Guide to the Human Genome
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Name: RPL3 Sequence: fasta or formatted (403aa) NCBI GI: 4506649
Description:

ribosomal protein L3 isoform a

Referenced in:

Ribosomes
Small RNAs in RNA Processing

Other entries for this name:
alt prot [354aa] ribosomal protein L3 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         21           1
 C cysteine            1.2          5           1
 D aspartate           4.5         18           2
 E glutamate           5.2         21           2
 F phenylalanine       4.2         17           1
 G glycine             8.2         33           2
 H histidine           4.0         16           2
 I isoleucine          4.7         19           1
 K lysine             13.9         56           3
 L leucine             6.5         26           2
 M methionine          2.5         10           1
 N asparagine          2.2          9           2
 P proline             3.7         15           2
 Q glutamine           3.5         14           2
 R arginine            7.4         30           2
 S serine              4.7         19           2
 T threonine           5.7         23           2
 V valine              8.7         35           3
 W tryptophan          1.2          5           1
 Y tyrosine            2.7         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ribosomal protein L3 isoform a 
RPL3                  0.843   ribosomal protein L3 isoform b 
RPL3L                 0.804   ribosomal protein L3-like 
LOC653881             0.286   PREDICTED: similar to ribosomal protein L3, partial...
MRPL3                 0.018   mitochondrial ribosomal protein L3 
ZSCAN18               0.008   zinc finger and SCAN domain containing 18 isoform 2...
ZSCAN18               0.008   zinc finger and SCAN domain containing 18 isoform 3...
ZSCAN18               0.008   zinc finger and SCAN domain containing 18 isoform 3...
ZSCAN18               0.008   zinc finger and SCAN domain containing 18 isoform 1...
DNAH2                 0.006   dynein heavy chain domain 3 
C13orf38              0.005   hypothetical protein LOC728591 isoform b 
C13orf38              0.005   hypothetical protein LOC728591 isoform b 
MAD1L1                0.005   MAD1-like 1 protein 
MAD1L1                0.005   MAD1-like 1 protein 
MAD1L1                0.005   MAD1-like 1 protein 
ROCK1                 0.005   Rho-associated, coiled-coil containing protein kinase...
C13orf38              0.005   hypothetical protein LOC728591 isoform a 
PLEKHO2               0.005   pleckstrin homology domain containing, family O memb...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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