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Search of human proteins with 7705636
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7705636 golgi transport 1 homolog B [Homo sapiens]
(138 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7705636 golgi transport 1 homolog B [Homo sapiens] 276 4e-75
gi|38348211 golgi transport 1 homolog A [Homo sapiens] 162 8e-41
gi|122937384 transmembrane protein 218 [Homo sapiens] 30 0.63
gi|4757922 cerebellin 1 precursor [Homo sapiens] 29 1.1
gi|116517328 G-protein coupled receptor 115 [Homo sapiens] 28 3.1
gi|9945322 solute carrier family 17, member 7 [Homo sapiens] 27 5.4
gi|189083768 mitofusin 2 [Homo sapiens] 27 5.4
gi|7662004 mitofusin 2 [Homo sapiens] 27 5.4
gi|7705755 plasmolipin [Homo sapiens] 27 5.4
gi|224451040 Yip1 interacting factor homolog B isoform 7 [Homo s... 27 7.0
gi|10834972 CD53 antigen [Homo sapiens] 27 7.0
gi|91106727 CD53 antigen [Homo sapiens] 27 7.0
gi|223633939 solute carrier family 39 (zinc transporter), member... 26 9.2
gi|223633937 solute carrier family 39 (zinc transporter), member... 26 9.2
gi|88758565 potassium voltage-gated channel, shaker-related subf... 26 9.2
gi|119395748 potassium voltage-gated channel subfamily A member ... 26 9.2
gi|14140236 solute carrier family 5 (low affinity glucose cotran... 26 9.2
gi|4826782 potassium voltage-gated channel, shaker-related subfa... 26 9.2
gi|5031819 potassium voltage-gated channel, shaker-related subfa... 26 9.2
>gi|7705636 golgi transport 1 homolog B [Homo sapiens]
Length = 138
Score = 276 bits (706), Expect = 4e-75
Identities = 138/138 (100%), Positives = 138/138 (100%)
Query: 1 MISLTDTQKIGMGLTGFGVFFLFFGMILFFDKALLAIGNVLFVAGLAFVIGLERTFRFFF 60
MISLTDTQKIGMGLTGFGVFFLFFGMILFFDKALLAIGNVLFVAGLAFVIGLERTFRFFF
Sbjct: 1 MISLTDTQKIGMGLTGFGVFFLFFGMILFFDKALLAIGNVLFVAGLAFVIGLERTFRFFF 60
Query: 61 QKHKMKATGFFLGGVFVVLIGWPLIGMIFEIYGFFLLFRGFFPVVVGFIRRVPVLGSLLN 120
QKHKMKATGFFLGGVFVVLIGWPLIGMIFEIYGFFLLFRGFFPVVVGFIRRVPVLGSLLN
Sbjct: 61 QKHKMKATGFFLGGVFVVLIGWPLIGMIFEIYGFFLLFRGFFPVVVGFIRRVPVLGSLLN 120
Query: 121 LPGIRSFVDKVGESNNMV 138
LPGIRSFVDKVGESNNMV
Sbjct: 121 LPGIRSFVDKVGESNNMV 138
>gi|38348211 golgi transport 1 homolog A [Homo sapiens]
Length = 132
Score = 162 bits (410), Expect = 8e-41
Identities = 74/138 (53%), Positives = 103/138 (74%), Gaps = 6/138 (4%)
Query: 1 MISLTDTQKIGMGLTGFGVFFLFFGMILFFDKALLAIGNVLFVAGLAFVIGLERTFRFFF 60
MIS+T+ QKIG+G+TGFG+FF+ FG +L+FD LLA GN+LF+ GL+ +IGL +TF FFF
Sbjct: 1 MISITEWQKIGVGITGFGIFFILFGTLLYFDSVLLAFGNLLFLTGLSLIIGLRKTFWFFF 60
Query: 61 QKHKMKATGFFLGGVFVVLIGWPLIGMIFEIYGFFLLFRGFFPVVVGFIRRVPVLGSLLN 120
Q+HK+K T F LGGV +VL+ WPL+GM E YGFF LF+GFFPV GF LG++ N
Sbjct: 61 QRHKLKGTSFLLGGVVIVLLRWPLLGMFLETYGFFSLFKGFFPVAFGF------LGNVCN 114
Query: 121 LPGIRSFVDKVGESNNMV 138
+P + + ++ +++MV
Sbjct: 115 IPFLGALFRRLQGTSSMV 132
>gi|122937384 transmembrane protein 218 [Homo sapiens]
Length = 115
Score = 30.0 bits (66), Expect = 0.63
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 13 GLTGFGVFFLFFGMILFFDKALLAIGNVLFVAGLAFVIGLERTFRFFFQKHKMKA--TGF 70
