Search of human proteins with 6912588

Search of human proteins with 6912588

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|6912588 pseudoautosomal GTP-binding protein-like protein
[Homo sapiens]
         (403 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|6912588 pseudoautosomal GTP-binding protein-like protein [Hom...   791   0.0  
gi|239758017 PREDICTED: similar to pseudoautosomal GTP-binding p...   241   8e-64
gi|5803029 ATP/GTP-binding protein isoform 1 [Homo sapiens]            37   0.041
gi|116734710 ATP-binding cassette, sub-family A member 3 [Homo s...    36   0.071
gi|53729339 mitochondrial translational initiation factor 2 prec...    35   0.16 
gi|53729337 mitochondrial translational initiation factor 2 prec...    35   0.16 
gi|75750480 ras homolog gene family, member T1 isoform 1 [Homo s...    33   0.46 
gi|75750476 ras homolog gene family, member T1 isoform 2 [Homo s...    33   0.46 
gi|75750470 ras homolog gene family, member T1 isoform 3 [Homo s...    33   0.46 
gi|169218106 PREDICTED: hypothetical protein, partial [Homo sapi...    32   0.78 
gi|16306595 S-phase kinase-associated protein 2 isoform 1 [Homo ...    32   1.3  
gi|14249170 S-phase kinase-associated protein 2 isoform 2 [Homo ...    32   1.3  
gi|11342664 myxovirus resistance protein 2 [Homo sapiens]              31   2.3  
gi|111955139 GTP-binding protein 10 isoform 2 [Homo sapiens]           30   3.0  
gi|111955063 GTP-binding protein 10 isoform 1 [Homo sapiens]           30   3.0  
gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo sap...    30   3.9  
gi|222136619 myxovirus resistance protein 1 [Homo sapiens]             30   3.9  
gi|222136617 myxovirus resistance protein 1 [Homo sapiens]             30   3.9  
gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C...    30   3.9  
gi|27477115 ATP-binding cassette, sub-family A, member 9 [Homo s...    30   3.9  
gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo sapi...    30   3.9  
gi|146133848 golgi autoantigen, golgin subfamily a, 6 [Homo sapi...    30   3.9  
gi|205277396 dynactin 1 isoform 4 [Homo sapiens]                       30   5.1  
gi|205277392 dynactin 1 isoform 3 [Homo sapiens]                       30   5.1  
gi|6005701 ATP-binding cassette, sub-family A member 8 [Homo sap...    30   5.1  
gi|226529806 histone deacetylase 10 isoform 2 [Homo sapiens]           30   5.1  
gi|20070354 histone deacetylase 10 isoform 1 [Homo sapiens]            30   5.1  
gi|148352331 cell division cycle 10 isoform 1 [Homo sapiens]           30   5.1  
gi|148352329 cell division cycle 10 isoform 2 [Homo sapiens]           30   5.1  
gi|24308117 GTP binding protein 5 [Homo sapiens]                       30   5.1  

>gi|6912588 pseudoautosomal GTP-binding protein-like protein [Homo
           sapiens]
          Length = 403

 Score =  791 bits (2043), Expect = 0.0
 Identities = 403/403 (100%), Positives = 403/403 (100%)

Query: 1   MTRAEWQVAEATALVHTLDGWSVVQTMVVSTKTPDRKLIFGKGNFEHLTEKIRGSPDVTC 60
           MTRAEWQVAEATALVHTLDGWSVVQTMVVSTKTPDRKLIFGKGNFEHLTEKIRGSPDVTC
Sbjct: 1   MTRAEWQVAEATALVHTLDGWSVVQTMVVSTKTPDRKLIFGKGNFEHLTEKIRGSPDVTC 60

Query: 61  VFLNVERMAAPTKKELEAAWGVEVFDRFTVVLHIFRCNARTKEARLQVALAEMPLHRSNL 120
           VFLNVERMAAPTKKELEAAWGVEVFDRFTVVLHIFRCNARTKEARLQVALAEMPLHRSNL
Sbjct: 61  VFLNVERMAAPTKKELEAAWGVEVFDRFTVVLHIFRCNARTKEARLQVALAEMPLHRSNL 120

