Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 63999117
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|63999117 hypothetical protein LOC126123 [Homo sapiens]
(221 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|63999117 hypothetical protein LOC126123 [Homo sapiens] 441 e-124
gi|194097475 izumo sperm-egg fusion 1 [Homo sapiens] 39 0.004
gi|16933557 dachsous 1 precursor [Homo sapiens] 32 0.56
gi|7657196 zinc finger protein 330 [Homo sapiens] 31 0.96
gi|27597090 suppressor of Ty 6 homolog [Homo sapiens] 31 0.96
gi|189571693 potassium channel tetramerisation domain containing... 30 1.6
gi|189571691 potassium channel tetramerisation domain containing... 30 1.6
gi|62243484 sarcoma antigen NY-SAR-41 [Homo sapiens] 29 2.8
gi|58761492 Rho guanine nucleotide exchange factor (GEF) 10-like... 28 4.7
gi|74136547 Rho guanine nucleotide exchange factor (GEF) 10-like... 28 4.7
gi|24307963 zinc finger, DHHC-type containing 1 [Homo sapiens] 28 4.7
gi|51896031 hypothetical protein LOC285636 [Homo sapiens] 28 4.7
gi|4506575 retinal outer segment membrane protein 1 [Homo sapiens] 28 6.2
gi|239754542 PREDICTED: hypothetical protein [Homo sapiens] 28 8.1
gi|239749107 PREDICTED: hypothetical protein XP_002346912 [Homo ... 28 8.1
gi|239743136 PREDICTED: hypothetical protein XP_002342759 [Homo ... 28 8.1
gi|239508794 PREDICTED: hypothetical protein [Homo sapiens] 28 8.1
gi|21389623 prominin 2 [Homo sapiens] 28 8.1
gi|157885806 chromosome 12 open reading frame 51 [Homo sapiens] 28 8.1
>gi|63999117 hypothetical protein LOC126123 [Homo sapiens]
Length = 221
Score = 441 bits (1134), Expect = e-124
Identities = 221/221 (100%), Positives = 221/221 (100%)
Query: 1 MPLALTLLLLSGLGAPGGWGCLQCDPLVLEALGHLRSALIPSRFQLEQLQARAGAVLMGM 60
MPLALTLLLLSGLGAPGGWGCLQCDPLVLEALGHLRSALIPSRFQLEQLQARAGAVLMGM
Sbjct: 1 MPLALTLLLLSGLGAPGGWGCLQCDPLVLEALGHLRSALIPSRFQLEQLQARAGAVLMGM 60
Query: 61 EGPFFRDYALNVFVGKVETNQLDLVASFVKNQTQHLMGNSLKDEPLLEELVTLRANVIKE 120
EGPFFRDYALNVFVGKVETNQLDLVASFVKNQTQHLMGNSLKDEPLLEELVTLRANVIKE
Sbjct: 61 EGPFFRDYALNVFVGKVETNQLDLVASFVKNQTQHLMGNSLKDEPLLEELVTLRANVIKE 120
Query: 121 FKKVLISYELKACNPKLCRLLKEEVLDCLHCQRITPKCIHKKYCFVDRQPRVALQYQMDS 180
FKKVLISYELKACNPKLCRLLKEEVLDCLHCQRITPKCIHKKYCFVDRQPRVALQYQMDS
Sbjct: 121 FKKVLISYELKACNPKLCRLLKEEVLDCLHCQRITPKCIHKKYCFVDRQPRVALQYQMDS 180
Query: 181 KYPRNQALLGILISVSLAVFVFVVIVVSACTYRQNRKLLLQ 221
KYPRNQALLGILISVSLAVFVFVVIVVSACTYRQNRKLLLQ
Sbjct: 181 KYPRNQALLGILISVSLAVFVFVVIVVSACTYRQNRKLLLQ 221
>gi|194097475 izumo sperm-egg fusion 1 [Homo sapiens]
Length = 350
Score = 38.9 bits (89), Expect = 0.004
Identities = 32/155 (20%), Positives = 69/155 (44%), Gaps = 5/155 (3%)
Query: 20 GCLQCDPLVLEALGHLRSALIPSRFQLEQLQARAGAVLMGMEGPFFRDYALN--VFVGKV 77
GC+ CDP V+ AL L +P + +A V ++ F++ +LN ++G V
Sbjct: 21 GCVICDPSVVLALKSLEKDYLPGHLDAKHHKAMMERVENAVKD--FQELSLNEDAYMGVV 78
