Search of human proteins with 76496472

Search of human proteins with 76496472

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|76496472 ribosomal protein L3 isoform b [Homo sapiens]
         (354 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|76496472 ribosomal protein L3 isoform b [Homo sapiens]             721   0.0  
gi|4506649 ribosomal protein L3 isoform a [Homo sapiens]              697   0.0  
gi|4826988 ribosomal protein L3-like [Homo sapiens]                   560   e-160
gi|169215858 PREDICTED: similar to ribosomal protein L3, partial...   253   2e-67
gi|6005862 mitochondrial ribosomal protein L3 [Homo sapiens]           39   0.005
gi|224493919 zinc finger and SCAN domain containing 18 isoform 2...    31   1.9  
gi|224493912 zinc finger and SCAN domain containing 18 isoform 3...    31   1.9  
gi|226371704 zinc finger and SCAN domain containing 18 isoform 3...    31   1.9  
gi|224493905 zinc finger and SCAN domain containing 18 isoform 1...    31   1.9  
gi|28557745 zinc binding alcohol dehydrogenase domain containing...    30   4.3  
gi|7262393 ATP-binding cassette, sub-family D (ALD), member 1 [H...    29   5.6  
gi|239745596 PREDICTED: polycystin 1-like 3 [Homo sapiens]             28   9.5  
gi|5174529 methionine adenosyltransferase II, alpha [Homo sapiens]     28   9.5  
gi|31559825 polycystin 1-like 3 [Homo sapiens]                         28   9.5  
gi|115527120 nebulin [Homo sapiens]                                    28   9.5  

>gi|76496472 ribosomal protein L3 isoform b [Homo sapiens]
          Length = 354

 Score =  721 bits (1860), Expect = 0.0
 Identities = 354/354 (100%), Positives = 354/354 (100%)

Query: 1   MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
           MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV
Sbjct: 1   MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60

Query: 61  DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
           DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK
Sbjct: 61  DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120

Query: 121 NWHKSKKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYK 180
           NWHKSKKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYK
Sbjct: 121 NWHKSKKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYK 180

Query: 181 GVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQ 240
           GVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQ
Sbjct: 181 GVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQ 240

Query: 241 GYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRK 300
           GYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRK
Sbjct: 241 GYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRK 300

Query: 301 SLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKEEGA 354
           SLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKEEGA
Sbjct: 301 SLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKEEGA 354


>gi|4506649 ribosomal protein L3 isoform a [Homo sapiens]
          Length = 403

 Score =  697 bits (1800), Expect = 0.0
 Identities = 354/403 (87%), Positives = 354/403 (87%), Gaps = 49/403 (12%)

Query: 1   MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
           MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV
Sbjct: 1   MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60

Query: 61  DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
           DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK
Sbjct: 61  DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120

Query: 121 NWHKSKKKA-------------------------------------------------HL 131
           NWHKSKKKA                                                 HL
Sbjct: 121 NWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 180

Query: 132 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 191
           MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL
Sbjct: 181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240

Query: 192 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 251
           PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
Sbjct: 241 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 300

Query: 252 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 311
           NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL
Sbjct: 301 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 360

Query: 312 EKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKEEGA 354
           EKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKEEGA
Sbjct: 361 EKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKEEGA 403


>gi|4826988 ribosomal protein L3-like [Homo sapiens]
          Length = 407

 Score =  560 bits (1443), Expect = e-160
 Identities = 273/394 (69%), Positives = 314/394 (79%), Gaps = 49/394 (12%)

Query: 1   MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
           MSHRKFSAPRHG LGFLP KRS RHRGKVK++P+DDPS+PVHLTAFLGYKAGMTH +REV
Sbjct: 1   MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREV 60

Query: 61  DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
            RPG K++K+E VEAVTIVETPP+VVVG+VGYV TPRGLR+FKT+FAEH+SDEC+RRFYK
Sbjct: 61  HRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYK 120

Query: 121 NWHKSKKKA-------------------------------------------------HL 131
           +WHKSKKKA                                                 H+
Sbjct: 121 DWHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHI 180

Query: 132 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 191
           MEIQ+NGGTVAEK+ WA+ RLE+QVPV+ VF Q E+IDVI VTKG+G KGVTSRWHTKKL
Sbjct: 181 MEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKL 240

Query: 192 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 251
           PRKTH+GLRKVACIGAWHPARV  S+ARAGQKGYHHRTE+NKKI++IG+G  ++DGKL+K
Sbjct: 241 PRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHMEDGKLVK 300

