Guide to the Human Genome
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Name: C19orf41 Sequence: fasta or formatted (221aa) NCBI GI: 63999117
Description:

hypothetical protein LOC126123

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         15           1
 C cysteine            4.1          9           1
 D aspartate           3.2          7           1
 E glutamate           5.0         11           2
 F phenylalanine       4.1          9           2
 G glycine             5.4         12           2
 H histidine           1.8          4           1
 I isoleucine          3.6          8           1
 K lysine              6.3         14           2
 L leucine            18.1         40           4
 M methionine          2.3          5           1
 N asparagine          3.6          8           1
 P proline             4.5         10           1
 Q glutamine           6.3         14           1
 R arginine            5.4         12           1
 S serine              4.5         10           1
 T threonine           2.7          6           1
 V valine              9.0         20           2
 W tryptophan          0.5          1           1
 Y tyrosine            2.7          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC126123 
IZUMO1                0.034   izumo sperm-egg fusion 1 
DCHS1                 0.017   dachsous 1 precursor 
ZNF330                0.014   zinc finger protein 330 
SUPT6H                0.014   suppressor of Ty 6 homolog 
KCTD6                 0.012   potassium channel tetramerisation domain containing...
KCTD6                 0.012   potassium channel tetramerisation domain containing...
CCDC18                0.010   sarcoma antigen NY-SAR-41 
ARHGEF10L             0.007   Rho guanine nucleotide exchange factor (GEF) 10-like...
ARHGEF10L             0.007   Rho guanine nucleotide exchange factor (GEF) 10-like...
ZDHHC1                0.007   zinc finger, DHHC-type containing 1 
C5orf51               0.007   hypothetical protein LOC285636 
ROM1                  0.007   retinal outer segment membrane protein 1 
LOC100292714          0.007   PREDICTED: hypothetical protein 
LOC100290875          0.007   PREDICTED: hypothetical protein XP_002346912 
LOC100287196          0.007   PREDICTED: hypothetical protein XP_002342759 
LOC100287196          0.007   PREDICTED: hypothetical protein 
PROM2                 0.007   prominin 2 
C12orf51              0.007   chromosome 12 open reading frame 51 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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