Search of human proteins with 72534678

Search of human proteins with 72534678

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|72534678 HERV-H LTR-associating 3 isoform 1 [Homo sapiens]
         (121 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|72534678 HERV-H LTR-associating 3 isoform 1 [Homo sapiens]         249   3e-67
gi|81295796 HERV-H LTR-associating 3 isoform 2 [Homo sapiens]         119   5e-28
gi|81295798 HERV-H LTR-associating 3 isoform 3 [Homo sapiens]         118   1e-27
gi|21361827 methyltransferase like 3 [Homo sapiens]                    27   3.7  
gi|67782311 superkiller viralicidic activity 2-like homolog [Hom...    27   4.8  
gi|6005900 transcription factor Dp-1 [Homo sapiens]                    26   6.3  
gi|34594669 HCCA2 protein [Homo sapiens]                               26   6.3  
gi|7705266 NCK interacting protein with SH3 domain isoform 1 [Ho...    26   8.2  
gi|37577148 NCK interacting protein with SH3 domain isoform 2 [H...    26   8.2  
gi|91823048 kallikrein 14 preproprotein [Homo sapiens]                 26   8.2  

>gi|72534678 HERV-H LTR-associating 3 isoform 1 [Homo sapiens]
          Length = 121

 Score =  249 bits (637), Expect = 3e-67
 Identities = 121/121 (100%), Positives = 121/121 (100%)

Query: 1   MFGACYKQPLKPSGSEPPAEECRMTPRHAGCDVTEMQRILSQPTFTEHLLRAVCLVNGKG 60
           MFGACYKQPLKPSGSEPPAEECRMTPRHAGCDVTEMQRILSQPTFTEHLLRAVCLVNGKG
Sbjct: 1   MFGACYKQPLKPSGSEPPAEECRMTPRHAGCDVTEMQRILSQPTFTEHLLRAVCLVNGKG 60

Query: 61  SLSRPQESILGSLARKNLRRIHRVSLVMCVRPLSPSKAIISPVTCMYTSRWPEASEESQK 120
           SLSRPQESILGSLARKNLRRIHRVSLVMCVRPLSPSKAIISPVTCMYTSRWPEASEESQK
Sbjct: 61  SLSRPQESILGSLARKNLRRIHRVSLVMCVRPLSPSKAIISPVTCMYTSRWPEASEESQK 120

Query: 121 K 121
           K
Sbjct: 121 K 121


>gi|81295796 HERV-H LTR-associating 3 isoform 2 [Homo sapiens]
          Length = 114

 Score =  119 bits (298), Expect = 5e-28
 Identities = 54/54 (100%), Positives = 54/54 (100%)

Query: 1  MFGACYKQPLKPSGSEPPAEECRMTPRHAGCDVTEMQRILSQPTFTEHLLRAVC 54
          MFGACYKQPLKPSGSEPPAEECRMTPRHAGCDVTEMQRILSQPTFTEHLLRAVC
Sbjct: 1  MFGACYKQPLKPSGSEPPAEECRMTPRHAGCDVTEMQRILSQPTFTEHLLRAVC 54


>gi|81295798 HERV-H LTR-associating 3 isoform 3 [Homo sapiens]
          Length = 76

 Score =  118 bits (295), Expect = 1e-27
 Identities = 58/76 (76%), Positives = 62/76 (81%), Gaps = 1/76 (1%)

Query: 1  MFGACYKQPLKPSGSEPPAEECRMTPRHAGCDVTEMQRILSQPTFTEHLLRAVCLVNGKG 60
          MFGACYKQPLKPSGSEPPAEECRMTPRHAGCDVTEMQRILSQPTFTEHLLRAV L   +G
Sbjct: 1  MFGACYKQPLKPSGSEPPAEECRMTPRHAGCDVTEMQRILSQPTFTEHLLRAV-LSTERG 59

Query: 61 SLSRPQESILGSLARK 76
              P+ + L  L  +
Sbjct: 60 PYPDPKRAFLDLLQER 75


>gi|21361827 methyltransferase like 3 [Homo sapiens]
          Length = 580

 Score = 26.9 bits (58), Expect = 3.7
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 2   FGACYKQPLKPSGSEPPAEECRMTPRHAGCDV-TEMQRILSQPTFTEHLLRAV 53
           F +     L  S SEP  E  + + +HA  DV  E++ +L+Q +  E   + V
Sbjct: 190 FASSLVSGLNSSASEPAKEPAKKSRKHAASDVDLEIESLLNQQSTKEQQSKKV 242


