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Search of human proteins with 6912594
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|6912594 phosphatidylinositol transfer protein, beta [Homo
sapiens]
(271 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|6912594 phosphatidylinositol transfer protein, beta [Homo sap... 568 e-162
gi|5453908 phosphatidylinositol transfer protein, alpha [Homo sa... 465 e-131
gi|195927017 phosphatidylinositol transfer protein, membrane-ass... 224 8e-59
gi|195927015 phosphatidylinositol transfer protein, membrane-ass... 224 8e-59
gi|24308237 phosphatidylinositol transfer protein, membrane-asso... 223 1e-58
gi|32307140 phosphatidylinositol transfer protein, cytoplasmic 1... 184 5e-47
gi|32307142 phosphatidylinositol transfer protein, cytoplasmic 1... 183 2e-46
gi|4507401 transcription factor A, mitochondrial [Homo sapiens] 31 1.0
gi|23397666 transcriptional co-repressor Sin3A [Homo sapiens] 30 1.7
gi|223941785 transcriptional co-repressor Sin3A [Homo sapiens] 30 1.7
gi|223941782 transcriptional co-repressor Sin3A [Homo sapiens] 30 1.7
gi|22035606 mitogen-activated protein kinase kinase kinase kinas... 30 2.2
gi|22035602 mitogen-activated protein kinase kinase kinase kinas... 30 2.2
gi|22035604 mitogen-activated protein kinase kinase kinase kinas... 30 2.2
gi|4502369 gamma-butyrobetaine dioxygenase [Homo sapiens] 29 3.8
gi|239741668 PREDICTED: upstream binding transcription factor, R... 29 5.0
gi|169163306 PREDICTED: upstream binding transcription factor, R... 29 5.0
gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens] 28 6.5
gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens] 28 6.5
gi|239747816 PREDICTED: upstream binding transcription factor, R... 28 8.5
>gi|6912594 phosphatidylinositol transfer protein, beta [Homo
sapiens]
Length = 271
Score = 568 bits (1464), Expect = e-162
Identities = 271/271 (100%), Positives = 271/271 (100%)
Query: 1 MVLIKEFRVVLPCSVQEYQVGQLYSVAEASKNETGGGEGIEVLKNEPYEKDGEKGQYTHK 60
MVLIKEFRVVLPCSVQEYQVGQLYSVAEASKNETGGGEGIEVLKNEPYEKDGEKGQYTHK
Sbjct: 1 MVLIKEFRVVLPCSVQEYQVGQLYSVAEASKNETGGGEGIEVLKNEPYEKDGEKGQYTHK 60
Query: 61 IYHLKSKVPAFVRMIAPEGSLVFHEKAWNAYPYCRTIVTNEYMKDDFFIKIETWHKPDLG 120
IYHLKSKVPAFVRMIAPEGSLVFHEKAWNAYPYCRTIVTNEYMKDDFFIKIETWHKPDLG
Sbjct: 61 IYHLKSKVPAFVRMIAPEGSLVFHEKAWNAYPYCRTIVTNEYMKDDFFIKIETWHKPDLG 120
Query: 121 TLENVHGLDPNTWKTVEIVHIDIADRSQVEPADYKADEDPALFQSVKTKRGPLGPNWKKE 180
TLENVHGLDPNTWKTVEIVHIDIADRSQVEPADYKADEDPALFQSVKTKRGPLGPNWKKE
Sbjct: 121 TLENVHGLDPNTWKTVEIVHIDIADRSQVEPADYKADEDPALFQSVKTKRGPLGPNWKKE 180
Query: 181 LANSPDCPQMCAYKLVTIKFKWWGLQSKVENFIQKQEKRIFTNFHRQLFCWIDKWIDLTM 240