Query: 121 KRDVAHLYRGVGSRYIMGSGESFMQLQQRLLREKEAKIRKALDRLRKKRHLLRRQRTRRE 180
           KRDVAHLYRGVGSRYIMGSGESFMQLQQRLLREKEAKIRKALDRLRKKRHLLRRQRTRRE
Sbjct: 121 KRDVAHLYRGVGSRYIMGSGESFMQLQQRLLREKEAKIRKALDRLRKKRHLLRRQRTRRE 180

Query: 181 FPVISVVGYTNCGKTTLIKALTGDAAIQPRDQLFATLDVTAHAGTLPSRMTVLYVDTIGF 240
           FPVISVVGYTNCGKTTLIKALTGDAAIQPRDQLFATLDVTAHAGTLPSRMTVLYVDTIGF
Sbjct: 181 FPVISVVGYTNCGKTTLIKALTGDAAIQPRDQLFATLDVTAHAGTLPSRMTVLYVDTIGF 240

Query: 241 LSQLPHGLIESFSATLEDVAHSDLILHVRDVSHPEAELQKCSVLSTLRGLQLPAPLLDSM 300
           LSQLPHGLIESFSATLEDVAHSDLILHVRDVSHPEAELQKCSVLSTLRGLQLPAPLLDSM
Sbjct: 241 LSQLPHGLIESFSATLEDVAHSDLILHVRDVSHPEAELQKCSVLSTLRGLQLPAPLLDSM 300

Query: 301 VEVHNKVDLVPGYSPTEPNVVPVSALRGHGLQELKAELDAAVLKATGRQILTLRVRLAGA 360
           VEVHNKVDLVPGYSPTEPNVVPVSALRGHGLQELKAELDAAVLKATGRQILTLRVRLAGA
Sbjct: 301 VEVHNKVDLVPGYSPTEPNVVPVSALRGHGLQELKAELDAAVLKATGRQILTLRVRLAGA 360

Query: 361 QLSWLYKEATVQEVDVIPEDGAADVRVIISNSAYGKFRKLFPG 403
           QLSWLYKEATVQEVDVIPEDGAADVRVIISNSAYGKFRKLFPG
Sbjct: 361 QLSWLYKEATVQEVDVIPEDGAADVRVIISNSAYGKFRKLFPG 403


>gi|239758017 PREDICTED: similar to pseudoautosomal GTP-binding
           protein-like protein [Homo sapiens]
          Length = 411

 Score =  241 bits (615), Expect = 8e-64
 Identities = 123/123 (100%), Positives = 123/123 (100%)

Query: 140 GESFMQLQQRLLREKEAKIRKALDRLRKKRHLLRRQRTRREFPVISVVGYTNCGKTTLIK 199
           GESFMQLQQRLLREKEAKIRKALDRLRKKRHLLRRQRTRREFPVISVVGYTNCGKTTLIK
Sbjct: 132 GESFMQLQQRLLREKEAKIRKALDRLRKKRHLLRRQRTRREFPVISVVGYTNCGKTTLIK 191

Query: 200 ALTGDAAIQPRDQLFATLDVTAHAGTLPSRMTVLYVDTIGFLSQLPHGLIESFSATLEDV 259
           ALTGDAAIQPRDQLFATLDVTAHAGTLPSRMTVLYVDTIGFLSQLPHGLIESFSATLEDV
Sbjct: 192 ALTGDAAIQPRDQLFATLDVTAHAGTLPSRMTVLYVDTIGFLSQLPHGLIESFSATLEDV 251

Query: 260 AHS 262
           AHS
Sbjct: 252 AHS 254


>gi|5803029 ATP/GTP-binding protein isoform 1 [Homo sapiens]
          Length = 425

 Score = 36.6 bits (83), Expect = 0.041
 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 172 LRRQRTRREF--PVISVVGYTNCGKTTLIKALTGDAAIQPRDQLFATLDVTAHAGTLPSR 229
           +RRQ  + E   P + VVG T+ GK+T+ + L   A    R   +  LDV   + ++P  
Sbjct: 103 MRRQAEKEEERGPRVMVVGPTDVGKSTVCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGT 162

