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Search of human proteins with 70166645
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|70166645 pseudouridine synthase 1 isoform 1 [Homo sapiens]
(427 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|70166645 pseudouridine synthase 1 isoform 1 [Homo sapiens] 880 0.0
gi|70166634 pseudouridine synthase 1 isoform 2 [Homo sapiens] 822 0.0
gi|70166599 pseudouridine synthase 1 isoform 2 [Homo sapiens] 822 0.0
gi|199559785 pseudouridylate synthase 3 [Homo sapiens] 78 2e-14
gi|23503259 pseudouridylate synthase-like 1 [Homo sapiens] 59 8e-09
gi|239754911 PREDICTED: hypothetical protein [Homo sapiens] 37 0.034
gi|239749451 PREDICTED: hypothetical protein [Homo sapiens] 37 0.034
gi|239743581 PREDICTED: hypothetical protein [Homo sapiens] 37 0.034
gi|142976757 immediate early response 5 [Homo sapiens] 34 0.22
gi|197927452 dynein, axonemal, heavy chain 1 [Homo sapiens] 34 0.29
gi|222831660 family with sequence similarity 171, member A2 [Hom... 33 0.49
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 32 1.1
gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo ... 32 1.1
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 32 1.1
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 32 1.1
gi|10440566 leucine zipper, putative tumor suppressor 1 [Homo sa... 32 1.1
gi|211971095 zygote arrest 1-like [Homo sapiens] 31 1.9
gi|197313700 torsin family 2, member A isoform c [Homo sapiens] 31 1.9
gi|169206224 PREDICTED: hypothetical protein [Homo sapiens] 31 2.5
gi|169206527 PREDICTED: hypothetical protein [Homo sapiens] 31 2.5
gi|113424187 PREDICTED: hypothetical protein [Homo sapiens] 31 2.5
gi|239508745 PREDICTED: hypothetical protein [Homo sapiens] 31 2.5
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 30 3.2
gi|4885075 atonal homolog 1 [Homo sapiens] 30 3.2
gi|24234729 semaphorin 6D isoform 1 precursor [Homo sapiens] 30 4.2
gi|24234741 semaphorin 6D isoform 4 precursor [Homo sapiens] 30 4.2
gi|24234738 semaphorin 6D isoform 3 precursor [Homo sapiens] 30 4.2
gi|24234735 semaphorin 6D isoform 2 precursor [Homo sapiens] 30 4.2
gi|50348617 mitochondrial tumor suppressor 1 isoform 2 [Homo sap... 30 4.2
gi|171543895 ataxin 2 [Homo sapiens] 30 4.2
>gi|70166645 pseudouridine synthase 1 isoform 1 [Homo sapiens]
Length = 427
Score = 880 bits (2274), Expect = 0.0
Identities = 427/427 (100%), Positives = 427/427 (100%)
Query: 1 MGLQLRALLGAFGRWTLRLGPRPSCSPRMAGNAEPPPAGAACPQDRRSCSGRAGGDRVWE 60
MGLQLRALLGAFGRWTLRLGPRPSCSPRMAGNAEPPPAGAACPQDRRSCSGRAGGDRVWE
Sbjct: 1 MGLQLRALLGAFGRWTLRLGPRPSCSPRMAGNAEPPPAGAACPQDRRSCSGRAGGDRVWE 60
Query: 61 DGEHPAKKLKSGGDEERREKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSAL 120
DGEHPAKKLKSGGDEERREKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSAL
Sbjct: 61 DGEHPAKKLKSGGDEERREKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSAL 120
Query: 121 VRSGCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRI 180
VRSGCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRI
Sbjct: 121 VRSGCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRI 180
Query: 181 LGLKRVTGGFNSKNRCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYK 240
LGLKRVTGGFNSKNRCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYK
Sbjct: 181 LGLKRVTGGFNSKNRCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYK 240
Query: 241 GTHNFHNFTSQKGPQDPSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGL 300
GTHNFHNFTSQKGPQDPSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGL
Sbjct: 241 GTHNFHNFTSQKGPQDPSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGL 300
Query: 301 VVAIVKGYAPESVLERSWGTEKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWAQ 360
VVAIVKGYAPESVLERSWGTEKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWAQ
Sbjct: 301 VVAIVKGYAPESVLERSWGTEKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWAQ 360
Query: 361 EEGKVAAFKEEHIYPTIIGTERDERSMAQWLSTLPIHNFSATALTAGGTGAKVPSPLEGS 420
EEGKVAAFKEEHIYPTIIGTERDERSMAQWLSTLPIHNFSATALTAGGTGAKVPSPLEGS
Sbjct: 361 EEGKVAAFKEEHIYPTIIGTERDERSMAQWLSTLPIHNFSATALTAGGTGAKVPSPLEGS 420
Query: 421 EGDGDTD 427
EGDGDTD
Sbjct: 421 EGDGDTD 427
>gi|70166634 pseudouridine synthase 1 isoform 2 [Homo sapiens]
Length = 399
Score = 822 bits (2123), Expect = 0.0
Identities = 399/399 (100%), Positives = 399/399 (100%)
Query: 29 MAGNAEPPPAGAACPQDRRSCSGRAGGDRVWEDGEHPAKKLKSGGDEERREKPPKRKIVL 88
MAGNAEPPPAGAACPQDRRSCSGRAGGDRVWEDGEHPAKKLKSGGDEERREKPPKRKIVL
Sbjct: 1 MAGNAEPPPAGAACPQDRRSCSGRAGGDRVWEDGEHPAKKLKSGGDEERREKPPKRKIVL 60
Query: 89 LMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKG 148
LMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKG
Sbjct: 61 LMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKG 120
Query: 149 VSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPTF 208
VSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPTF
Sbjct: 121 VSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPTF 180
Query: 209 AFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQDPSACRYILEMYC 268
AFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQDPSACRYILEMYC
Sbjct: 181 AFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQDPSACRYILEMYC 240
Query: 269 EEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTEKVDVPKA 328
EEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTEKVDVPKA
Sbjct: 241 EEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTEKVDVPKA 300
Query: 329 PGLGLVLERVHFEKYNQRFGNDGLHEPLDWAQEEGKVAAFKEEHIYPTIIGTERDERSMA 388
PGLGLVLERVHFEKYNQRFGNDGLHEPLDWAQEEGKVAAFKEEHIYPTIIGTERDERSMA
Sbjct: 301 PGLGLVLERVHFEKYNQRFGNDGLHEPLDWAQEEGKVAAFKEEHIYPTIIGTERDERSMA 360
Query: 389 QWLSTLPIHNFSATALTAGGTGAKVPSPLEGSEGDGDTD 427
QWLSTLPIHNFSATALTAGGTGAKVPSPLEGSEGDGDTD
Sbjct: 361 QWLSTLPIHNFSATALTAGGTGAKVPSPLEGSEGDGDTD 399
>gi|70166599 pseudouridine synthase 1 isoform 2 [Homo sapiens]
Length = 399
Score = 822 bits (2123), Expect = 0.0
Identities = 399/399 (100%), Positives = 399/399 (100%)
Query: 29 MAGNAEPPPAGAACPQDRRSCSGRAGGDRVWEDGEHPAKKLKSGGDEERREKPPKRKIVL 88
MAGNAEPPPAGAACPQDRRSCSGRAGGDRVWEDGEHPAKKLKSGGDEERREKPPKRKIVL
Sbjct: 1 MAGNAEPPPAGAACPQDRRSCSGRAGGDRVWEDGEHPAKKLKSGGDEERREKPPKRKIVL 60
Query: 89 LMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKG 148
LMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKG
Sbjct: 61 LMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKG 120
Query: 149 VSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPTF 208
VSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPTF
Sbjct: 121 VSAAGQVVSLKVWLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPTF 180
Query: 209 AFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQDPSACRYILEMYC 268
AFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQDPSACRYILEMYC
Sbjct: 181 AFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQDPSACRYILEMYC 240
Query: 269 EEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTEKVDVPKA 328
EEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTEKVDVPKA
Sbjct: 241 EEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTEKVDVPKA 300
Query: 329 PGLGLVLERVHFEKYNQRFGNDGLHEPLDWAQEEGKVAAFKEEHIYPTIIGTERDERSMA 388
PGLGLVLERVHFEKYNQRFGNDGLHEPLDWAQEEGKVAAFKEEHIYPTIIGTERDERSMA
Sbjct: 301 PGLGLVLERVHFEKYNQRFGNDGLHEPLDWAQEEGKVAAFKEEHIYPTIIGTERDERSMA 360
Query: 389 QWLSTLPIHNFSATALTAGGTGAKVPSPLEGSEGDGDTD 427
QWLSTLPIHNFSATALTAGGTGAKVPSPLEGSEGDGDTD
Sbjct: 361 QWLSTLPIHNFSATALTAGGTGAKVPSPLEGSEGDGDTD 399
>gi|199559785 pseudouridylate synthase 3 [Homo sapiens]
Length = 481
Score = 77.8 bits (190), Expect = 2e-14
Identities = 78/295 (26%), Positives = 115/295 (38%), Gaps = 78/295 (26%)
Query: 83 KRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRC 142
+R + L +AY G GY G ++ TIE+ L AL ++ + E + ++ RC
Sbjct: 62 RRHVALRIAYMGWGYQGFASQENTNN--TIEEKLFEALTKTRLV-----ESRQTSNYHRC 114
Query: 143 ARTDKGVSAAGQVVSLKVWL-------IDDILEK---------------INSHLPSHIRI 180
RTDKGVSA GQV+SL + +D K +N LP IRI
Sbjct: 115 GRTDKGVSAFGQVISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRI 174
Query: 181 LGLKRVTGGFNSKNRCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYK 240
L V F+++ C RTY Y P D D+ Y Y
Sbjct: 175 LAWAPVEPSFSARFSCLERTYRYFFP-----RADLDIVTMDYAAQK------------YV 217
Query: 241 GTHNFHNFTS-------------------QKGPQDPSACRYILEMYCEEPFVREGLEFAV 281
GTH+F N Q Q P R+ +EPF +
Sbjct: 218 GTHDFRNLCKMDVANGVINFQRTILSAQVQLVGQSPGEGRW------QEPF-----QLCQ 266
Query: 282 IRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTEKVDVPKAPGLGLVLE 336
V GQ+F+ HQ+R M+ ++ I +G +++ EK P+ P + +E
Sbjct: 267 FEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEK--NPQKPQYSMAVE 319
>gi|23503259 pseudouridylate synthase-like 1 [Homo sapiens]
Length = 303
Score = 58.9 bits (141), Expect = 8e-09
Identities = 71/281 (25%), Positives = 116/281 (41%), Gaps = 34/281 (12%)
Query: 83 KRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRC 142
+ + ++ Y G ++G+ G+ + +++ L A R + + F
Sbjct: 11 RARYLVYFQYVGTDFNGVAAVRGTQRAVGVQNYLEEAAERLNSV--------EPVRFTIS 62
Query: 143 ARTDKGVSAAGQVVSLKV--------WLIDDILEKINSHLPSH-IRILGLKRVTGGFNSK 193
+RTD GV A L V + + + E +N+HL IR+L RV F+++
Sbjct: 63 SRTDAGVHALSNAAHLDVQRRSGRPPFPPEVLAEALNTHLRHPAIRVLRAFRVPSDFHAR 122
Query: 194 NRCDARTYCYLLPTFAFAHKDRDVQDET--YRLSAETLQQVNRLLACYK--GTHNFHNFT 249
+ +RTY Y L T + V + + L A+ L V A GTH+F F
Sbjct: 123 HAATSRTYLYRLATGCHRRDELPVFERNLCWTLPADCLDMVAMQEAAQHLLGTHDFSAFQ 182
Query: 250 SQKGPQDPSACRYILEMYCE--------EPFVREGLEFAVIRVKGQSFMMHQIRKMVGLV 301
S P PS R + + P L F + + QSF+ Q+R+M ++
Sbjct: 183 SAGSPV-PSPVRTLRRVSVSPGQASPLVTPEESRKLRFWNLEFESQSFLYRQVRRMTAVL 241
Query: 302 VAIVKG-YAP---ESVLERSWGTEKVDVPKAPGLGLVLERV 338
VA+ G AP +++LE K AP GL L+ V
Sbjct: 242 VAVGLGALAPAQVKTILESQDPLGKHQTRVAPAHGLFLKSV 282
>gi|239754911 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 37.0 bits (84), Expect = 0.034
Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 18 RLGPRPSCSPRMAGNAEPPPAGAACPQDRRSCSGRAGGDRVWEDG 62
RL P S PR G PPP +C RRSC+ R GG W G
Sbjct: 136 RLCPERSAPPRRRG---PPPLPTSCHWARRSCALRRGGAASWRRG 177
>gi|239749451 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 37.0 bits (84), Expect = 0.034
Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 18 RLGPRPSCSPRMAGNAEPPPAGAACPQDRRSCSGRAGGDRVWEDG 62
RL P S PR G PPP +C RRSC+ R GG W G
Sbjct: 136 RLCPERSAPPRRRG---PPPLPTSCHWARRSCALRRGGAASWRRG 177
>gi|239743581 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 37.0 bits (84), Expect = 0.034
Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 18 RLGPRPSCSPRMAGNAEPPPAGAACPQDRRSCSGRAGGDRVWEDG 62
RL P S PR G PPP +C RRSC+ R GG W G
Sbjct: 136 RLCPERSAPPRRRG---PPPLPTSCHWARRSCALRRGGAASWRRG 177
>gi|142976757 immediate early response 5 [Homo sapiens]
Length = 327
Score = 34.3 bits (77), Expect = 0.22
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 25 CSPRMAGNAEPPPAGAACPQDRRSCSGRAGGDRVW--EDGEHPAKKLK-------SGGDE 75
C+P+ A + EPP A CP R+ C+ GG G P KK + SGG++
Sbjct: 199 CAPQPAED-EPPAPPAVCP--RKRCAAGVGGGPAGCPAPGSTPLKKPRRNLEQPPSGGED 255
Query: 76 ERREKPPKRKIVLLMAYSGKGYHGMQR 102
+ E+ + L++ G + G+ R
Sbjct: 256 DDAEEMETGNVANLISIFGSSFSGLLR 282
>gi|197927452 dynein, axonemal, heavy chain 1 [Homo sapiens]
Length = 4265
Score = 33.9 bits (76), Expect = 0.29
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 296 KMVGLVVAIVKGYAPESVLERSWGTEKVDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEP 355
K+V V I+KG P+ V GT KVD PG GL+ + HF + +F D + +
Sbjct: 2949 KLVIEAVCIMKGIKPKKVPGEKPGT-KVDDYWEPGKGLLQDPGHFLESLFKFDKDNIGDV 3007
Query: 356 LDWAQEEGKVAAFKEEHIYPTIIGTERDERSMAQWLSTLPIHNFSATAL 404
+ A + EE TI + S+ QW+ + ++F A A+
Sbjct: 3008 VIKAIQP---YIDNEEFQPATIAKVSKACTSICQWVRAMHKYHFVAKAV 3053
>gi|222831660 family with sequence similarity 171, member A2 [Homo
sapiens]
Length = 826
Score = 33.1 bits (74), Expect = 0.49
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 369 KEEHIYPTIIGTERDERSMAQWLSTLPIHNFSATALTAGGTGAKVPSPL 417
+E +P +GTE WL +P+ S LT GT + P+
Sbjct: 183 QEMRAFPAFLGTEASSSGNGSWLELMPLTAVSVHLLTGNGTEVPLSGPI 231
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 32.0 bits (71), Expect = 1.1
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 20 GPRPSCSPRMAGNAEPPPAGAACPQDRRSCSGRAG-GDRVWEDGEHPAKKLKSGG 73
GPRP CS A A P AA R+ SG +G G R + A+ ++GG
Sbjct: 125 GPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGG 179
>gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo
sapiens]
Length = 209
Score = 32.0 bits (71), Expect = 1.1
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 20 GPRPSCSPRMAGNAEPPPAGAACPQDRRSCSGRAG-GDRVWEDGEHPAKKLKSGG 73
GPRP CS A A P AA R+ SG +G G R + A+ ++GG
Sbjct: 125 GPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGG 179
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 32.0 bits (71), Expect = 1.1
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 20 GPRPSCSPRMAGNAEPPPAGAACPQDRRSCSGRAG-GDRVWEDGEHPAKKLKSGG 73
GPRP CS A A P AA R+ SG +G G R + A+ ++GG
Sbjct: 125 GPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGG 179
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 32.0 bits (71), Expect = 1.1
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 20 GPRPSCSPRMAGNAEPPPAGAACPQDRRSCSGRAG-GDRVWEDGEHPAKKLKSGG 73