G F V FLFFG ++ LL F A + ++ FF ++ + A +
Sbjct: 34 GAARFSVIFLFFGAVIITSVLLLFPRAGEFPAP---EVEVKIVDDFFIGRYVLLAFLSAI 90
Query: 71 FLGGVFVVLIGWPL 84
FLGG+F+VLI + L
Sbjct: 91 FLGGLFLVLIHYVL 104
>gi|4757922 cerebellin 1 precursor [Homo sapiens]
Length = 193
Score = 29.3 bits (64), Expect = 1.1
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 26 MILFFDKALLAIGNVLFVAGLAFVIGLERTFRFFFQKHKMKATGFFLGGVFVVLIGWPLI 85
MI++FD+ L+ IGN F+ + + F F H +K V ++L GWP+I
Sbjct: 82 MIIYFDQVLVNIGNNFDSERSTFIAPRKGIYSFNF--HVVKVYNRQTIQVSLMLNGWPVI 139
>gi|116517328 G-protein coupled receptor 115 [Homo sapiens]
Length = 695
Score = 27.7 bits (60), Expect = 3.1
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 41 LFVAGLAFVIGLERTFRFFFQKHKM-KATGFFLGGVFVVLIGWPLIGMIFEIYGFFLLFR 99
L A + F+IG F Q + M A FF ++ L W L + IYG ++FR
Sbjct: 450 LLTANVWFIIGSH--FNIKAQDYNMCVAVTFFSHFFYLSLFFWMLFKALLIIYGILVIFR 507
Query: 100 GFFP---VVVGF 108
+V+GF
Sbjct: 508 RMMKSRMMVIGF 519
>gi|9945322 solute carrier family 17, member 7 [Homo sapiens]
Length = 560
Score = 26.9 bits (58), Expect = 5.4
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 72 LGGVFVVLIGWPLIGMIFEIYGFFLLFRGFFPVVVGFIRRVPVLGSLLNLPGIRSFVDKV 131
L GV V GW +F +YG F +F F ++V + P L ++ + D +
Sbjct: 224 LAGVLVQYSGW---SSVFYVYGSFGIFWYLFWLLVSY--ESPALHPSISEEERKYIEDAI 278
Query: 132 GESNNMV 138
GES ++
Sbjct: 279 GESAKLM 285
>gi|189083768 mitofusin 2 [Homo sapiens]
Length = 757
Score = 26.9 bits (58), Expect = 5.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 72 LGGVFVVLIGWPLIGMIFEIYGFFLLF 98
+GGV +GW LI + F +YG ++
Sbjct: 621 VGGVVWKAVGWRLIALSFGLYGLLYVY 647
>gi|7662004 mitofusin 2 [Homo sapiens]
Length = 757
Score = 26.9 bits (58), Expect = 5.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 72 LGGVFVVLIGWPLIGMIFEIYGFFLLF 98
+GGV +GW LI + F +YG ++
Sbjct: 621 VGGVVWKAVGWRLIALSFGLYGLLYVY 647
>gi|7705755 plasmolipin [Homo sapiens]
Length = 182
Score = 26.9 bits (58), Expect = 5.4
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 11/66 (16%)
Query: 36 AIGNVLFVAGLAFVIGLERTFRFFFQKHKMKATGFFLGGVFVVLIGWPLIGMIFEIYGFF 95
A G V+FVA +++ + + FQ H MK + ++ WPL+ MIF I
Sbjct: 65 AYGWVMFVAVFLWLVTIVLFNLYLFQLH-MK----------LYMVPWPLVLMIFNISATV 113
Query: 96 LLFRGF 101
L F
Sbjct: 114 LYITAF 119
>gi|224451040 Yip1 interacting factor homolog B isoform 7 [Homo
sapiens]
Length = 291
Score = 26.6 bits (57), Expect = 7.0
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 8/47 (17%)
Query: 71 FLGGVFVVLIGWPLIGMIFEIYGFFL--------LFRGFFPVVVGFI 109
FLG +V +IG L+G++F G++L +F FP++ G +
Sbjct: 222 FLGYKYVGMIGGVLMGLLFGKIGYYLVLGWCCVAIFVFMFPLLPGAV 268
>gi|10834972 CD53 antigen [Homo sapiens]
Length = 219
Score = 26.6 bits (57), Expect = 7.0
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 11 GMGLTGFGVFFLF---FGMILFFDKALLAIGNVLFVAGLAFVIGLERTFRFFFQKHKMKA 67
G + GFG++ L FG +LF + L +GNV + G ++ +++K
Sbjct: 24 GCCILGFGIYLLIHNNFG-VLFHNLPSLTLGNVFVIVGSIIMVVAFLGCMGSIKENKCLL 82
Query: 68 TGFFLGGVFVVLIGWPLIGMIF 89
FF+ + ++L L ++F
Sbjct: 83 MSFFILLLIILLAEVTLAILLF 104
>gi|91106727 CD53 antigen [Homo sapiens]