Query: 230 MTVLYVD-----TIGFLSQLPHGLIESFSAT 255
           M  LY++       GF  Q P  L+  F +T
Sbjct: 163 MGALYIERPADVEEGFSIQAP--LVYHFGST 191


>gi|116734710 ATP-binding cassette, sub-family A member 3 [Homo
            sapiens]
          Length = 1704

 Score = 35.8 bits (81), Expect = 0.071
 Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 18/108 (16%)

Query: 186  VVGYTNCGKTTLIKALTGDAAIQPRDQLFATLDVTAHAGTLPSRMTVLYVDTIGFLSQLP 245
            ++G+   GKTT  K LTG+ ++   D       +++  G +  R        IG+  Q  
Sbjct: 1414 LLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKVRQR--------IGYCPQ-- 1463

Query: 246  HGLIESFSATLEDVAHSD-LILHVRDVSHPEAELQKCSVLSTLRGLQL 292
                  F A L+ +   + L+++ R    PE  +  C V +TLRGL L
Sbjct: 1464 ------FDALLDHMTGREMLVMYARLRGIPERHIGAC-VENTLRGLLL 1504


>gi|53729339 mitochondrial translational initiation factor 2
           precursor [Homo sapiens]
          Length = 727

 Score = 34.7 bits (78), Expect = 0.16
 Identities = 28/100 (28%), Positives = 53/100 (53%), Gaps = 20/100 (20%)

Query: 151 LREKEAKIRKALDRLRKKRHLLRRQRTRREF-----PVISVVGYTNCGKTTLIKAL--TG 203
           ++ K +K+++  D++RK +  +RR +          PV++++G+ + GKTTL+     T 
Sbjct: 147 MKLKWSKLKQ--DKVRKNKDAVRRPQADPALLTPRSPVVTIMGHVDHGKTTLLDKFRKTQ 204

Query: 204 DAAIQPRDQLFATLDVTAHAG----TLPSRMTVLYVDTIG 239
            AA++       T  +T H G    +LPS   + ++DT G
Sbjct: 205 VAAVE-------TGGITQHIGAFLVSLPSGEKITFLDTPG 237


>gi|53729337 mitochondrial translational initiation factor 2
           precursor [Homo sapiens]
          Length = 727

 Score = 34.7 bits (78), Expect = 0.16
 Identities = 28/100 (28%), Positives = 53/100 (53%), Gaps = 20/100 (20%)

Query: 151 LREKEAKIRKALDRLRKKRHLLRRQRTRREF-----PVISVVGYTNCGKTTLIKAL--TG 203
           ++ K +K+++  D++RK +  +RR +          PV++++G+ + GKTTL+     T 
Sbjct: 147 MKLKWSKLKQ--DKVRKNKDAVRRPQADPALLTPRSPVVTIMGHVDHGKTTLLDKFRKTQ 204

Query: 204 DAAIQPRDQLFATLDVTAHAG----TLPSRMTVLYVDTIG 239
            AA++       T  +T H G    +LPS   + ++DT G
Sbjct: 205 VAAVE-------TGGITQHIGAFLVSLPSGEKITFLDTPG 237


>gi|75750480 ras homolog gene family, member T1 isoform 1 [Homo
           sapiens]
          Length = 691

 Score = 33.1 bits (74), Expect = 0.46
 Identities = 18/54 (33%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 150 LLREKEAKIRKALDRLRKKRHLLRRQRTRREFPVISVVGYTNCGKTTLIKALTG 203
           +L E+E++   A+   R K+  L++++T+R     +V+G  NCGK+ +++AL G
Sbjct: 388 ILTEQESQA-SAVTVTRDKKIDLQKKQTQRNVFRCNVIGVKNCGKSGVLQALLG 440


>gi|75750476 ras homolog gene family, member T1 isoform 2 [Homo
           sapiens]
          Length = 659

