Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TBK1 Sequence: fasta or formatted (729aa) NCBI GI: 7019547
Description:

TANK-binding kinase 1

Referenced in:

Interferon
NF-kappaB Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         36           2
 C cysteine            1.5         11           1
 D aspartate           4.7         34           2
 E glutamate           8.9         65           3
 F phenylalanine       3.8         28           2
 G glycine             5.8         42           2
 H histidine           3.6         26           1
 I isoleucine          6.7         49           2
 K lysine              7.5         55           2
 L leucine            10.6         77           3
 M methionine          3.0         22           1
 N asparagine          4.1         30           2
 P proline             3.3         24           1
 Q glutamine           3.8         28           2
 R arginine            4.8         35           2
 S serine              5.8         42           3
 T threonine           6.2         45           3
 V valine              6.2         45           2
 W tryptophan          1.0          7           1
 Y tyrosine            3.8         28           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TANK-binding kinase 1 
IKBKE                 0.440   IKK-related kinase epsilon 
IKBKB                 0.077   inhibitor of nuclear factor kappa B kinase beta subu...
CHUK                  0.071   conserved helix-loop-helix ubiquitous kinase 
ULK1                  0.061   Unc-51-like kinase 1 
ULK2                  0.059   unc-51-like kinase 2 
ULK2                  0.059   unc-51-like kinase 2 
CAMK1G                0.058   calcium/calmodulin-dependent protein kinase IG [Homo...
DCLK3                 0.058   doublecortin-like kinase 3 
MARK1                 0.055   MAP/microtubule affinity-regulating kinase 1 
MARK4                 0.055   MAP/microtubule affinity-regulating kinase 4 
HUNK                  0.053   hormonally upregulated Neu-associated kinase 
MARK3                 0.052   MAP/microtubule affinity-regulating kinase 3 isofor...
MARK3                 0.052   MAP/microtubule affinity-regulating kinase 3 isofor...
MARK3                 0.052   MAP/microtubule affinity-regulating kinase 3 isofor...
MARK3                 0.052   MAP/microtubule affinity-regulating kinase 3 isoform...
MARK2                 0.051   MAP/microtubule affinity-regulating kinase 2 isofor...
MARK2                 0.051   MAP/microtubule affinity-regulating kinase 2 isofor...
MARK2                 0.051   MAP/microtubule affinity-regulating kinase 2 isofor...
MARK2                 0.051   MAP/microtubule affinity-regulating kinase 2 isofor...
MARK2                 0.051   MAP/microtubule affinity-regulating kinase 2 isoform...
YSK4                  0.051   Yeast Sps1/Ste20-related kinase 4 isoform 1 
YSK4                  0.051   Yeast Sps1/Ste20-related kinase 4 isoform 2 
PRKD1                 0.050   protein kinase D1 
STK36                 0.049   serine/threonine kinase 36 
RPS6KA2               0.049   ribosomal protein S6 kinase, 90kDa, polypeptide 2 is...
RPS6KA2               0.049   ribosomal protein S6 kinase, 90kDa, polypeptide 2 is...
CDKL3                 0.049   cyclin-dependent kinase-like 3 isoform 1 
CDKL3                 0.049   cyclin-dependent kinase-like 3 isoform 2 
PRKD3                 0.049   protein kinase D3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press