LANSPDCPQMCAYKLVTIKFKWWGLQSKVENFIQKQEKRIFTNFHRQLFCWIDKWIDLTM
Sbjct: 181 LANSPDCPQMCAYKLVTIKFKWWGLQSKVENFIQKQEKRIFTNFHRQLFCWIDKWIDLTM 240
Query: 241 EDIRRMEDETQKELETMRKRGSVRGTSAADV 271
EDIRRMEDETQKELETMRKRGSVRGTSAADV
Sbjct: 241 EDIRRMEDETQKELETMRKRGSVRGTSAADV 271
>gi|5453908 phosphatidylinositol transfer protein, alpha [Homo
sapiens]
Length = 270
Score = 465 bits (1197), Expect = e-131
Identities = 210/270 (77%), Positives = 242/270 (89%)
Query: 1 MVLIKEFRVVLPCSVQEYQVGQLYSVAEASKNETGGGEGIEVLKNEPYEKDGEKGQYTHK 60
MVL+KE+RV+LP SV EYQVGQLYSVAEASKNETGGGEG+EVL NEPYEKDGEKGQYTHK
Sbjct: 1 MVLLKEYRVILPVSVDEYQVGQLYSVAEASKNETGGGEGVEVLVNEPYEKDGEKGQYTHK 60
Query: 61 IYHLKSKVPAFVRMIAPEGSLVFHEKAWNAYPYCRTIVTNEYMKDDFFIKIETWHKPDLG 120
IYHL+SKVP FVRM+APEG+L HEKAWNAYPYCRT++TNEYMK+DF IKIETWHKPDLG
Sbjct: 61 IYHLQSKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVITNEYMKEDFLIKIETWHKPDLG 120
Query: 121 TLENVHGLDPNTWKTVEIVHIDIADRSQVEPADYKADEDPALFQSVKTKRGPLGPNWKKE 180
T ENVH L+P WK VE V+IDIADRSQV DYKA+EDPA F+S+KT RGPLGPNWK+E
Sbjct: 121 TQENVHKLEPEAWKHVEAVYIDIADRSQVLSKDYKAEEDPAKFKSIKTGRGPLGPNWKQE 180
Query: 181 LANSPDCPQMCAYKLVTIKFKWWGLQSKVENFIQKQEKRIFTNFHRQLFCWIDKWIDLTM 240
L N DCP MCAYKLVT+KFKWWGLQ+KVENFI KQE+R+FTNFHRQLFCW+DKW+DLTM
Sbjct: 181 LVNQKDCPYMCAYKLVTVKFKWWGLQNKVENFIHKQERRLFTNFHRQLFCWLDKWVDLTM 240
Query: 241 EDIRRMEDETQKELETMRKRGSVRGTSAAD 270
+DIRRME+ET+++L+ MR++ V+G +A D
Sbjct: 241 DDIRRMEEETKRQLDEMRQKDPVKGMTADD 270
>gi|195927017 phosphatidylinositol transfer protein,
membrane-associated isoform b [Homo sapiens]
Length = 1243
Score = 224 bits (570), Expect = 8e-59
Identities = 114/256 (44%), Positives = 165/256 (64%), Gaps = 7/256 (2%)
Query: 2 VLIKEFRVVLPCSVQEYQVGQLYSVAEASKNETGG-GEGIEVLKNEPY-EKDGEKGQYTH 59
+LIKE+ ++LP S+ EYQV QLY + + S+ E+ G G G+E+L N PY + G GQYTH
Sbjct: 1 MLIKEYHILLPMSLDEYQVAQLYMIQKKSREESSGEGSGVEILANRPYTDGPGGSGQYTH 60
Query: 60 KIYHLKSKVPAFVRMIAPEGSLVFHEKAWNAYPYCRTIVTNEYMKDDFFIKIETWHKPDL 119
K+YH+ S +P + R + P+ +L E++WNAYPY RT T ++ + F I+IET++ PD
Sbjct: 61 KVYHVGSHIPGWFRALLPKAALQVEEESWNAYPYTRTRYTCPFV-EKFSIEIETYYLPDG 119
Query: 120 GTLENVHGLDPNTWKTVEIVHIDIADRSQVEPADYKADEDPALFQSVKTKRGPLGPNWKK 179
G NV L + + IDI R V P +YKA+EDP L+ SVKT RGPL +W +
Sbjct: 120 GQQPNVFNLSGAERRQRILDTIDIV-RDAVAPGEYKAEEDPRLYHSVKTGRGPLSDDWAR 178
Query: 180 ELANSPDCPQMCAYKLVTIKFKWWGLQSKVENFIQKQE-KRIFTNFHRQLFCWIDKWIDL 238
A + P MCAYKL ++F++WG+Q+K+E FI +R+ HRQ +CW D+W +L
Sbjct: 179 TAAQTG--PLMCAYKLCKVEFRYWGMQAKIEQFIHDVGLRRVMLRAHRQAWCWQDEWTEL 236
Query: 239 TMEDIRRMEDETQKEL 254
+M DIR +E+ET + L
Sbjct: 237 SMADIRALEEETARML 252
