVNSAL 191

Query: 133 DKIETINFHEVKEVAG-IKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAA 191
            KI+ + + +  E+ G ++     +G+ LG++ ++I+    K+ Y    S          
Sbjct: 192 SKIQLVGYSQKIELFGAVQVTPLSSGYALGSSNWIIQSHYEKVSYVSGSSLLTTHPQPMD 251

Query: 192 EIPNIKPDILIIESTYGTHIHEKREE-REARFCNTVHDIVNRGGRGLIPVFALGRAQELL 250
           +      D+L++     T I     +     FC+ +   V  GG  L+P +  G   +LL
Sbjct: 252 QASLKNSDVLVLTGL--TQIPTANPDGMVGEFCSNLALTVRNGGNVLVPCYPSGVIYDLL 309

Query: 251 LILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAM-NDKIRKQININNPFVFKHIS 309
             L +Y  +   L  +P+Y+ S +A   +   Q +   + ++K  K      PF    + 
Sbjct: 310 ECLYQYIDS-AGLSSVPLYFISPVANSSLEFSQIFAEWLCHNKQSKVYLPEPPFPHAELI 368

Query: 310 NLKSMDHFDDI---------GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVE 360
               + H+  I          P VV      ++ G      E W     N V        
Sbjct: 369 QTNKLKHYPSIHGDFSNDFRQPCVVFTGHPSLRFGDVVHFMELWGKSSLNTV-------- 420

Query: 361 GTLAKHIMSEPE-EITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVI 415
                 I +EP+           PL M   Y       ++ Q S+ ++ ++P HV+
Sbjct: 421 ------IFTEPDFSYLEALAPYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQPLHVV 470


>gi|59889558 neurotrophic tyrosine kinase, receptor, type 1 isoform
           1 [Homo sapiens]
          Length = 790

 Score = 37.7 bits (86), Expect = 0.035
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 9/134 (6%)

Query: 294 RKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFES--WCTD---- 347
           R +  IN P V      L    HF  +G S +  + G   SGL   + E+  + +D    
Sbjct: 439 RNKFGINRPAVLAPEDGLAMSLHFMTLGGSSLSPTEGK-GSGLQGHIIENPQYFSDACVH 497

Query: 348 --KRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEF 405
             KR  +++     EG   K  ++E   +     + L    ++   S SA  D+Q+ +E 
Sbjct: 498 HIKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAEL 557

Query: 406 IRALKPPHVILVHG 419
           +  L+  H++   G
Sbjct: 558 LTMLQHQHIVRFFG 571


>gi|4585712 neurotrophic tyrosine kinase, receptor, type 1 isoform 2
           [Homo sapiens]
          Length = 796

 Score = 37.7 bits (86), Expect = 0.035
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 9/134 (6%)

Query: 294 RKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFES--WCTD---- 347
           R +  IN P V      L    HF  +G S +  + G   SGL   + E+  + +D    
Sbjct: 445 RNKFGINRPAVLAPEDGLAMSLHFMTLGGSSLSPTEGK-GSGLQGHIIENPQYFSDACVH 503

Query: 348 --KRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEF 405
             KR  +++     EG   K  ++E   +     + L    ++   S SA  D+Q+ +E 
Sbjct: 504 HIKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAEL 563

Query: 406 IRALKPPHVILVHG 419
           +  L+  H++   G
Sbjct: 564 LTMLQHQHIVRFFG 577


>gi|56118210 neurotrophic tyrosine kinase, receptor, type 1 isoform
           3 [Homo sapiens]
          Length = 760

 Score = 37.7 bits (86), Expect = 0.035
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 9/134 (6%)

Query: 294 RKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFES--WCTD---- 347
           R +  IN P V      L    HF  +G S +  + G   SGL   + E+  + +D    
Sbjct: 409 RNKFGINRPAVLAPEDGLAMSLHFMTLGGSSLSPTEGK-GSGLQGHIIENPQYFSDACVH 467

Query: 348 --KRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEF 405
             KR  +++     EG   K  ++E   +     + L    ++   S SA  D+Q+ +E 
Sbjct: 468 HIKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAEL 527

Query: 406 IRALKPPHVILVHG 419
           +  L+  H++   G
Sbjct: 528 LTMLQHQHIVRFFG 541


>gi|8922122 elaC homolog 1 [Homo sapiens]
          Length = 363

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 5/80 (6%)