Query: 252 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 311
           NNAST YD++ KSI PLGGF HYGEV NDFVMLKGC+ GTKKRV+TLRKSLLV   R+A+
Sbjct: 301 NNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAV 360

Query: 312 EKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKK 345
           E I+LKFIDTTSKFGHGRFQT +EK+AFMGP KK
Sbjct: 361 ENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQKK 394


>gi|169215858 PREDICTED: similar to ribosomal protein L3, partial
           [Homo sapiens]
          Length = 126

 Score =  253 bits (645), Expect = 2e-67
 Identities = 126/126 (100%), Positives = 126/126 (100%)

Query: 229 TEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCV 288
           TEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCV
Sbjct: 1   TEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCV 60

Query: 289 VGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRI 348
           VGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRI
Sbjct: 61  VGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRI 120

Query: 349 AKEEGA 354
           AKEEGA
Sbjct: 121 AKEEGA 126


>gi|6005862 mitochondrial ribosomal protein L3 [Homo sapiens]
          Length = 348

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 8/82 (9%)

Query: 162 FGQDEMIDVIGVTKGKGYKGVTSRWHTKKLP-----RKTHRGLRKVACIGAWHPARVAFS 216
           F   + +DV   T GKG++GV  RW  K  P      KTH   R+   +      RV   
Sbjct: 198 FRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTH---RRPGAVATGDIGRVWPG 254

Query: 217 VARAGQKGYHHRTEINKKIYKI 238
               G+ G  +RTE   K+++I
Sbjct: 255 TKMPGKMGNIYRTEYGLKVWRI 276


>gi|224493919 zinc finger and SCAN domain containing 18 isoform 2
           [Homo sapiens]
          Length = 374

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 11/82 (13%)

Query: 163 GQDEMIDVIGVTKGKGYK----GVTSRWHTKKLPR-KTHRGLRKVACIGAWHPARVAFSV 217
           GQ    D  G+++GK Y     G    W +  +    +H G ++ AC G W     + ++
Sbjct: 261 GQGPGADEPGLSRGKPYACGECGEAFAWLSHLMEHHSSHGGRKRYACQGCWKTFHFSLAL 320

Query: 218 ARAGQKGYHHRTEINKKIYKIG 239
           A       H +T   +K Y +G
Sbjct: 321 AE------HQKTHEKEKSYALG 336


>gi|224493912 zinc finger and SCAN domain containing 18 isoform 3
           [Homo sapiens]
          Length = 510

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 11/82 (13%)

Query: 163 GQDEMIDVIGVTKGKGYK----GVTSRWHTKKLPR-KTHRGLRKVACIGAWHPARVAFSV 217
           GQ    D  G+++GK Y     G    W +  +    +H G ++ AC G W     + ++
Sbjct: 397 GQGPGADEPGLSRGKPYACGECGEAFAWLSHLMEHHSSHGGRKRYACQGCWKTFHFSLAL 456

Query: 218 ARAGQKGYHHRTEINKKIYKIG 239
           A       H +T   +K Y +G
Sbjct: 457 AE------HQKTHEKEKSYALG 472


>gi|226371704 zinc finger and SCAN domain containing 18 isoform 3
           [Homo sapiens]
          Length = 510

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 11/82 (13%)

Query: 163 GQDEMIDVIGVTKGKGYK----GVTSRWHTKKLPR-KTHRGLRKVACIGAWHPARVAFSV 217
           GQ    D  G+++GK Y     G    W +  +    +H G ++ AC G W     + ++
Sbjct: 397 GQGPGADEPGLSRGKPYACGECGEAFAWLSHLMEHHSSHGGRKRYACQGCWKTFHFSLAL 456

Query: 218 ARAGQKGYHHRTEINKKIYKIG 239
           A       H +T   +K Y +G
Sbjct: 457 AE------HQKTHEKEKSYALG 472


>gi|224493905 zinc finger and SCAN domain containing 18 isoform 1
           [Homo sapiens]
          Length = 566

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 11/82 (13%)

Query: 163 GQDEMIDVIGVTKGKGYK----GVTSRWHTKKLPR-KTHRGLRKVACIGAWHPARVAFSV 217
           GQ    D  G+++GK Y     G    W +  +    +H G ++ AC G W     + ++
Sbjct: 453 GQGPGADEPGLSRGKPYACGECGEAFAWLSHLMEHHSSHGGRKRYACQGCWKTFHFSLAL 512