>gi|67782311 superkiller viralicidic activity 2-like homolog [Homo
           sapiens]
          Length = 1246

 Score = 26.6 bits (57), Expect = 4.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 12  PSGSEPPAEECRMTPRHAGCDVTEMQRILSQPTF 45
           P   EPP++E    P  A   V +  R++ QP F
Sbjct: 272 PEAPEPPSQEQWAIPVDATSPVGDFYRLIPQPAF 305


>gi|6005900 transcription factor Dp-1 [Homo sapiens]
          Length = 410

 Score = 26.2 bits (56), Expect = 6.3
 Identities = 18/52 (34%), Positives = 26/52 (50%)

Query: 59  KGSLSRPQESILGSLARKNLRRIHRVSLVMCVRPLSPSKAIISPVTCMYTSR 110
           K   S+ QE IL  +A KNL + +R +     RP  P+  I  P   + TS+
Sbjct: 217 KQKQSQLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHLPFIIVNTSK 268


>gi|34594669 HCCA2 protein [Homo sapiens]
          Length = 237

 Score = 26.2 bits (56), Expect = 6.3
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 7  KQPLKPSGSEPPAEECR--MTPRHAGCDVTEMQ 37
          K   KP+G +P AEE +  + P H    +T+ Q
Sbjct: 7  KSKAKPNGKKPAAEERKAYLEPEHTKARITDFQ 39


>gi|7705266 NCK interacting protein with SH3 domain isoform 1 [Homo
           sapiens]
          Length = 722

 Score = 25.8 bits (55), Expect = 8.2
 Identities = 29/98 (29%), Positives = 39/98 (39%), Gaps = 10/98 (10%)

Query: 9   PLKPSGSEPPAEECRMTPRHAGCDVTEMQRILSQPTFTEHLLRAVCLVNGKGSLSRPQES 68
           P K S  EPPAEE   T   +  D  E    LS  T  E           + ++ R   +
Sbjct: 262 PSKASAPEPPAEEEVATGTTSASDDLEALGTLSLGTTEEK-------AAAEAAVPRTIGA 314

Query: 69  ILGSLARKNLRRIH---RVSLVMCVRPLSPSKAIISPV 103
            L  L R+N    H   RV++ + V  +  S    SPV
Sbjct: 315 ELMELVRRNTGLSHELCRVAIGIIVGHIQASVPASSPV 352


>gi|37577148 NCK interacting protein with SH3 domain isoform 2 [Homo
           sapiens]
          Length = 715

 Score = 25.8 bits (55), Expect = 8.2
 Identities = 29/98 (29%), Positives = 39/98 (39%), Gaps = 10/98 (10%)

Query: 9   PLKPSGSEPPAEECRMTPRHAGCDVTEMQRILSQPTFTEHLLRAVCLVNGKGSLSRPQES 68
           P K S  EPPAEE   T   +  D  E    LS  T  E           + ++ R   +
Sbjct: 255 PSKASAPEPPAEEEVATGTTSASDDLEALGTLSLGTTEEK-------AAAEAAVPRTIGA 307

Query: 69  ILGSLARKNLRRIH---RVSLVMCVRPLSPSKAIISPV 103
            L  L R+N    H   RV++ + V  +  S    SPV
Sbjct: 308 ELMELVRRNTGLSHELCRVAIGIIVGHIQASVPASSPV 345


>gi|91823048 kallikrein 14 preproprotein [Homo sapiens]
          Length = 267

 Score = 25.8 bits (55), Expect = 8.2
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 46  TEHLLRAVCLVNGKGSLSRPQESILGSLARKNLRRIHRVSLVMCVRPLSPSKAIISPVTC 105
           T+ +LR V  V      SR  ++ L  L  +   RI R      VRP+  ++A  SP T 
Sbjct: 104 TQQVLRVVRQVTHPNYNSRTHDNDLMLLQLQQPARIGRA-----VRPIEVTQACASPGTS 158

Query: 106 MYTSRW 111
              S W
Sbjct: 159 CRVSGW 164


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.131    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,402,349
Number of Sequences: 37866
Number of extensions: 226718
Number of successful extensions: 578
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 573
Number of HSP's gapped (non-prelim): 10
length of query: 121
length of database: 18,247,518
effective HSP length: 89
effective length of query: 32
effective length of database: 14,877,444
effective search space: 476078208
effective search space used: 476078208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.