 Score = 33.1 bits (74), Expect = 0.46
 Identities = 18/54 (33%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 150 LLREKEAKIRKALDRLRKKRHLLRRQRTRREFPVISVVGYTNCGKTTLIKALTG 203
           +L E+E++   A+   R K+  L++++T+R     +V+G  NCGK+ +++AL G
Sbjct: 388 ILTEQESQA-SAVTVTRDKKIDLQKKQTQRNVFRCNVIGVKNCGKSGVLQALLG 440


>gi|75750470 ras homolog gene family, member T1 isoform 3 [Homo
           sapiens]
          Length = 618

 Score = 33.1 bits (74), Expect = 0.46
 Identities = 18/54 (33%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 150 LLREKEAKIRKALDRLRKKRHLLRRQRTRREFPVISVVGYTNCGKTTLIKALTG 203
           +L E+E++   A+   R K+  L++++T+R     +V+G  NCGK+ +++AL G
Sbjct: 388 ILTEQESQA-SAVTVTRDKKIDLQKKQTQRNVFRCNVIGVKNCGKSGVLQALLG 440


>gi|169218106 PREDICTED: hypothetical protein, partial [Homo
           sapiens]
          Length = 436

 Score = 32.3 bits (72), Expect = 0.78
 Identities = 14/39 (35%), Positives = 26/39 (66%)

Query: 137 MGSGESFMQLQQRLLREKEAKIRKALDRLRKKRHLLRRQ 175
           MG  E  MQ Q+  +R++E ++RK  +++RK+   +R+Q
Sbjct: 354 MGEQEEQMQKQEEQVRKQEEQMRKQEEQMRKQEEQMRKQ 392


>gi|16306595 S-phase kinase-associated protein 2 isoform 1 [Homo
           sapiens]
          Length = 424

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 13/107 (12%)

Query: 211 DQLFATLDVTAH------AGTLPSRMTVLYVDTIGFLSQLPHGLIESFSATLEDVAHSDL 264
           + L+ TLD+T         G L S+  + +     F+ Q    L E FS     V H DL
Sbjct: 134 ESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQ---PLAEHFSPFR--VQHMDL 188

Query: 265 ILHVRDVSHPEAELQKCSVLS--TLRGLQLPAPLLDSMVEVHNKVDL 309
              V +VS     L +CS L   +L GL+L  P+++++ +  N V L
Sbjct: 189 SNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 235


>gi|14249170 S-phase kinase-associated protein 2 isoform 2 [Homo
           sapiens]
          Length = 410

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 13/107 (12%)

Query: 211 DQLFATLDVTAH------AGTLPSRMTVLYVDTIGFLSQLPHGLIESFSATLEDVAHSDL 264
           + L+ TLD+T         G L S+  + +     F+ Q    L E FS     V H DL
Sbjct: 134 ESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQ---PLAEHFSPFR--VQHMDL 188

Query: 265 ILHVRDVSHPEAELQKCSVLS--TLRGLQLPAPLLDSMVEVHNKVDL 309
              V +VS     L +CS L   +L GL+L  P+++++ +  N V L
Sbjct: 189 SNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 235


>gi|11342664 myxovirus resistance protein 2 [Homo sapiens]
          Length = 715

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 10/137 (7%)

Query: 147 QQRLLREKEAKIRKALDRLRKKRHLLRRQRTRREFPVISVVGYTNCGKTTLIKALTGDA- 205
           +  L  + E K+R  +D +   R L   Q      P I+V+G  + GK+++++AL+G A 
Sbjct: 86  ENNLYSQYEQKVRPCIDLIDSLRALGVEQDLA--LPAIAVIGDQSSGKSSVLEALSGVAL 143

Query: 206 ----AIQPRDQLFATL---DVTAHAGTLPSRMTVLYVDTIGFLSQLPHGLIESFSATLED 258
                I  R  L   L      A AG +  R T L +   G + +  H      +     
Sbjct: 144 PRGSGIVTRCPLVLKLKKQPCEAWAGRISYRNTELELQDPGQVEKEIHKAQNVMAGNGRG 203