Query: 78 ETNQLDLVASFVKNQTQHLMGNSLKDEPLLEELVTLRANVIKEFKKVLISYELKACNPKL 137
+ L + + + + + +K + ++EL + + F + ++ +A P
Sbjct: 79 DEATLQKGSWSLLKDLKRITDSDVKGDLFVKELFWMLHLQKETFATYVARFQKEAYCPNK 138
Query: 138 CRLLKEEVLDCLHCQRITPKCIHKKYCFVDRQPRV 172
C ++ + ++ C +C++ C K Y +R V
Sbjct: 139 CGVMLQTLIWCKNCKKEVHAC-RKSYDCGERNVEV 172
>gi|16933557 dachsous 1 precursor [Homo sapiens]
Length = 3298
Score = 31.6 bits (70), Expect = 0.56
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 1 MPLALTLLLLSGLGAPGGWG 20
+PL L LLLL G G PG WG
Sbjct: 23 LPLLLLLLLLLGAGVPGAWG 42
>gi|7657196 zinc finger protein 330 [Homo sapiens]
Length = 320
Score = 30.8 bits (68), Expect = 0.96
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 138 CRLLKEEVLDCLHCQRI-TPKCIHKKYCFVDRQPRVALQYQMDSKYP 183
C++L+ E C+ C R+ C+ K CF D R + Q K P
Sbjct: 165 CQVLEAETFKCVSCNRLGQHSCLRCKACFCDDHTRSKVFKQEKGKQP 211
>gi|27597090 suppressor of Ty 6 homolog [Homo sapiens]
Length = 1726
Score = 30.8 bits (68), Expect = 0.96
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 25/114 (21%)
Query: 89 VKNQTQHLMGNSLKDE-------PLLEELVTLRANV---IKEFKKVLISYELKAC---NP 135
V N+ L NS K E P+L + V+L + + EF +V S E C +P
Sbjct: 885 VDNELAILYMNSKKSEAEFRDYPPVLRQAVSLARRIQDPLIEFAQVCSSDEDILCLKFHP 944
Query: 136 KLCRLLKEEVLDCLHCQRITPKCIHKKYCFVDRQPRVALQYQMDSKYPRNQALL 189
++KEE+L+ L+C+ F++R V + +P +QAL+
Sbjct: 945 LQEHVVKEELLNALYCE------------FINRVNEVGVDVNRAIAHPYSQALI 986
>gi|189571693 potassium channel tetramerisation domain containing 6
[Homo sapiens]
Length = 237
Score = 30.0 bits (66), Expect = 1.6
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 18/105 (17%)
Query: 17 GGWGCLQCDPLVLEALGHLRSALIP--SRFQLEQLQARAGA-----------VLMGMEGP 63
G WG + DP+ L GHL + + +R+ L A G + +GP
Sbjct: 4 GDWGYMMTDPVTLNVGGHLYTTSLTTLTRYPDSMLGAMFGGDFPTARDPQGNYFIDRDGP 63
Query: 64 FFRDYALNVFVGKVETNQLDLVASFVKNQTQHLMGNSLKDEPLLE 108
FR Y LN + T++L L F + + + EPL++
Sbjct: 64 LFR-YVLNF----LRTSELTLPLDFKEFDLLRKEADFYQIEPLIQ 103
>gi|189571691 potassium channel tetramerisation domain containing 6
[Homo sapiens]
Length = 237
Score = 30.0 bits (66), Expect = 1.6
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 18/105 (17%)
Query: 17 GGWGCLQCDPLVLEALGHLRSALIP--SRFQLEQLQARAGA-----------VLMGMEGP 63
G WG + DP+ L GHL + + +R+ L A G + +GP
Sbjct: 4 GDWGYMMTDPVTLNVGGHLYTTSLTTLTRYPDSMLGAMFGGDFPTARDPQGNYFIDRDGP 63
Query: 64 FFRDYALNVFVGKVETNQLDLVASFVKNQTQHLMGNSLKDEPLLE 108
FR Y LN + T++L L F + + + EPL++
Sbjct: 64 LFR-YVLNF----LRTSELTLPLDFKEFDLLRKEADFYQIEPLIQ 103
>gi|62243484 sarcoma antigen NY-SAR-41 [Homo sapiens]
Length = 1417
Score = 29.3 bits (64), Expect = 2.8
Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 21/140 (15%)
Query: 20 GCLQCDPLVLEALGHLRSALIPSRFQLEQLQARAGAVLMGMEGPFFRDYALNVFVGKVET 79
GC + + LV+ LR L ++++L A A + D + + +ET