Query: 218 ARAGQKGYHHRTEINKKIYKIG 239
           A       H +T   +K Y +G
Sbjct: 513 AE------HQKTHEKEKSYALG 528


>gi|28557745 zinc binding alcohol dehydrogenase domain containing 2
           [Homo sapiens]
          Length = 377

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 6/66 (9%)

Query: 84  MVVVGIVGYVETPRGLRTFK--TVFAEHISDECK-RRFYKNWHKSKKKA---HLMEIQVN 137
           ++V+G +   +TP GL   K  T+ A+ +      + F+ N + SK +A   HL+E+ V+
Sbjct: 266 LIVIGFISGYQTPTGLSPVKAGTLPAKLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVS 325

Query: 138 GGTVAE 143
           G  V E
Sbjct: 326 GDLVCE 331


>gi|7262393 ATP-binding cassette, sub-family D (ALD), member 1 [Homo
           sapiens]
          Length = 745

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 83  PMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAHLMEIQVNGGTVA 142
           P  + G+V ++ T   LR F   F E +++E +R+    +  S+  A+  EI   GG   
Sbjct: 243 PSAIAGLVVFL-TANVLRAFSPKFGELVAEEARRKGELRYMHSRVVANSEEIAFYGGHEV 301

Query: 143 E 143
           E
Sbjct: 302 E 302


>gi|239745596 PREDICTED: polycystin 1-like 3 [Homo sapiens]
          Length = 1731

 Score = 28.5 bits (62), Expect = 9.5
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 36  DPSKPVHLTAFLG--YKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYV 93
           DP  P+ +T +LG  Y+   TH    +  P  KV +K+  E  T V  P  +  GI  Y 
Sbjct: 550 DPDSPLLMTLYLGFQYQPNCTHFHLNITLPKDKVWQKD--EEYTWVLNPEHLQHGIGTYY 607

Query: 94  ET 95
            T
Sbjct: 608 IT 609


>gi|5174529 methionine adenosyltransferase II, alpha [Homo sapiens]
          Length = 395

 Score = 28.5 bits (62), Expect = 9.5
 Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 9/89 (10%)

Query: 172 GVTKGKGYKGV------TSRWHTKKLPRK--THRGLRKVA-CIGAWHPARVAFSVARAGQ 222
           G   GK Y  V       +RW  K L +     R L +V+  IG  HP  ++       Q
Sbjct: 280 GAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRVLVQVSYAIGVSHPLSISIFHYGTSQ 339

Query: 223 KGYHHRTEINKKIYKIGQGYLIKDGKLIK 251
           K      EI KK + +  G +++D  L K
Sbjct: 340 KSERELLEIVKKNFDLRPGVIVRDLDLKK 368


>gi|31559825 polycystin 1-like 3 [Homo sapiens]
          Length = 1732

 Score = 28.5 bits (62), Expect = 9.5
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 36  DPSKPVHLTAFLG--YKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYV 93
           DP  P+ +T +LG  Y+   TH    +  P  KV +K+  E  T V  P  +  GI  Y 
Sbjct: 550 DPDSPLLMTLYLGFQYQPNCTHFHLNITLPKDKVWQKD--EEYTWVLNPEHLQHGIGTYY 607

Query: 94  ET 95
            T
Sbjct: 608 IT 609


>gi|115527120 nebulin [Homo sapiens]
          Length = 6669

 Score = 28.5 bits (62), Expect = 9.5
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 10/95 (10%)

Query: 115  KRRFYKNWHKSKKKAHLM----EIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDV 170
            KR + + W K K + H+M    EI +       K++++     Q +   +  G D   D 
Sbjct: 3206 KRLYTEAWDKDKTQVHIMPDTPEIML---ARQNKINYSESLYRQAMEEAKKEGYDLRSDA 3262

Query: 171  IGVTKGKGYKGVTSRWHTKKLPRKT---HRGLRKV 202
            I +   K  + + S +  K+  RK    H G R V
Sbjct: 3263 IPIVAAKASRDIASDYKYKEAYRKQLGHHIGARAV 3297


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,517,276
Number of Sequences: 37866
Number of extensions: 588847
Number of successful extensions: 1201
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1190
Number of HSP's gapped (non-prelim): 22
length of query: 354
length of database: 18,247,518
effective HSP length: 103
effective length of query: 251
effective length of database: 14,347,320
effective search space: 3601177320
effective search space used: 3601177320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.