Query: 259 VAHSDLILHVRDVSHPE 275
           ++H  + L +     P+
Sbjct: 204 ISHELISLEITSPEVPD 220


>gi|111955139 GTP-binding protein 10 isoform 2 [Homo sapiens]
          Length = 387

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 20/119 (16%)

Query: 228 SRMTVLYVDTIGFLSQLPHGLIESFSATLEDVAHSDLILHVRDVSHPEAELQKCSVLSTL 287
           +R  +  VD  GF         +  S T    A   +IL  +++   + ELQ    L  +
Sbjct: 227 TRQLLFVVDISGF---------QLSSHTQYRTAFETIILLTKELELYKEELQTKPALLAV 277

Query: 288 RGLQLPAP---LLDSMVEVHNKVD--------LVPGYSPTEPNVVPVSALRGHGLQELK 335
             + LP       + M ++ N  D        ++P  +    +++P+SA+ G G++ELK
Sbjct: 278 NKMDLPDAQDKFHELMSQLQNPKDFLHLFEKNMIPERTVEFQHIIPISAVTGEGIEELK 336


>gi|111955063 GTP-binding protein 10 isoform 1 [Homo sapiens]
          Length = 308

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 20/119 (16%)

Query: 228 SRMTVLYVDTIGFLSQLPHGLIESFSATLEDVAHSDLILHVRDVSHPEAELQKCSVLSTL 287
           +R  +  VD  GF         +  S T    A   +IL  +++   + ELQ    L  +
Sbjct: 148 TRQLLFVVDISGF---------QLSSHTQYRTAFETIILLTKELELYKEELQTKPALLAV 198

Query: 288 RGLQLPAP---LLDSMVEVHNKVD--------LVPGYSPTEPNVVPVSALRGHGLQELK 335
             + LP       + M ++ N  D        ++P  +    +++P+SA+ G G++ELK
Sbjct: 199 NKMDLPDAQDKFHELMSQLQNPKDFLHLFEKNMIPERTVEFQHIIPISAVTGEGIEELK 257


>gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo
           sapiens]
          Length = 693

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 14/35 (40%), Positives = 23/35 (65%)

Query: 144 MQLQQRLLREKEAKIRKALDRLRKKRHLLRRQRTR 178
           +Q Q   LR++E ++RK  +RLRK+   L++Q  R
Sbjct: 374 LQEQGERLRKQEQRLRKQEERLRKEEERLQKQEKR 408



 Score = 29.3 bits (64), Expect = 6.6
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query: 147 QQRLLREKEAKIRKALDRLRKKRHLLRRQRTR 178
           QQ+ L+E+  ++RK   RLRK+   LR++  R
Sbjct: 370 QQKTLQEQGERLRKQEQRLRKQEERLRKEEER 401


>gi|222136619 myxovirus resistance protein 1 [Homo sapiens]
          Length = 662

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 147 QQRLLREKEAKIRKALDRLRKKRHLLRRQRTRREFPVISVVGYTNCGKTTLIKALTGDA 205
           +  L  + E K+R  +D +   R L   Q      P I+V+G  + GK+++++AL+G A
Sbjct: 38  ENNLCSQYEEKVRPCIDLIDSLRALGVEQDLA--LPAIAVIGDQSSGKSSVLEALSGVA 94


>gi|222136617 myxovirus resistance protein 1 [Homo sapiens]
          Length = 662

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 147 QQRLLREKEAKIRKALDRLRKKRHLLRRQRTRREFPVISVVGYTNCGKTTLIKALTGDA 205
           +  L  + E K+R  +D +   R L   Q      P I+V+G  + GK+++++AL+G A
Sbjct: 38  ENNLCSQYEEKVRPCIDLIDSLRALGVEQDLA--LPAIAVIGDQSSGKSSVLEALSGVA 94


>gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C
           isoform 1 [Homo sapiens]
          Length = 693

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 14/35 (40%), Positives = 23/35 (65%)

Query: 144 MQLQQRLLREKEAKIRKALDRLRKKRHLLRRQRTR 178
           +Q Q   LR++E ++RK  +RLRK+   L++Q  R
Sbjct: 374 LQEQGERLRKQEQRLRKQEERLRKEEERLQKQEKR 408



