Guide to the Human Genome
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Name: LOC653881 Sequence: fasta or formatted (126aa) NCBI GI: 169215858
Description:

PREDICTED: similar to ribosomal protein L3, partial

Referenced in:

Ribosomes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0          5           1
 C cysteine            0.8          1           1
 D aspartate           6.3          8           1
 E glutamate           5.6          7           2
 F phenylalanine       4.8          6           1
 G glycine             9.5         12           2
 H histidine           1.6          2           1
 I isoleucine          7.1          9           1
 K lysine             15.9         20           2
 L leucine             9.5         12           2
 M methionine          2.4          3           1
 N asparagine          4.0          5           2
 P proline             1.6          2           1
 Q glutamine           2.4          3           1
 R arginine            4.8          6           2
 S serine              4.0          5           1
 T threonine           7.1          9           2
 V valine              5.6          7           2
 W tryptophan          0.0          0           0
 Y tyrosine            3.2          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to ribosomal protein L3, partial... 
RPL3                  1.000   ribosomal protein L3 isoform a 
RPL3                  1.000   ribosomal protein L3 isoform b 
RPL3L                 0.697   ribosomal protein L3-like 
NEO1                  0.009   neogenin homolog 1 
ALPPL2                0.009   placental-like alkaline phosphatase preproprotein [...
SMC2                  0.009   structural maintenance of chromosomes 2 
SMC2                  0.009   structural maintenance of chromosomes 2 
SMC2                  0.009   structural maintenance of chromosomes 2 
SORT1                 0.004   sortilin 1 preproprotein 
MYO18B                0.004   myosin XVIIIB 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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