>gi|195927015 phosphatidylinositol transfer protein,
membrane-associated isoform a [Homo sapiens]
Length = 1244
Score = 224 bits (570), Expect = 8e-59
Identities = 114/256 (44%), Positives = 165/256 (64%), Gaps = 7/256 (2%)
Query: 2 VLIKEFRVVLPCSVQEYQVGQLYSVAEASKNETGG-GEGIEVLKNEPY-EKDGEKGQYTH 59
+LIKE+ ++LP S+ EYQV QLY + + S+ E+ G G G+E+L N PY + G GQYTH
Sbjct: 1 MLIKEYHILLPMSLDEYQVAQLYMIQKKSREESSGEGSGVEILANRPYTDGPGGSGQYTH 60
Query: 60 KIYHLKSKVPAFVRMIAPEGSLVFHEKAWNAYPYCRTIVTNEYMKDDFFIKIETWHKPDL 119
K+YH+ S +P + R + P+ +L E++WNAYPY RT T ++ + F I+IET++ PD
Sbjct: 61 KVYHVGSHIPGWFRALLPKAALQVEEESWNAYPYTRTRYTCPFV-EKFSIEIETYYLPDG 119
Query: 120 GTLENVHGLDPNTWKTVEIVHIDIADRSQVEPADYKADEDPALFQSVKTKRGPLGPNWKK 179
G NV L + + IDI R V P +YKA+EDP L+ SVKT RGPL +W +
Sbjct: 120 GQQPNVFNLSGAERRQRILDTIDIV-RDAVAPGEYKAEEDPRLYHSVKTGRGPLSDDWAR 178
Query: 180 ELANSPDCPQMCAYKLVTIKFKWWGLQSKVENFIQKQE-KRIFTNFHRQLFCWIDKWIDL 238
A + P MCAYKL ++F++WG+Q+K+E FI +R+ HRQ +CW D+W +L
Sbjct: 179 TAAQTG--PLMCAYKLCKVEFRYWGMQAKIEQFIHDVGLRRVMLRAHRQAWCWQDEWTEL 236
Query: 239 TMEDIRRMEDETQKEL 254
+M DIR +E+ET + L
Sbjct: 237 SMADIRALEEETARML 252
>gi|24308237 phosphatidylinositol transfer protein,
membrane-associated 2 [Homo sapiens]
Length = 1349
Score = 223 bits (569), Expect = 1e-58
Identities = 117/273 (42%), Positives = 170/273 (62%), Gaps = 6/273 (2%)
Query: 2 VLIKEFRVVLPCSVQEYQVGQLYSVAEASKNET-GGGEGIEVLKNEPY-EKDGEKGQYTH 59
++IKE+R+ LP +V+EY++ QLY + + S+NET G G G+E+L+N PY + G GQYTH
Sbjct: 1 MIIKEYRIPLPMTVEEYRIAQLYMIQKKSRNETYGEGSGVEILENRPYTDGPGGSGQYTH 60
Query: 60 KIYHLKSKVPAFVRMIAPEGSLVFHEKAWNAYPYCRTIVTNEYMKDDFFIKIETWHKPDL 119
K+YH+ +P++ R I P+ +L E++WNAYPY RT T ++ + F I IET++K D
Sbjct: 61 KVYHVGMHIPSWFRSILPKAALRVVEESWNAYPYTRTRFTCPFV-EKFSIDIETFYKTDA 119
Query: 120 GTLENVHGLDPNTWKTVEIVHIDIADRSQVEPADYKADEDPALFQSVKTKRGPLGPNWKK 179
G +V L P + I IDI + V +YK +EDP LFQS KT+RGPL NW +
Sbjct: 120 GENPDVFNLSPVEKNQLTIDFIDIV-KDPVPHNEYKTEEDPKLFQSTKTQRGPLSENWIE 178
Query: 180 ELANSPDCPQMCAYKLVTIKFKWWGLQSKVENFIQKQE-KRIFTNFHRQLFCWIDKWIDL 238
E P MCAYKL ++F++WG+QSK+E FI +R+ HRQ +CW D+W L
Sbjct: 179 EYKKQV-FPIMCAYKLCKVEFRYWGMQSKIERFIHDTGLRRVMVRAHRQAWCWQDEWYGL 237
Query: 239 TMEDIRRMEDETQKELETMRKRGSVRGTSAADV 271
+ME+IR +E E Q L + + G A ++
Sbjct: 238 SMENIRELEKEAQLMLSRKMAQFNEDGEEATEL 270
>gi|32307140 phosphatidylinositol transfer protein, cytoplasmic 1
isoform a [Homo sapiens]
Length = 332
Score = 184 bits (468), Expect = 5e-47
Identities = 103/256 (40%), Positives = 156/256 (60%), Gaps = 18/256 (7%)
Query: 2 VLIKEFRVVLPCSVQEYQVGQLYSVAEASKNETGGGEGIEVLKNEPYEKDGE-KGQYTHK 60
+L+KE+R+ +P +V EY++GQLY +++ S ++ GEG+EV++NEP+E GQ+T K