 Score = 29.3 bits (64), Expect = 6.6
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query: 147 QQRLLREKEAKIRKALDRLRKKRHLLRRQRTR 178
           QQ+ L+E+  ++RK   RLRK+   LR++  R
Sbjct: 370 QQKTLQEQGERLRKQEQRLRKQEERLRKEEER 401


>gi|27477115 ATP-binding cassette, sub-family A, member 9 [Homo
            sapiens]
          Length = 1624

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 17/132 (12%)

Query: 88   FTVVLHIFRC---NARTKEARLQVALAEMPLHRSNL-----------KRDVA-HLYRGVG 132
            F + L I RC   N R K  R        P  RSN            + D+     R V 
Sbjct: 1213 FLIFLFILRCLEMNCRKKLMRKDPVFRISP--RSNAIFPNPEEPEGEEEDIQMERMRTVN 1270

Query: 133  SRYIMGSGESFMQLQQRLLREKEAKIRKALDRLRKKRHLLRRQRTRREFPVISVVGYTNC 192
            +  +    E+ + +   L +E   K +    + +KK          ++  VI ++G+   
Sbjct: 1271 AMAVRDFDETPVIIASCLRKEYAGKKKNCFSKRKKKIATRNVSFCVKKGEVIGLLGHNGA 1330

Query: 193  GKTTLIKALTGD 204
            GK+T IK +TGD
Sbjct: 1331 GKSTTIKMITGD 1342


>gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo
           sapiens]
          Length = 693

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 14/35 (40%), Positives = 23/35 (65%)

Query: 144 MQLQQRLLREKEAKIRKALDRLRKKRHLLRRQRTR 178
           +Q Q   LR++E ++RK  +RLRK+   L++Q  R
Sbjct: 374 LQEQGERLRKQEQRLRKQEERLRKEEERLQKQEKR 408



 Score = 29.3 bits (64), Expect = 6.6
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query: 147 QQRLLREKEAKIRKALDRLRKKRHLLRRQRTR 178
           QQ+ L+E+  ++RK   RLRK+   LR++  R
Sbjct: 370 QQKTLQEQGERLRKQEQRLRKQEERLRKEEER 401


>gi|146133848 golgi autoantigen, golgin subfamily a, 6 [Homo
           sapiens]
          Length = 693

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 14/35 (40%), Positives = 23/35 (65%)

Query: 144 MQLQQRLLREKEAKIRKALDRLRKKRHLLRRQRTR 178
           +Q Q   LR++E ++RK  +RLRK+   L++Q  R
Sbjct: 374 LQEQGERLRKQEQRLRKQEERLRKEEERLQKQEKR 408



 Score = 29.3 bits (64), Expect = 6.6
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query: 147 QQRLLREKEAKIRKALDRLRKKRHLLRRQRTR 178
           QQ+ L+E+  ++RK   RLRK+   LR++  R
Sbjct: 370 QQKTLQEQGERLRKQEQRLRKQEERLRKEEER 401


>gi|205277396 dynactin 1 isoform 4 [Homo sapiens]
          Length = 1139

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 25/155 (16%)

Query: 65  VERMAAPTKKELEAA--WGVEVFDRFTVVLHIFRC----NARTKEARLQVALAEMPLHRS 118
           VE  AA  + E+  A   G+++ DR TV+  + +          EA ++++L E  L   
Sbjct: 790 VELRAAALRAEITDAEGLGLKLEDRETVIKELKKSLKIKGEELSEANVRLSLLEKKL--D 847

Query: 119 NLKRDVAHLYRGVGSRYIMGSGESFMQLQQRLLREKEAKIRKALDRLR--------KKRH 170
           +  +D       V +R         ++  Q LLR+KE +  + +D L+        +K  
Sbjct: 848 SAAKDADERIEKVQTR---------LEETQALLRKKEKEFEETMDALQADIDQLEAEKAE 898

Query: 171 LLRRQRTRREFPVISVVGYTNCGKTTLIKALTGDA 205
           L +R  ++ +  +  + G    G  TL+  + G A
Sbjct: 899 LKQRLNSQSKRTIEGLRGPPPSGIATLVSGIAGGA 933