GPRP CS A A P AA R+ SG +G G R + A+ ++GG
Sbjct: 125 GPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGG 179
>gi|10440566 leucine zipper, putative tumor suppressor 1 [Homo
sapiens]
Length = 596
Score = 32.0 bits (71), Expect = 1.1
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 11/128 (8%)
Query: 294 IRKMVGLVVAIVKGYAPESVLERSWG--TEKVDVPKAPGLGLVLERVHFEKYNQRFGNDG 351
+R+ V L+ ++ ++ L R G T DVP L LER+ E +R G+D
Sbjct: 464 LREKVNLLEQELQELRAQAALARDMGPPTFPEDVP---ALQRELERLRAELREERQGHDQ 520
Query: 352 L-----HEPLDWAQEEGKVAAFKEEHIYPTIIGTERDERSMAQWLSTLPIHNFSATALTA 406
+ HE L W +E+ KV ++++ + +R++R + + L L + + L
Sbjct: 521 MSSGFQHERLVWKEEKEKVIQYQKQLQQSYVAMYQRNQR-LEKALQQLARGDSAGEPLEV 579
Query: 407 GGTGAKVP 414
GA +P
Sbjct: 580 DLEGADIP 587
>gi|211971095 zygote arrest 1-like [Homo sapiens]
Length = 321
Score = 31.2 bits (69), Expect = 1.9
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 19 LGPRP--SCSPRMAGNA-EPPPA-GAACPQDRRSCSGRAGGDRVWEDGEHPAKKLKSGGD 74
LGPR SCSP + EP PA G P +GR G R+ DG+ K G
Sbjct: 107 LGPRTLSSCSPWDGRDPQEPLPACGVTSP-----ATGRRGLIRLRRDGDEAESKALPGPA 161
Query: 75 EERREKPPKRK 85
E + +PP R+
Sbjct: 162 EASQPQPPSRR 172
>gi|197313700 torsin family 2, member A isoform c [Homo sapiens]
Length = 242
Score = 31.2 bits (69), Expect = 1.9
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 2 GLQLRALLGAFGRWTLRLGPRPSCSPRMAGNAEPPPAGAACPQDRRSCSGRAG 54
G R + F RW L+LG PR +G A PP A P R +G AG
Sbjct: 186 GTNYRKAIFIFIRWLLKLGHHGRAPPRRSG-ALPPAPAAPRPALRAQRAGPAG 237
>gi|169206224 PREDICTED: hypothetical protein [Homo sapiens]
Length = 318
Score = 30.8 bits (68), Expect = 2.5
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 66 AKKLKSGGDEERREKPPKR------KIVLLMAYSG-----KGYHGMQRNVGSSQFKTIED 114
A+++ + G R + P+R ++ + A++G KG G+QR VG+++F I
Sbjct: 149 ARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRKVGTAEF-GISA 207
Query: 115 DLVSALVRSGCIPENHGEDMRKMSFQR 141
+ + RS ++HG + K +QR
Sbjct: 208 ETGKKINRSTSYMQSHGNCLGKRKWQR 234
>gi|169206527 PREDICTED: hypothetical protein [Homo sapiens]
Length = 318
Score = 30.8 bits (68), Expect = 2.5
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 66 AKKLKSGGDEERREKPPKR------KIVLLMAYSG-----KGYHGMQRNVGSSQFKTIED 114
A+++ + G R + P+R ++ + A++G KG G+QR VG+++F I
Sbjct: 149 ARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRKVGTAEF-GISA 207
Query: 115 DLVSALVRSGCIPENHGEDMRKMSFQR 141
+ + RS ++HG + K +QR
Sbjct: 208 ETGKKINRSTSYMQSHGNCLGKRKWQR 234
>gi|113424187 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 30.8 bits (68), Expect = 2.5
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 66 AKKLKSGGDEERREKPPKR------KIVLLMAYSG-----KGYHGMQRNVGSSQFKTIED 114
A+++ + G R + P+R ++ + A++G KG G+QR VG+++F I
Sbjct: 99 ARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRKVGTAEF-GISA 157
Query: 115 DLVSALVRSGCIPENHGEDMRKMSFQR 141
+ + RS ++HG + K +QR
Sbjct: 158 ETGKKINRSTSYMQSHGNCLGKRKWQR 184
>gi|239508745 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 30.8 bits (68), Expect = 2.5
Identities = 19/56 (33%), Positives = 25/56 (44%)
Query: 10 GAFGRWTLRLGPRPSCSPRMAGNAEPPPAGAACPQDRRSCSGRAGGDRVWEDGEHP 65
G GR GPRP+ S A A A A + R+C+GR+ GD + P
Sbjct: 119 GPRGRLPWVTGPRPAGSLPAAQFAAASGAARAGRRRERACAGRSAGDAAGPEAPQP 174
