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Search of human proteins with 65301135
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|65301135 polymerase (RNA) III (DNA directed) polypeptide H
(22.9kD) isoform b [Homo sapiens]
(175 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|65301135 polymerase (RNA) III (DNA directed) polypeptide H (2... 360 e-100
gi|65301161 polymerase (RNA) III (DNA directed) polypeptide H (2... 345 1e-95
gi|24475814 polymerase (RNA) III (DNA directed) polypeptide H (2... 345 1e-95
gi|169167062 PREDICTED: hypothetical protein LOC285556 [Homo sap... 31 0.63
gi|113416182 PREDICTED: hypothetical protein LOC285556 [Homo sap... 31 0.63
gi|113415686 PREDICTED: hypothetical protein LOC285556 [Homo sap... 31 0.63
gi|4507545 G protein-coupled receptor 137B [Homo sapiens] 31 0.63
gi|46488932 interferon-alpha receptor 1 precursor [Homo sapiens] 28 4.1
gi|224589071 BMS1-like, ribosome assembly protein [Homo sapiens] 28 5.3
gi|210031233 PR domain containing 6 [Homo sapiens] 28 5.3
gi|110349719 titin isoform N2-A [Homo sapiens] 27 9.0
gi|197276602 microtubule-associated protein 4 isoform 5 [Homo sa... 27 9.0
gi|197276600 microtubule-associated protein 4 isoform 4 [Homo sa... 27 9.0
gi|47519675 microtubule-associated protein 4 isoform 2 [Homo sap... 27 9.0
gi|47519639 microtubule-associated protein 4 isoform 1 [Homo sap... 27 9.0
>gi|65301135 polymerase (RNA) III (DNA directed) polypeptide H
(22.9kD) isoform b [Homo sapiens]
Length = 175
Score = 360 bits (925), Expect = e-100
Identities = 175/175 (100%), Positives = 175/175 (100%)
Query: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGDGASHTKVSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIR 120
PGDGASHTKVSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIR
Sbjct: 61 PGDGASHTKVSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIR 120
Query: 121 FRVVDESFVDTSPTGPSSADATTSSEELPKKEAPYTLVGSISEPGLGLLSWWTSN 175
FRVVDESFVDTSPTGPSSADATTSSEELPKKEAPYTLVGSISEPGLGLLSWWTSN
Sbjct: 121 FRVVDESFVDTSPTGPSSADATTSSEELPKKEAPYTLVGSISEPGLGLLSWWTSN 175
>gi|65301161 polymerase (RNA) III (DNA directed) polypeptide H
(22.9kD) isoform a [Homo sapiens]
Length = 204
Score = 345 bits (885), Expect = 1e-95
Identities = 175/204 (85%), Positives = 175/204 (85%), Gaps = 29/204 (14%)
Query: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGDGASHTK-----------------------------VSLGFFDDILIPPESLQQPAKF 91
PGDGASHTK VSLGFFDDILIPPESLQQPAKF
Sbjct: 61 PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF 120
Query: 92 DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSEELPKK 151
DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSEELPKK
Sbjct: 121 DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSEELPKK 180
Query: 152 EAPYTLVGSISEPGLGLLSWWTSN 175
EAPYTLVGSISEPGLGLLSWWTSN
Sbjct: 181 EAPYTLVGSISEPGLGLLSWWTSN 204
>gi|24475814 polymerase (RNA) III (DNA directed) polypeptide H
(22.9kD) isoform a [Homo sapiens]
Length = 204
Score = 345 bits (885), Expect = 1e-95
Identities = 175/204 (85%), Positives = 175/204 (85%), Gaps = 29/204 (14%)
Query: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGDGASHTK-----------------------------VSLGFFDDILIPPESLQQPAKF 91
PGDGASHTK VSLGFFDDILIPPESLQQPAKF
Sbjct: 61 PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF 120
Query: 92 DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSEELPKK 151
DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSEELPKK
Sbjct: 121 DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSEELPKK 180
Query: 152 EAPYTLVGSISEPGLGLLSWWTSN 175
EAPYTLVGSISEPGLGLLSWWTSN
Sbjct: 181 EAPYTLVGSISEPGLGLLSWWTSN 204
>gi|169167062 PREDICTED: hypothetical protein LOC285556 [Homo
sapiens]
Length = 1826
Score = 30.8 bits (68), Expect = 0.63
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 77 DILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDE----SFVDTS 132
DI+ + + P K +EA + E + E D+ D G R+ D SFVD +
Sbjct: 381 DIIAKSQGSRDPPKVEEAHYITTHEIQLSEVEQDMDFDVGLASRWDFEDNNVIYSFVDYA 440
Query: 133 PTGPSS---ADATTSSEE 147
G S D T+ +EE
Sbjct: 441 SFGGSDETPGDITSLTEE 458
>gi|113416182 PREDICTED: hypothetical protein LOC285556 [Homo
sapiens]
Length = 1826
Score = 30.8 bits (68), Expect = 0.63
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 77 DILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDE----SFVDTS 132
DI+ + + P K +EA + E + E D+ D G R+ D SFVD +
Sbjct: 381 DIIAKSQGSRDPPKVEEAHYITTHEIQLSEVEQDMDFDVGLASRWDFEDNNVIYSFVDYA 440
