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Search of human proteins with 62988276
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|62988276 mitochondrial RNase P protein 3 [Homo sapiens]
(583 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|62988276 mitochondrial RNase P protein 3 [Homo sapiens] 1195 0.0
gi|239757983 PREDICTED: similar to protein-L-isoaspartate (D-asp... 33 0.95
gi|239747889 PREDICTED: hypothetical protein XP_002346467 [Homo ... 33 0.95
gi|13259503 short heterodimer partner [Homo sapiens] 31 2.8
gi|144226251 chitinase 3-like 1 [Homo sapiens] 31 2.8
gi|22748625 zinc finger protein 439 [Homo sapiens] 31 2.8
gi|38683855 pentatricopeptide repeat domain 3 [Homo sapiens] 31 3.6
gi|47717096 killer cell lectin-like receptor subfamily G, member... 31 3.6
gi|169213999 PREDICTED: similar to hCG1778601 isoform 1 [Homo sa... 30 8.0
gi|169214410 PREDICTED: similar to hCG1778601 isoform 1 [Homo sa... 30 8.0
gi|169213416 PREDICTED: hypothetical protein LOC388559 [Homo sap... 30 8.0
gi|7706607 LEM domain containing 3 [Homo sapiens] 30 8.0
gi|38492358 pentatricopeptide repeat domain 1 [Homo sapiens] 30 8.0
>gi|62988276 mitochondrial RNase P protein 3 [Homo sapiens]
Length = 583
Score = 1195 bits (3091), Expect = 0.0
Identities = 583/583 (100%), Positives = 583/583 (100%)
Query: 1 MTFYLFGIRSFPKLWKSPYLGLGPGHSYVSLFLADRCGIRNQQRLFSLKTMSPQNTKATN 60
MTFYLFGIRSFPKLWKSPYLGLGPGHSYVSLFLADRCGIRNQQRLFSLKTMSPQNTKATN
Sbjct: 1 MTFYLFGIRSFPKLWKSPYLGLGPGHSYVSLFLADRCGIRNQQRLFSLKTMSPQNTKATN 60
Query: 61 LIAKARYLRKDEGSNKQVYSVPHFFLAGAAKERSQMNSQTEDHALAPVRNTIQLPTQPLN 120
LIAKARYLRKDEGSNKQVYSVPHFFLAGAAKERSQMNSQTEDHALAPVRNTIQLPTQPLN
Sbjct: 61 LIAKARYLRKDEGSNKQVYSVPHFFLAGAAKERSQMNSQTEDHALAPVRNTIQLPTQPLN 120
Query: 121 SEEWDKLKEDLKENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIVSYDLLVK 180
SEEWDKLKEDLKENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIVSYDLLVK
Sbjct: 121 SEEWDKLKEDLKENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIVSYDLLVK 180
Query: 181 YLYLCVFHMQTSEVIDVFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLLEDIKKVI 240
YLYLCVFHMQTSEVIDVFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLLEDIKKVI
Sbjct: 181 YLYLCVFHMQTSEVIDVFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLLEDIKKVI 240
Query: 241 TPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSNK 300
TPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSNK
Sbjct: 241 TPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSNK 300
Query: 301 LLDILSYLRNNQLYPGESFAHSIKTWFESVPGKQWKGQFTTVRKSGQCSGCGKTIESIQL 360
LLDILSYLRNNQLYPGESFAHSIKTWFESVPGKQWKGQFTTVRKSGQCSGCGKTIESIQL
Sbjct: 301 LLDILSYLRNNQLYPGESFAHSIKTWFESVPGKQWKGQFTTVRKSGQCSGCGKTIESIQL 360
Query: 361 SPEEYECLKGKIMRDVIDGGDQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKV 420
SPEEYECLKGKIMRDVIDGGDQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKV
Sbjct: 361 SPEEYECLKGKIMRDVIDGGDQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKV 420
Query: 421 RESQLLLNVVSQLAKRNLRLLVLGRKHMLRRSSQWSRDEMEEVQKQASCFFADDISEDDP 480