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 30.4 bits (67), Expect = 3.2
Identities = 17/63 (26%), Positives = 26/63 (41%)
Query: 23 PSCSPRMAGNAEPPPAGAACPQDRRSCSGRAGGDRVWEDGEHPAKKLKSGGDEERREKPP 82
P+ PR G+ +P G + R S GG + G+ +K G E R +K
Sbjct: 415 PAAKPRGGGSKKPRRRGPKAAKSRGGKSRSGGGKKPRRRGQKARQKAAEAGAESRGDKKQ 474
Query: 83 KRK 85
R+
Sbjct: 475 GRQ 477
>gi|4885075 atonal homolog 1 [Homo sapiens]
Length = 354
Score = 30.4 bits (67), Expect = 3.2
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 12/96 (12%)
Query: 30 AGNAEPPPAGAACPQD----RRSCSGRAGGDRVWEDGEHPAKKLKSGGDEERREKPPKRK 85
+G +PPP A+C D R + S G G A SGG + R PP
Sbjct: 219 SGGEQPPPPPASCKSDHHHLRTAASYEGGAGNATAAGAQQA----SGGSQ--RPTPPGSC 272
Query: 86 IVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALV 121
A + G + +Q + + F T ED ++A++
Sbjct: 273 RTRFSAPASAGGYSVQ--LDALHFSTFEDSALTAMM 306
>gi|24234729 semaphorin 6D isoform 1 precursor [Homo sapiens]
Length = 1011
Score = 30.0 bits (66), Expect = 4.2
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 308 YAPESVLERSWGTEKVDVPKAPGLGLV-LER 337
Y+P S L R+ T++VDVP PG+ + LER
Sbjct: 868 YSPPSTLPRNSPTKRVDVPTTPGVPMTSLER 898
>gi|24234741 semaphorin 6D isoform 4 precursor [Homo sapiens]
Length = 1073
Score = 30.0 bits (66), Expect = 4.2
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 308 YAPESVLERSWGTEKVDVPKAPGLGLV-LER 337
Y+P S L R+ T++VDVP PG+ + LER
Sbjct: 930 YSPPSTLPRNSPTKRVDVPTTPGVPMTSLER 960
>gi|24234738 semaphorin 6D isoform 3 precursor [Homo sapiens]
Length = 1017
Score = 30.0 bits (66), Expect = 4.2
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 308 YAPESVLERSWGTEKVDVPKAPGLGLV-LER 337
Y+P S L R+ T++VDVP PG+ + LER
Sbjct: 874 YSPPSTLPRNSPTKRVDVPTTPGVPMTSLER 904
>gi|24234735 semaphorin 6D isoform 2 precursor [Homo sapiens]
Length = 998
Score = 30.0 bits (66), Expect = 4.2
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 308 YAPESVLERSWGTEKVDVPKAPGLGLV-LER 337
Y+P S L R+ T++VDVP PG+ + LER
Sbjct: 855 YSPPSTLPRNSPTKRVDVPTTPGVPMTSLER 885
>gi|50348617 mitochondrial tumor suppressor 1 isoform 2 [Homo
sapiens]
Length = 1216
Score = 30.0 bits (66), Expect = 4.2
Identities = 19/56 (33%), Positives = 23/56 (41%)
Query: 18 RLGPRPSCSPRMAGNAEPPPAGAACPQDRRSCSGRAGGDRVWEDGEHPAKKLKSGG 73
++GP SC R + N P A PQ R S AG V + E P K G
Sbjct: 728 KVGPPVSCLRRNSDNRNPSADRAVSPQRIRRVSSSAGNAAVIKYEEKPPKPAFQNG 783
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 30.0 bits (66), Expect = 4.2
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 20 GPRPSCSPRMAGNAEPPPAGAACPQDRRSCSGRAG-GDRVWEDGEHPAKKLKSGGDEERR 78
GP PS +P G PPP+ + P C G G G + G + L GG
Sbjct: 48 GPYPSAAPPPPGPG-PPPSRQSSPPSASDCFGSNGNGGGAFRPGSR--RLLGLGG----- 99
Query: 79 EKPPKRKIVLLMAYSGKG 96
PP+ +VLL+ + G
Sbjct: 100 --PPRPFVVLLLPLASPG 115
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,401,654
Number of Sequences: 37866
Number of extensions: 888567
Number of successful extensions: 2931
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2896
Number of HSP's gapped (non-prelim): 52
length of query: 427
length of database: 18,247,518
effective HSP length: 105
effective length of query: 322
effective length of database: 14,271,588
effective search space: 4595451336
effective search space used: 4595451336
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.