Length = 219
Score = 26.6 bits (57), Expect = 7.0
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 11 GMGLTGFGVFFLF---FGMILFFDKALLAIGNVLFVAGLAFVIGLERTFRFFFQKHKMKA 67
G + GFG++ L FG +LF + L +GNV + G ++ +++K
Sbjct: 24 GCCILGFGIYLLIHNNFG-VLFHNLPSLTLGNVFVIVGSIIMVVAFLGCMGSIKENKCLL 82
Query: 68 TGFFLGGVFVVLIGWPLIGMIF 89
FF+ + ++L L ++F
Sbjct: 83 MSFFILLLIILLAEVTLAILLF 104
>gi|223633939 solute carrier family 39 (zinc transporter), member 12
isoform 1 [Homo sapiens]
Length = 691
Score = 26.2 bits (56), Expect = 9.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 82 WPLIGMIFEIYGFFLLFRGFFPVV 105
W L+G+I I+GFFL+ + F +V
Sbjct: 446 WKLMGLIGGIHGFFLIEKCFILLV 469
>gi|223633937 solute carrier family 39 (zinc transporter), member 12
isoform 2 [Homo sapiens]
Length = 654
Score = 26.2 bits (56), Expect = 9.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 82 WPLIGMIFEIYGFFLLFRGFFPVV 105
W L+G+I I+GFFL+ + F +V
Sbjct: 446 WKLMGLIGGIHGFFLIEKCFILLV 469
>gi|88758565 potassium voltage-gated channel, shaker-related
subfamily, member 3 [Homo sapiens]
Length = 575
Score = 26.2 bits (56), Expect = 9.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 4 LTDTQKIGMGLTGFGVFFLFFGMILF 29
L T K M G +FFLF G+ILF
Sbjct: 387 LGQTLKASMRELGLLIFFLFIGVILF 412
>gi|119395748 potassium voltage-gated channel subfamily A member 1
[Homo sapiens]
Length = 495
Score = 26.2 bits (56), Expect = 9.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 4 LTDTQKIGMGLTGFGVFFLFFGMILF 29
L T K M G +FFLF G+ILF
Sbjct: 315 LGQTLKASMRELGLLIFFLFIGVILF 340
>gi|14140236 solute carrier family 5 (low affinity glucose
cotransporter), member 4 [Homo sapiens]
Length = 659
Score = 26.2 bits (56), Expect = 9.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 18 GVFFLFFGMILFFDKALLAIG 38
GV +L+F ++LFF L+ +G
Sbjct: 523 GVHYLYFSIVLFFGSMLVTLG 543
>gi|4826782 potassium voltage-gated channel, shaker-related
subfamily, member 2 [Homo sapiens]
Length = 499
Score = 26.2 bits (56), Expect = 9.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 4 LTDTQKIGMGLTGFGVFFLFFGMILF 29
L T K M G +FFLF G+ILF
Sbjct: 317 LGQTLKASMRELGLLIFFLFIGVILF 342
>gi|5031819 potassium voltage-gated channel, shaker-related
subfamily, member 10 [Homo sapiens]
Length = 511
Score = 26.2 bits (56), Expect = 9.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 4 LTDTQKIGMGLTGFGVFFLFFGMILF 29
L T K M G +FFLF G+ILF
Sbjct: 364 LGQTLKASMRELGLLIFFLFIGVILF 389
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.339 0.157 0.488
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,159,485
Number of Sequences: 37866
Number of extensions: 157912
Number of successful extensions: 550
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 537
Number of HSP's gapped (non-prelim): 19
length of query: 138
length of database: 18,247,518
effective HSP length: 91
effective length of query: 47
effective length of database: 14,801,712
effective search space: 695680464
effective search space used: 695680464
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.