RESQLLLNVVSQLAKRNLRLLVLGRKHMLRRSSQWSRDEMEEVQKQASCFFADDISEDDP
Sbjct: 421 RESQLLLNVVSQLAKRNLRLLVLGRKHMLRRSSQWSRDEMEEVQKQASCFFADDISEDDP 480
Query: 481 FLLYATLHSGNHCRFITRDLMRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQ 540
FLLYATLHSGNHCRFITRDLMRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQ
Sbjct: 481 FLLYATLHSGNHCRFITRDLMRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQ 540
Query: 541 RILSYDTVVQTTGDSWHIPYDEDLVERCSCEVPTKWLCLHQKT 583
RILSYDTVVQTTGDSWHIPYDEDLVERCSCEVPTKWLCLHQKT
Sbjct: 541 RILSYDTVVQTTGDSWHIPYDEDLVERCSCEVPTKWLCLHQKT 583
>gi|239757983 PREDICTED: similar to protein-L-isoaspartate
(D-aspartate) O-methyltransferase domain containing 1
[Homo sapiens]
Length = 132
Score = 32.7 bits (73), Expect = 0.95
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 39 IRNQQRLFSLKTMSPQNTKATNLIAKARYLRKDEGSNKQVYSVPHFFLAGAAKERSQMNS 98
+R R + + +N + LI R LRK Q +P A +R + +
Sbjct: 1 MREHPRALGIPPSAVRNLQDLALIYIRRTLRKFTNDEMQAKGIPQ----RAPPKRKRKRA 56
Query: 99 QTEDHALAPVRNTIQLPTQPLNSEEWDKLKEDLKENTGKTSFES 142
+ V N QL QPL+SEE ++++ED KE K E+
Sbjct: 57 KQRITTYVFVGN--QLIPQPLDSEEDEEMEEDNKEEEEKDHSEA 98
>gi|239747889 PREDICTED: hypothetical protein XP_002346467 [Homo
sapiens]
Length = 132
Score = 32.7 bits (73), Expect = 0.95
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 39 IRNQQRLFSLKTMSPQNTKATNLIAKARYLRKDEGSNKQVYSVPHFFLAGAAKERSQMNS 98
+R R + + +N + LI R LRK Q +P A +R + +
Sbjct: 1 MREHPRALGIPPSAVRNLQDLALIYIRRTLRKFTNDEMQAKGIPQ----RAPPKRKRKRA 56
Query: 99 QTEDHALAPVRNTIQLPTQPLNSEEWDKLKEDLKENTGKTSFES 142
+ V N QL QPL+SEE ++++ED KE K E+
Sbjct: 57 KQRITTYVFVGN--QLIPQPLDSEEDEEMEEDNKEEEEKDHSEA 98
>gi|13259503 short heterodimer partner [Homo sapiens]
Length = 257
Score = 31.2 bits (69), Expect = 2.8
Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Query: 347 QCSGCGKTIESIQLSPEEYECLKGKIM 373
QC C ++ S++LSP+EY CLKG I+
Sbjct: 150 QC--CLESFWSLELSPKEYACLKGTIL 174
>gi|144226251 chitinase 3-like 1 [Homo sapiens]
Length = 383
Score = 31.2 bits (69), Expect = 2.8
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 379 GGDQYRKTTPQELKRFENFIKSRPPFDVV--IDGLNVAKMFPKVRESQLLLNVVSQLAKR 436
G ++ K R FIKS PPF DGL++A ++P R+ Q ++ ++
Sbjct: 102 GSQRFSKIASNTQSR-RTFIKSVPPFLRTHGFDGLDLAWLYPGRRDKQHFTTLIKEMKAE 160
Query: 437 NLRLLVLGRKHML 449
++ G+K +L
Sbjct: 161 FIKEAQPGKKQLL 173
>gi|22748625 zinc finger protein 439 [Homo sapiens]
Length = 499
Score = 31.2 bits (69), Expect = 2.8
Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 10/60 (16%)
Query: 327 FESVPGKQWKGQFTTVRKSGQCSGCGKTIES---------IQLSPEEYECLK-GKIMRDV 376
F S P Q G+ T K QC CGK S I + YEC K GK R V
Sbjct: 419 FRSAPNLQLHGRTHTGEKPYQCKECGKAFRSASQLRIHRRIHTGEKPYECKKCGKAFRYV 478
>gi|38683855 pentatricopeptide repeat domain 3 [Homo sapiens]
Length = 689
Score = 30.8 bits (68), Expect = 3.6
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 240 ITPSKKNYNDC--IQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNY 297
+ P K ++ C I+G + H+ A NLY ELL + + + T A + ++ +
Sbjct: 250 LMPEKNEHSYCTMIRGMVKHRAYEQALNLYTELLNNRLHADVYTFNALIEATVCAINEKF 309