Query: 24  GRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWF 83
           G S ++L  +G   + DCG     EG         +    I  + I+H H DH   LP  
Sbjct: 20  GASAVVLRCEGECWLFDCG-----EGTQTQLMKSQLKAGRITKIFITHLHGDHFFGLPGL 74

Query: 84  LQKTSFKGRTFMTHATKAIY 103
           L   S +  + ++     IY
Sbjct: 75  LCTISLQSGSMVSKQPIEIY 94


>gi|194294523 intersectin 2 isoform 3 [Homo sapiens]
          Length = 1670

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 14/57 (24%), Positives = 29/57 (50%)

Query: 387 SVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHI 443
           +V + + + +T +Q+ S F R + P  V  +HG+   +  LKA  +  +    + H+
Sbjct: 834 NVSFSNLTVNTSWQKKSAFTRTVSPGSVSPIHGQGQVVENLKAQALCSWTAKKDNHL 890


>gi|194294521 intersectin 2 isoform 1 [Homo sapiens]
          Length = 1697

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 14/57 (24%), Positives = 29/57 (50%)

Query: 387 SVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHI 443
           +V + + + +T +Q+ S F R + P  V  +HG+   +  LKA  +  +    + H+
Sbjct: 861 NVSFSNLTVNTSWQKKSAFTRTVSPGSVSPIHGQGQVVENLKAQALCSWTAKKDNHL 917


>gi|194294525 intersectin 2 isoform 2 [Homo sapiens]
          Length = 1249

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 14/57 (24%), Positives = 29/57 (50%)

Query: 387 SVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHI 443
           +V + + + +T +Q+ S F R + P  V  +HG+   +  LKA  +  +    + H+
Sbjct: 861 NVSFSNLTVNTSWQKKSAFTRTVSPGSVSPIHGQGQVVENLKAQALCSWTAKKDNHL 917


>gi|120587023 down-regulated in metastasis [Homo sapiens]
          Length = 2785

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 16/55 (29%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 187  HLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVF 241
            HL++A +P I   +L + +T  +HI ++RE+ + RF N + ++   G + +  +F
Sbjct: 1110 HLISAYLPKILQILLCMTATV-SHILDQREKIQLRFINPLKNLRRLGIKMVTDIF 1163


>gi|89036565 PREDICTED: similar to Temporarily Assigned Gene name
            family member (tag-184) [Homo sapiens]
          Length = 2785

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 16/55 (29%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 187  HLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVF 241
            HL++A +P I   +L + +T  +HI ++RE+ + RF N + ++   G + +  +F
Sbjct: 1110 HLISAYLPKILQILLCMTATV-SHILDQREKIQLRFINPLKNLRRLGIKMVTDIF 1163


>gi|57863269 ribosomal RNA processing 1 homolog B [Homo sapiens]
          Length = 758

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 20/87 (22%)

Query: 598 VQKVSKKLEMHVYSKRLEIML---QDI----------FGEDCVSVKDDSILSVTVDGKTA 644
           ++  S+K   H   KRL  ++   QD+          F ED  + +DD ILS     K  
Sbjct: 308 LEMTSRKNTPHFNRKRLSKLIKKFQDLSEGSSISQLSFAEDISADEDDQILSQGKHKKKG 367

Query: 645 NLNLETRTVECEEGS-------EDDES 664
           N  LE   +E E+GS       ED ES
Sbjct: 368 NKLLEKTNLEKEKGSRVFCVEEEDSES 394


>gi|149363642 coiled-coil domain containing 144A [Homo sapiens]
          Length = 1427

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 21/88 (23%), Positives = 47/88 (53%), Gaps = 9/88 (10%)

Query: 602 SKKLEMHVYSKRLEIML-------QDIFGEDCVSVKDDSILSVTVDG-KTANLNLETRTV 653
           SK+ E+ +  K++   +       +D+F EDC+  ++ ++L + +D  K  N   E +  
Sbjct: 791 SKQKELEMARKKMNSEISHRHQKEKDLFHEDCMLQEEIALLRLEIDTIKNQNKQKEKKYF 850

Query: 654 E-CEEGSEDDESLREMVELAAQRLYEAL 680
           E  E   E +++L+++++L  + L E +
Sbjct: 851 EDIEAVKEKNDNLQKIIKLNEETLTETI 878


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,573,811
Number of Sequences: 37866
Number of extensions: 1053416
Number of successful extensions: 2244
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2217
Number of HSP's gapped (non-prelim): 22
length of query: 684
length of database: 18,247,518
effective HSP length: 109
effective length of query: 575
effective length of database: 14,120,124
effective search space: 8119071300
effective search space used: 8119071300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.