Query: 133 PTGPSS---ADATTSSEE 147
G S D T+ +EE
Sbjct: 441 SFGGSDETPGDITSLTEE 458
>gi|113415686 PREDICTED: hypothetical protein LOC285556 [Homo
sapiens]
Length = 1826
Score = 30.8 bits (68), Expect = 0.63
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 77 DILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDE----SFVDTS 132
DI+ + + P K +EA + E + E D+ D G R+ D SFVD +
Sbjct: 381 DIIAKSQGSRDPPKVEEAHYITTHEIQLSEVEQDMDFDVGLASRWDFEDNNVIYSFVDYA 440
Query: 133 PTGPSS---ADATTSSEE 147
G S D T+ +EE
Sbjct: 441 SFGGSDETPGDITSLTEE 458
>gi|4507545 G protein-coupled receptor 137B [Homo sapiens]
Length = 399
Score = 30.8 bits (68), Expect = 0.63
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
+F+LV + V + +ERK+ S+ +N L V+ V L ICL+ I+K+ A ++
Sbjct: 168 VFLLVNLTCAVLVKTGNWERKVIVSVRVAINDTLF--VLCAVSLSICLYKISKMSLANIY 225
>gi|46488932 interferon-alpha receptor 1 precursor [Homo sapiens]
Length = 557
Score = 28.1 bits (61), Expect = 4.1
Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 24/134 (17%)
Query: 23 NDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVSLGFFDDILIPP 82
+D++ E+ +K+ VG+CI LF + + A KV L + + P
Sbjct: 422 SDAVCEKTKPGNTSKIWLIVGICIALFALPFVIYA----------AKVFLRCINYVFFP- 470
Query: 83 ESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADAT 142
SL+ + D EY +E+ +L + T EE +++ F+ + + ++ + T
Sbjct: 471 -SLKPSSSID--------EYFSEQPLKNLLLSTSEE----QIEKCFIIENISTIATVEET 517
Query: 143 TSSEELPKKEAPYT 156
++E KK + T
Sbjct: 518 NQTDEDHKKYSSQT 531
>gi|224589071 BMS1-like, ribosome assembly protein [Homo sapiens]
Length = 1282
Score = 27.7 bits (60), Expect = 5.3
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 94 AEQVWVWEYETEEG----AHDLYMDTGEEIRFRVVDESFVDTSPT-GPSS-ADATTSSEE 147
AE+V+ E E+EE A + + E IR ++ S V + GP + D T+ E
Sbjct: 584 AEEVFASEDESEESSSLSAEEEDSENEEAIRKKLSKPSQVSSGQKLGPQNFIDETSDIEN 643
Query: 148 LPKKEAPYTLVGSISEPGLGLLSW 171
L K+E Y + S+ G L W
Sbjct: 644 LLKEEEDYKEENNDSKETSGALKW 667
>gi|210031233 PR domain containing 6 [Homo sapiens]
Length = 595
Score = 27.7 bits (60), Expect = 5.3
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 72 LGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGE 117
+G F +L+PPE +Q A + +WE ++G ++D GE
Sbjct: 274 IGPFQGVLLPPEKVQAGAVRNTQH---LWEIYDQDGTLQHFIDGGE 316
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 26.9 bits (58), Expect = 9.0
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 83 ESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADAT 142
E + ++D+ E+ EYE E + + + I + V E V T P P A
Sbjct: 9757 EEYEPTEEYDQYEEYEEREYERYEEHEEYITEPEKPIPVKPVPEEPVPTKPKAP---PAK 9813
Query: 143 TSSEELPKKEAPYTLVGSISEP 164
+ +P+++ P + + P
Sbjct: 9814 VLKKAVPEEKVPVPIPKKLKPP 9835
>gi|197276602 microtubule-associated protein 4 isoform 5 [Homo
sapiens]
Length = 817
Score = 26.9 bits (58), Expect = 9.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 131 TSPTGPSSADATTSSEELPKKEAPYTLVGSISEP 164
T P S++ A T LPK+ AP T+ G +P
Sbjct: 442 TQPAKTSTSKAKTQPTSLPKQPAPTTIGGLNKKP 475
>gi|197276600 microtubule-associated protein 4 isoform 4 [Homo
sapiens]
Length = 1135
Score = 26.9 bits (58), Expect = 9.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 131 TSPTGPSSADATTSSEELPKKEAPYTLVGSISEP 164
T P S++ A T LPK+ AP T+ G +P
Sbjct: 707 TQPAKTSTSKAKTQPTSLPKQPAPTTIGGLNKKP 740
>gi|47519675 microtubule-associated protein 4 isoform 2 [Homo
sapiens]
Length = 887
Score = 26.9 bits (58), Expect = 9.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 131 TSPTGPSSADATTSSEELPKKEAPYTLVGSISEP 164
T P S++ A T LPK+ AP T+ G +P
Sbjct: 442 TQPAKTSTSKAKTQPTSLPKQPAPTTIGGLNKKP 475
>gi|47519639 microtubule-associated protein 4 isoform 1 [Homo
sapiens]
Length = 1152
Score = 26.9 bits (58), Expect = 9.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 131 TSPTGPSSADATTSSEELPKKEAPYTLVGSISEP 164
T P S++ A T LPK+ AP T+ G +P
Sbjct: 707 TQPAKTSTSKAKTQPTSLPKQPAPTTIGGLNKKP 740
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.134 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,245,753
Number of Sequences: 37866
Number of extensions: 319384
Number of successful extensions: 718
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 704
Number of HSP's gapped (non-prelim): 22
length of query: 175
length of database: 18,247,518
effective HSP length: 95
effective length of query: 80
effective length of database: 14,650,248
effective search space: 1172019840
effective search space used: 1172019840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.