Sbjct: 1 MLLKEYRICMPLTVDEYKIGQLYMISKHSHEQSDRGEGVEVVQNEPFEDPHHGNGQFTEK 60
Query: 61 IYHLKSKVPAFVRMIAPEGSLVFH--EKAWNAYPYCRTIVTNEYMKDDFFIKIETWHKPD 118
+L SK+P++ R + P+ +F+ EKAWN YPY T T ++ F I IET ++ +
Sbjct: 61 RVYLNSKLPSWARAVVPK---IFYVTEKAWNYYPYTITEYTCSFLPK-FSIHIETKYEDN 116
Query: 119 LGTLENVHGLDPNTWKTVE--IVHIDIADRSQVEPADYKADEDPALFQSVKTKRGPLGPN 176
G+ + + N K VE + IDIA ++ YK EDP F+S KT RG L
Sbjct: 117 KGSNDTIFD---NEAKDVEREVCFIDIAC-DEIPERYYKESEDPKHFKSEKTGRGQLREG 172
Query: 177 WKKELANSPDCPQMCAYKLVTIKFKWWGLQSKVENFIQKQEKRIFTNFHRQLFCWIDKWI 236
W+ P MC+YKLVT+KF+ WGLQ++VE F+ K + I HRQ F W+D+W
Sbjct: 173 WRDSHQ-----PIMCSYKLVTVKFEVWGLQTRVEQFVHKVVRDILLIGHRQAFAWVDEWY 227
Query: 237 DLTMEDIRRMEDETQK 252
D+TM+++R E TQ+
Sbjct: 228 DMTMDEVREFERATQE 243
>gi|32307142 phosphatidylinositol transfer protein, cytoplasmic 1
isoform b [Homo sapiens]
Length = 268
Score = 183 bits (464), Expect = 2e-46
Identities = 102/257 (39%), Positives = 155/257 (60%), Gaps = 18/257 (7%)
Query: 2 VLIKEFRVVLPCSVQEYQVGQLYSVAEASKNETGGGEGIEVLKNEPYEKDGE-KGQYTHK 60
+L+KE+R+ +P +V EY++GQLY +++ S ++ GEG+EV++NEP+E GQ+T K
Sbjct: 1 MLLKEYRICMPLTVDEYKIGQLYMISKHSHEQSDRGEGVEVVQNEPFEDPHHGNGQFTEK 60
Query: 61 IYHLKSKVPAFVRMIAPEGSLVFH--EKAWNAYPYCRTIVTNEYMKDDFFIKIETWHKPD 118
+L SK+P++ R + P+ +F+ EKAWN YPY T T ++ F I IET ++ +
Sbjct: 61 RVYLNSKLPSWARAVVPK---IFYVTEKAWNYYPYTITEYTCSFLPK-FSIHIETKYEDN 116
Query: 119 LGTLENVHGLDPNTWKTVE--IVHIDIADRSQVEPADYKADEDPALFQSVKTKRGPLGPN 176
G+ + + N K VE + IDIA ++ YK EDP F+S KT RG L
Sbjct: 117 KGSNDTIFD---NEAKDVEREVCFIDIAC-DEIPERYYKESEDPKHFKSEKTGRGQLREG 172
Query: 177 WKKELANSPDCPQMCAYKLVTIKFKWWGLQSKVENFIQKQEKRIFTNFHRQLFCWIDKWI 236
W+ P MC+YKLVT+KF+ WGLQ++VE F+ K + I HRQ F W+D+W
Sbjct: 173 WRDSHQ-----PIMCSYKLVTVKFEVWGLQTRVEQFVHKVVRDILLIGHRQAFAWVDEWY 227
Query: 237 DLTMEDIRRMEDETQKE 253
D+TM+D+R E ++
Sbjct: 228 DMTMDDVREYEKNMHEQ 244
>gi|4507401 transcription factor A, mitochondrial [Homo sapiens]
Length = 246
Score = 31.2 bits (69), Expect = 1.0
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 186 DCPQMCAYKLVTIKFKWWGLQSKVENFIQKQEKRIFTNFHRQLFCWIDKWIDLTMEDIRR 245
D PQ KL T+K W L + + K T +H ++ W ++ I++ +D+ R
Sbjct: 176 DSPQE---KLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLR 232
Query: 246 MEDETQKE 253
+ Q++
Sbjct: 233 RTIKKQRK 240
>gi|23397666 transcriptional co-repressor Sin3A [Homo sapiens]
Length = 1273
Score = 30.4 bits (67), Expect = 1.7
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 18/113 (15%)
Query: 169 KRGPLGPNWKKELANSPDCPQM-CAYKLVTIKFKWWGLQSKVENFIQKQ---------EK 218
K G G N KK + N ++ C +KL + K + K E+++ ++ +