>gi|205277392 dynactin 1 isoform 3 [Homo sapiens]
          Length = 1253

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 25/155 (16%)

Query: 65   VERMAAPTKKELEAA--WGVEVFDRFTVVLHIFRC----NARTKEARLQVALAEMPLHRS 118
            VE  AA  + E+  A   G+++ DR TV+  + +          EA ++++L E  L   
Sbjct: 904  VELRAAALRAEITDAEGLGLKLEDRETVIKELKKSLKIKGEELSEANVRLSLLEKKL--D 961

Query: 119  NLKRDVAHLYRGVGSRYIMGSGESFMQLQQRLLREKEAKIRKALDRLR--------KKRH 170
            +  +D       V +R         ++  Q LLR+KE +  + +D L+        +K  
Sbjct: 962  SAAKDADERIEKVQTR---------LEETQALLRKKEKEFEETMDALQADIDQLEAEKAE 1012

Query: 171  LLRRQRTRREFPVISVVGYTNCGKTTLIKALTGDA 205
            L +R  ++ +  +  + G    G  TL+  + G A
Sbjct: 1013 LKQRLNSQSKRTIEGLRGPPPSGIATLVSGIAGGA 1047


>gi|6005701 ATP-binding cassette, sub-family A member 8 [Homo sapiens]
          Length = 1581

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 151  LREKEAKIRKALDRLRKKRHLLRRQR-TRREFPVISVVGYTNCGKTTLIKALTGD 204
            LR++ A  RK     RK +   R      R+  V+ ++G+   GK+T IK +TGD
Sbjct: 1245 LRKEYAGKRKGCFSKRKNKIATRNVSFCVRKGEVLGLLGHNGAGKSTSIKVITGD 1299


>gi|226529806 histone deacetylase 10 isoform 2 [Homo sapiens]
          Length = 649

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 45/159 (28%), Positives = 63/159 (39%), Gaps = 21/159 (13%)

Query: 206 AIQPRDQLFATLDVTAHAGTLPSRMTVLYVDTIGFLSQLPHGLIESFSATLEDVAHSDLI 265
           A  P     ATLDV    G       +L V  +G L + P    +  S  L         
Sbjct: 460 AATPASAAAATLDVAVRRGLSHGAQRLLCV-ALGQLDRPPDLAHDGRSLWLNIRGKEAAA 518

Query: 266 LHVRDVSHPEAELQKCSVLSTLRGLQLPAPLLDSMVEVHNKVDLVPGYSPTEPNVVPVSA 325
           L +  VS P   +     LS + GL LP               L  G+   +P++V V+ 
Sbjct: 519 LSMFHVSTP-LPVMTGGFLSCILGLVLP---------------LAYGF---QPDLVLVAL 559

Query: 326 LRGHGLQELKAELDAAVLKA-TGRQILTLRVRLAGAQLS 363
             GHGLQ   A L AA+L+   G ++L L    +  QL+
Sbjct: 560 GPGHGLQGPHAALLAAMLRGLAGGRVLALLEENSTPQLA 598


>gi|20070354 histone deacetylase 10 isoform 1 [Homo sapiens]
          Length = 669

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 45/159 (28%), Positives = 63/159 (39%), Gaps = 21/159 (13%)

Query: 206 AIQPRDQLFATLDVTAHAGTLPSRMTVLYVDTIGFLSQLPHGLIESFSATLEDVAHSDLI 265
           A  P     ATLDV    G       +L V  +G L + P    +  S  L         
Sbjct: 480 AATPASAAAATLDVAVRRGLSHGAQRLLCV-ALGQLDRPPDLAHDGRSLWLNIRGKEAAA 538

Query: 266 LHVRDVSHPEAELQKCSVLSTLRGLQLPAPLLDSMVEVHNKVDLVPGYSPTEPNVVPVSA 325
           L +  VS P   +     LS + GL LP               L  G+   +P++V V+ 
Sbjct: 539 LSMFHVSTP-LPVMTGGFLSCILGLVLP---------------LAYGF---QPDLVLVAL 579