Query: 298 SNKLLDILSYLRN 310
K IL LR+
Sbjct: 310 EEKWSKILELLRH 322
>gi|47717096 killer cell lectin-like receptor subfamily G, member 1
[Homo sapiens]
Length = 189
Score = 30.8 bits (68), Expect = 3.6
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Query: 534 GSKLTFQRILSYDTVVQTTGDSWHIPYDEDLVERCSCEVPTKWLC 578
GS L F RI S ++ VQT G +++ ++ SCEVP W+C
Sbjct: 146 GSPLNFSRISS-NSFVQTCG-----AINKNGLQASSCEVPLHWVC 184
>gi|169213999 PREDICTED: similar to hCG1778601 isoform 1 [Homo
sapiens]
Length = 700
Score = 29.6 bits (65), Expect = 8.0
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 306 SYLRNNQLYPGESFAHSIKTWFESVPGKQWKGQFTTVRKSGQCSGCGKTIESIQLSPEEY 365
+++ NN Y F S+ T + V K+ QF KS CS K + I L ++Y
Sbjct: 167 THISNN--YGNNFFHSSLLTQKQDVHRKEKSFQFNESGKSFNCSSLFKKHQIIHLGEKQY 224
Query: 366 EC 367
+C
Sbjct: 225 KC 226
>gi|169214410 PREDICTED: similar to hCG1778601 isoform 1 [Homo
sapiens]
Length = 700
Score = 29.6 bits (65), Expect = 8.0
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 306 SYLRNNQLYPGESFAHSIKTWFESVPGKQWKGQFTTVRKSGQCSGCGKTIESIQLSPEEY 365
+++ NN Y F S+ T + V K+ QF KS CS K + I L ++Y
Sbjct: 167 THISNN--YGNNFFHSSLLTQKQDVHRKEKSFQFNESGKSFNCSSLFKKHQIIHLGEKQY 224
Query: 366 EC 367
+C
Sbjct: 225 KC 226
>gi|169213416 PREDICTED: hypothetical protein LOC388559 [Homo
sapiens]
Length = 700
Score = 29.6 bits (65), Expect = 8.0
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 306 SYLRNNQLYPGESFAHSIKTWFESVPGKQWKGQFTTVRKSGQCSGCGKTIESIQLSPEEY 365
+++ NN Y F S+ T + V K+ QF KS CS K + I L ++Y
Sbjct: 167 THISNN--YGNNFFHSSLLTQKQDVHRKEKSFQFNESGKSFNCSSLFKKHQIIHLGEKQY 224
Query: 366 EC 367
+C
Sbjct: 225 KC 226
>gi|7706607 LEM domain containing 3 [Homo sapiens]
Length = 911
Score = 29.6 bits (65), Expect = 8.0
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 520 WQ-QGHQLAIVNRFPGSKLTFQRILSYDTVVQTTGDSWHIPYDEDLVERCS 569
WQ Q L N P S +I + V GD WH+ E ++E+CS
Sbjct: 765 WQGQAFHLDRRNSPPNSLTPCLKIRNMFDPVMEIGDQWHLAIQEAILEKCS 815
>gi|38492358 pentatricopeptide repeat domain 1 [Homo sapiens]
Length = 700
Score = 29.6 bits (65), Expect = 8.0
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 8/120 (6%)
Query: 210 PRGYSLLIRGLIHSDRWREALLLLEDI---KKVITPSKKNYNDCIQGALLHQDVNTAWNL 266
P Y L + LI + EAL L E ++ + P + NY I G + A+NL
Sbjct: 136 PYWYFLQCKHLIKEGKLVEALDLFERQMLKEERLQPMESNYTVLIGGCGRVGYLKKAFNL 195
Query: 267 YQELLGHDIVPMLETLKAFFDFGKDIKDDNYSNKLLDILSYLRNNQLYPGESFAHSIKTW 326
Y ++ D+ P T A F+ + + + L S L+ Q ++F ++KT+
Sbjct: 196 YNQMKKRDLEPSDATYTALFNV---CAESPWKDSALQ--SALKLRQQLQAKNFELNLKTY 250
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,686,790
Number of Sequences: 37866
Number of extensions: 975845
Number of successful extensions: 2474
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2472
Number of HSP's gapped (non-prelim): 13
length of query: 583
length of database: 18,247,518
effective HSP length: 108
effective length of query: 475
effective length of database: 14,157,990
effective search space: 6725045250
effective search space used: 6725045250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.