Sbjct: 1145 KEGKEG-NSKKTMENVDSLDKLECRFKLNSYKMVY---VIKSEDYMYRRTALLRAHQSHE 1200
Query: 219 RIFTNFHRQLFCWIDKWIDLTMEDI-RRMEDETQKELETMRKRGSVRGTSAAD 270
R+ H++ W+DKW T E + R M ET K L G V T+ D
Sbjct: 1201 RVSKRLHQRFQAWVDKW---TKEHVPREMAAETSKWLMGEGLEGLVPCTTTCD 1250
>gi|223941785 transcriptional co-repressor Sin3A [Homo sapiens]
Length = 1273
Score = 30.4 bits (67), Expect = 1.7
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 18/113 (15%)
Query: 169 KRGPLGPNWKKELANSPDCPQM-CAYKLVTIKFKWWGLQSKVENFIQKQ---------EK 218
K G G N KK + N ++ C +KL + K + K E+++ ++ +
Sbjct: 1145 KEGKEG-NSKKTMENVDSLDKLECRFKLNSYKMVY---VIKSEDYMYRRTALLRAHQSHE 1200
Query: 219 RIFTNFHRQLFCWIDKWIDLTMEDI-RRMEDETQKELETMRKRGSVRGTSAAD 270
R+ H++ W+DKW T E + R M ET K L G V T+ D
Sbjct: 1201 RVSKRLHQRFQAWVDKW---TKEHVPREMAAETSKWLMGEGLEGLVPCTTTCD 1250
>gi|223941782 transcriptional co-repressor Sin3A [Homo sapiens]
Length = 1273
Score = 30.4 bits (67), Expect = 1.7
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 18/113 (15%)
Query: 169 KRGPLGPNWKKELANSPDCPQM-CAYKLVTIKFKWWGLQSKVENFIQKQ---------EK 218
K G G N KK + N ++ C +KL + K + K E+++ ++ +
Sbjct: 1145 KEGKEG-NSKKTMENVDSLDKLECRFKLNSYKMVY---VIKSEDYMYRRTALLRAHQSHE 1200
Query: 219 RIFTNFHRQLFCWIDKWIDLTMEDI-RRMEDETQKELETMRKRGSVRGTSAAD 270
R+ H++ W+DKW T E + R M ET K L G V T+ D
Sbjct: 1201 RVSKRLHQRFQAWVDKW---TKEHVPREMAAETSKWLMGEGLEGLVPCTTTCD 1250
>gi|22035606 mitogen-activated protein kinase kinase kinase kinase 4
isoform 3 [Homo sapiens]
Length = 1212
Score = 30.0 bits (66), Expect = 2.2
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 210 ENFIQKQEKRIFTNFHRQLFCWIDKWIDLTMEDIRRMEDETQKELETMRKR 260
+ +Q+Q+ R + RQL K I+ E RR+E++ ++E E R++
Sbjct: 373 QQLLQEQQLREQEEYKRQLLAERQKRIEQQKEQRRRLEEQQRREREARRQQ 423
>gi|22035602 mitogen-activated protein kinase kinase kinase kinase 4
isoform 1 [Homo sapiens]
Length = 1166
Score = 30.0 bits (66), Expect = 2.2
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 210 ENFIQKQEKRIFTNFHRQLFCWIDKWIDLTMEDIRRMEDETQKELETMRKR 260
+ +Q+Q+ R + RQL K I+ E RR+E++ ++E E R++
Sbjct: 373 QQLLQEQQLREQEEYKRQLLAERQKRIEQQKEQRRRLEEQQRREREARRQQ 423
>gi|22035604 mitogen-activated protein kinase kinase kinase kinase 4
isoform 2 [Homo sapiens]
Length = 1320
Score = 30.0 bits (66), Expect = 2.2
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 210 ENFIQKQEKRIFTNFHRQLFCWIDKWIDLTMEDIRRMEDETQKELETMRKR 260
+ +Q+Q+ R + RQL K I+ E RR+E++ ++E E R++
Sbjct: 373 QQLLQEQQLREQEEYKRQLLAERQKRIEQQKEQRRRLEEQQRREREARRQQ 423
>gi|4502369 gamma-butyrobetaine dioxygenase [Homo sapiens]
Length = 387
Score = 29.3 bits (64), Expect = 3.8