Sbjct: 550 GCCEANKLVIS---ELRIKLAIKEAEIQKLHANLTANQLSQSLITCNDSQESSKLSSLET 606
Query: 80 NQLDL----VASFVKNQTQHLMGNSLKDEPLLEELVTLRANVIKEFKKVLISYELKACNP 135
+ L VA VK+Q QH M + E + LVT I+E + LI E + +
Sbjct: 607 EPVKLGGHQVAESVKDQNQHTMNKQYEKE--RQRLVT----GIEELRTKLIQIEAENSDL 660
Query: 136 KL--------CRLLKEEVLD 147
K+ +L++EE+L+
Sbjct: 661 KVNMAHRTSQFQLIQEELLE 680
>gi|58761492 Rho guanine nucleotide exchange factor (GEF) 10-like
isoform 1 [Homo sapiens]
Length = 1279
Score = 28.5 bits (62), Expect = 4.7
Identities = 13/58 (22%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 94 QHLMGNSLKDEPLLEELVTLRANVIKEFKKVLISYELKACNPKLCRLLKEEVLDCLHC 151
+H++G+ ++ E E + ++++++ L+ E KA + + C+++ V + LHC
Sbjct: 318 RHILGSIVQSEGSYVESLK---RILQDYRNPLMEMEPKALSARKCQVVFFRVKEILHC 372
>gi|74136547 Rho guanine nucleotide exchange factor (GEF) 10-like
isoform 2 [Homo sapiens]
Length = 1240
Score = 28.5 bits (62), Expect = 4.7
Identities = 13/58 (22%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 94 QHLMGNSLKDEPLLEELVTLRANVIKEFKKVLISYELKACNPKLCRLLKEEVLDCLHC 151
+H++G+ ++ E E + ++++++ L+ E KA + + C+++ V + LHC
Sbjct: 279 RHILGSIVQSEGSYVESLK---RILQDYRNPLMEMEPKALSARKCQVVFFRVKEILHC 333
>gi|24307963 zinc finger, DHHC-type containing 1 [Homo sapiens]
Length = 485
Score = 28.5 bits (62), Expect = 4.7
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 187 ALLGILISVSLAVFVFVVIVVSACTYRQNR 216
ALLG+L+ V +A +VFV V+ R NR
Sbjct: 186 ALLGVLLLVLVATYVFVEFFVNPMRLRTNR 215
>gi|51896031 hypothetical protein LOC285636 [Homo sapiens]
Length = 294
Score = 28.5 bits (62), Expect = 4.7
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 79 TNQLDLVASFVKNQTQHLMGNSLKDEPLLEELVTLRANVIKEF-KKVLISYELKACNPKL 137
+N L+L + + T + N L DE E+ + + + F + I + +PK
Sbjct: 61 SNLLELYTQAILDMT-YFEENKLVDEDFPEDSSSQKVKELISFLSEPEILVKENNMHPKH 119
Query: 138 CRLLKEEVLDCLHCQR 153
C LL +E+L+CL +R
Sbjct: 120 CNLLGDELLECLSWRR 135
>gi|4506575 retinal outer segment membrane protein 1 [Homo
sapiens]
Length = 351
Score = 28.1 bits (61), Expect = 6.2
Identities = 26/59 (44%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 3 LALTLLLLSGLGAPGGWGCLQCDPLVLEALGHLRSALIPS-RFQ-LEQLQARAGAVLMG 59
LA L LLS L A G L C +L L HL + L PS +F L Q AGAV +G
Sbjct: 17 LAQGLWLLSWLLALAGGVILLCSGHLLVQLRHLGTFLAPSCQFPVLPQAALAAGAVALG 75
>gi|239754542 PREDICTED: hypothetical protein [Homo sapiens]
Length = 413
Score = 27.7 bits (60), Expect = 8.1
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 29 LEALGHLRSALIPSRFQLEQLQARAGAVL-----MGMEGPFFRDYALNVFVGKVETNQLD 83
LEALG R+ +PS F+ Q + + G E + + + +
Sbjct: 182 LEALGMPRAYRLPSSFERVPCQTESSGPVPTIDRAGTEFDMAAKHLQSQSTPQAQARSKG 241
Query: 84 LVASFV-KNQTQHLMGNSLKDEPLLEELVTLRANVIK 119
V++ + + Q HL G+ L+ E LL E + R V++
Sbjct: 242 SVSALMNEKQKPHLQGSELRTEKLLSEGLGRREKVLE 278
>gi|239749107 PREDICTED: hypothetical protein XP_002346912 [Homo