Query: 326 LRGHGLQELKAELDAAVLKA-TGRQILTLRVRLAGAQLS 363
             GHGLQ   A L AA+L+   G ++L L    +  QL+
Sbjct: 580 GPGHGLQGPHAALLAAMLRGLAGGRVLALLEENSTPQLA 618


>gi|148352331 cell division cycle 10 isoform 1 [Homo sapiens]
          Length = 437

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 34/152 (22%), Positives = 66/152 (43%), Gaps = 16/152 (10%)

Query: 174 RQRTRREFP-VISVVGYTNCGKTTLIKALTGDAAIQPR-----DQLFATLDVTAHAGTLP 227
           R+  +R F   + VVG +  GK+TLI +L       P       ++  T+ V      + 
Sbjct: 42  RKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIK 101

Query: 228 S---RMTVLYVDTIGFLSQLPHG-----LIESFSATLEDVAHSDLILHVRDVSHPEAELQ 279
               ++ +  VDT GF   + +      +I+   +  ED  +++  ++ R +  P+  +Q
Sbjct: 102 EGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQM--PDNRVQ 159

Query: 280 KCSVLSTLRGLQLPAPLLDSMVEVHNKVDLVP 311
            C       G  L    ++ M  +H KV+++P
Sbjct: 160 CCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIP 191


>gi|148352329 cell division cycle 10 isoform 2 [Homo sapiens]
          Length = 436

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 34/152 (22%), Positives = 66/152 (43%), Gaps = 16/152 (10%)

Query: 174 RQRTRREFP-VISVVGYTNCGKTTLIKALTGDAAIQPR-----DQLFATLDVTAHAGTLP 227
           R+  +R F   + VVG +  GK+TLI +L       P       ++  T+ V      + 
Sbjct: 41  RKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIK 100

Query: 228 S---RMTVLYVDTIGFLSQLPHG-----LIESFSATLEDVAHSDLILHVRDVSHPEAELQ 279
               ++ +  VDT GF   + +      +I+   +  ED  +++  ++ R +  P+  +Q
Sbjct: 101 EGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQM--PDNRVQ 158

Query: 280 KCSVLSTLRGLQLPAPLLDSMVEVHNKVDLVP 311
            C       G  L    ++ M  +H KV+++P
Sbjct: 159 CCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIP 190


>gi|24308117 GTP binding protein 5 [Homo sapiens]
          Length = 406

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 37/162 (22%), Positives = 65/162 (40%), Gaps = 14/162 (8%)

Query: 186 VVGYTNCGKTTLIKALTGDAAIQPRDQLFATLDVTAHAGTL--PSRMTVLYVDTIGFLSQ 243
           +VG+ N GK++L++A++     +P    +    +  H G +     + +   D  G + +
Sbjct: 229 MVGFPNAGKSSLLRAISN---ARPAVASYPFTTLKPHVGIVHYEGHLQIAVADIPGII-R 284

Query: 244 LPHGLIESFSATLEDVAHSDLILHVRDVSHPEAELQKCSVLSTLRGLQLPAPLLDSMVEV 303
             H      SA L  +     +L V D+S PE   Q   +   L   +         + V
Sbjct: 285 GAHQNRGLGSAFLRHIERCRFLLFVVDLSQPEPWTQVDDLKYELEMYEKGLSARPHAI-V 343

Query: 304 HNKVDLVPGYSPTE-------PNVVPVSALRGHGLQELKAEL 338
            NK+DL    +            V+ +SAL G  L++L   L
Sbjct: 344 ANKIDLPEAQANLSQLRDHLGQEVIVLSALTGENLEQLLLHL 385


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.135    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,090,486
Number of Sequences: 37866
Number of extensions: 587961
Number of successful extensions: 2207
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2132
Number of HSP's gapped (non-prelim): 98
length of query: 403
length of database: 18,247,518
effective HSP length: 105
effective length of query: 298
effective length of database: 14,271,588
effective search space: 4252933224
effective search space used: 4252933224
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.