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 238 LTMEDIRRMEDETQKELETMRKRGSVRGTSAAD 270
L ED+ R ++ K L T++K G VR T A+D
Sbjct: 125 LDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASD 157
>gi|239741668 PREDICTED: upstream binding transcription factor, RNA
polymerase I-like 3 [Homo sapiens]
Length = 457
Score = 28.9 bits (63), Expect = 5.0
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 98 VTNEYMKDDFFIKIETWHKPDLGTLENVHGLDPNTWKTVEIVHIDIADR 146
VT+ D FF K++ +P + H ++W + E+ H+ + +R
Sbjct: 266 VTSLPKTDQFFKKVKFHGEPQKPPMNGYHKFHQDSWSSKELQHLSLRER 314
>gi|169163306 PREDICTED: upstream binding transcription factor, RNA
polymerase I-like 5 [Homo sapiens]
Length = 471
Score = 28.9 bits (63), Expect = 5.0
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 98 VTNEYMKDDFFIKIETWHKPDLGTLENVHGLDPNTWKTVEIVHIDIADR 146
VT+ D FF K++ +P + H ++W + E+ H+ + +R
Sbjct: 280 VTSLPKTDQFFKKVKFHGEPQKPPMNGYHKFHQDSWSSKELQHLSLRER 328
>gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]
Length = 3907
Score = 28.5 bits (62), Expect = 6.5
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 194 KLVTIKFKWWGLQSKVENFIQKQEKRIFTNFHRQL--FCWIDKWIDLTMEDIRRMEDETQ 251
KL+ K + KV + +QKQ K + + Q+ F +++ + + D+R+ +
Sbjct: 2000 KLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALE 2059
Query: 252 KELETMRK 259
K+LE MRK
Sbjct: 2060 KQLEKMRK 2067
>gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens]
Length = 3899
Score = 28.5 bits (62), Expect = 6.5
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 194 KLVTIKFKWWGLQSKVENFIQKQEKRIFTNFHRQL--FCWIDKWIDLTMEDIRRMEDETQ 251
KL+ K + KV + +QKQ K + + Q+ F +++ + + D+R+ +
Sbjct: 2000 KLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALE 2059
Query: 252 KELETMRK 259
K+LE MRK
Sbjct: 2060 KQLEKMRK 2067
>gi|239747816 PREDICTED: upstream binding transcription factor, RNA
polymerase I-like 6 [Homo sapiens]
Length = 400
Score = 28.1 bits (61), Expect = 8.5
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 105 DDFFIKIETWHKPDLGTLENVHGLDPNTWKTVEIVHIDIADR 146
D FF K++ +P + H ++W + E+ H+ + +R
Sbjct: 216 DQFFKKVKFHGEPQKPPMNGYHKFHQDSWSSKELQHLSLRER 257
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,568,235
Number of Sequences: 37866
Number of extensions: 470354
Number of successful extensions: 1236
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1195
Number of HSP's gapped (non-prelim): 24
length of query: 271
length of database: 18,247,518
effective HSP length: 101
effective length of query: 170
effective length of database: 14,423,052
effective search space: 2451918840
effective search space used: 2451918840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.