sapiens]
Length = 413
Score = 27.7 bits (60), Expect = 8.1
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 29 LEALGHLRSALIPSRFQLEQLQARAGAVL-----MGMEGPFFRDYALNVFVGKVETNQLD 83
LEALG R+ +PS F+ Q + + G E + + + +
Sbjct: 182 LEALGMPRAYRLPSSFERVPCQTESSGPVPTIDRAGTEFDMAAKHLQSQSTPQAQARSKG 241
Query: 84 LVASFV-KNQTQHLMGNSLKDEPLLEELVTLRANVIK 119
V++ + + Q HL G+ L+ E LL E + R V++
Sbjct: 242 SVSALMNEKQKPHLQGSELRTEKLLSEGLGRREKVLE 278
>gi|239743136 PREDICTED: hypothetical protein XP_002342759 [Homo
sapiens]
Length = 413
Score = 27.7 bits (60), Expect = 8.1
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 29 LEALGHLRSALIPSRFQLEQLQARAGAVL-----MGMEGPFFRDYALNVFVGKVETNQLD 83
LEALG R+ +PS F+ Q + + G E + + + +
Sbjct: 182 LEALGMPRAYRLPSSFERVPCQTESSGPVPTIDRAGTEFDMAAKHLQSQSTPQAQARSKG 241
Query: 84 LVASFV-KNQTQHLMGNSLKDEPLLEELVTLRANVIK 119
V++ + + Q HL G+ L+ E LL E + R V++
Sbjct: 242 SVSALMNEKQKPHLQGSELRTEKLLSEGLGRREKVLE 278
>gi|239508794 PREDICTED: hypothetical protein [Homo sapiens]
Length = 413
Score = 27.7 bits (60), Expect = 8.1
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 29 LEALGHLRSALIPSRFQLEQLQARAGAVL-----MGMEGPFFRDYALNVFVGKVETNQLD 83
LEALG R+ +PS F+ Q + + G E + + + +
Sbjct: 182 LEALGMPRAYRLPSSFERVPCQTESSGPVPTIDRAGTEFDMAAKHLQSQSTPQAQARSKG 241
Query: 84 LVASFV-KNQTQHLMGNSLKDEPLLEELVTLRANVIK 119
V++ + + Q HL G+ L+ E LL E + R V++
Sbjct: 242 SVSALMNEKQKPHLQGSELRTEKLLSEGLGRREKVLE 278
>gi|21389623 prominin 2 [Homo sapiens]
Length = 834
Score = 27.7 bits (60), Expect = 8.1
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 76 KVETNQLDLVASFVKNQTQHLMGNSLKDEPLLEELVTLRANVIKEFKKVLISYELKAC-- 133
KV+T LDL++S + + L + L+ + LV ++ V+K + L + EL+
Sbjct: 589 KVDTQSLDLLSSAARRDLEALQSSGLQRIHYPDFLVQIQRPVVKTSMEQL-AQELQGLAQ 647
Query: 134 ---NPKLCRLLKEEV--LDCLHCQRITPK 157
N L + L+EE L LH +++ P+
Sbjct: 648 AQDNSVLGQRLQEEAQGLRNLHQEKVVPQ 676
>gi|157885806 chromosome 12 open reading frame 51 [Homo sapiens]
Length = 3996
Score = 27.7 bits (60), Expect = 8.1
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 82 LDLVASFVKNQTQHLMGNSLKDEPLLEELVTLRANVIKEFKKVLISYELKA 132
LDL+ SF K L+G L E L+E L N +K+F+ + EL+A
Sbjct: 3719 LDLLPSFWKT----LVGEPLDPEQDLQEADILTYNYVKKFESINDETELEA 3765
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.141 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,740,619
Number of Sequences: 37866
Number of extensions: 310942
Number of successful extensions: 1044
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1041
Number of HSP's gapped (non-prelim): 19
length of query: 221
length of database: 18,247,518
effective HSP length: 98
effective length of query: 123
effective length of database: 14,536,650
effective search space: 1788007950
effective search space used: 1788007950
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.