Search of human proteins with 6274550

Search of human proteins with 6274550

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|6274550 NADH dehydrogenase (ubiquinone) 1 beta subcomplex,
9, 22kDa [Homo sapiens]
         (179 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|6274550 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9,...   394   e-110
gi|110815844 zinc finger, CCHC domain containing 7 [Homo sapiens]      33   0.13 
gi|14780902 membrane protein, palmitoylated 4 [Homo sapiens]           33   0.17 
gi|130502140 NEZHA isoform 2 [Homo sapiens]                            32   0.29 
gi|122937255 NEZHA isoform 1 [Homo sapiens]                            32   0.29 
gi|4557489 cone-rod homeobox protein [Homo sapiens]                    32   0.38 
gi|122937243 dual specificity phosphatase 27 [Homo sapiens]            31   0.65 
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]           30   0.85 
gi|24497589 aristaless related homeobox [Homo sapiens]                 30   1.4  
gi|7706687 Enah/Vasp-like [Homo sapiens]                               30   1.4  
gi|21955154 NLR family, pyrin domain containing 12 isoform 2 [Ho...    30   1.4  
gi|34878787 ring finger protein 25 [Homo sapiens]                      30   1.4  
gi|91208437 GEM interacting protein [Homo sapiens]                     29   1.9  
gi|217035105 DnaJ (Hsp40) homolog, subfamily C, member 11 [Homo ...    29   2.5  
gi|40548408 p30 DBC protein [Homo sapiens]                             28   4.2  
gi|24432106 p30 DBC protein [Homo sapiens]                             28   4.2  
gi|66932941 XC chemokine receptor 1 [Homo sapiens]                     28   4.2  
gi|4885339 XC chemokine receptor 1 [Homo sapiens]                      28   4.2  
gi|122937416 hypothetical protein LOC85452 [Homo sapiens]              28   5.5  
gi|94557301 protein kinase, AMP-activated, alpha 1 catalytic sub...    28   5.5  
gi|94557299 protein kinase, AMP-activated, alpha 1 catalytic sub...    28   5.5  
gi|239745089 PREDICTED: golgi autoantigen, golgin subfamily a-li...    28   5.5  
gi|38570054 LYR motif containing 4 [Homo sapiens]                      27   7.2  
gi|6631095 minichromosome maintenance complex component 3 [Homo ...    27   7.2  
gi|211971038 tousled-like kinase 1 isoform 3 [Homo sapiens]            27   7.2  
gi|211971036 tousled-like kinase 1 isoform 2 [Homo sapiens]            27   7.2  
gi|33636698 tousled-like kinase 1 isoform 1 [Homo sapiens]             27   7.2  
gi|17402873 BRCA2 and CDKN1A-interacting protein isoform C [Homo...    27   7.2  
gi|7706581 BRCA2 and CDKN1A-interacting protein isoform BCCIPalp...    27   7.2  
gi|21389613 tektin 4 [Homo sapiens]                                    27   7.2  

>gi|6274550 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9,
           22kDa [Homo sapiens]
          Length = 179

 Score =  394 bits (1012), Expect = e-110
 Identities = 179/179 (100%), Positives = 179/179 (100%)

Query: 1   MAFLASGPYLTHQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKA 60
           MAFLASGPYLTHQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKA
Sbjct: 1   MAFLASGPYLTHQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKA 60

Query: 61  TQLLKEAEEEFWYRQHPQPYIFPDSPGGTSYERYDCYKVPEWCLDDWHPSEKAMYPDYFA 120
           TQLLKEAEEEFWYRQHPQPYIFPDSPGGTSYERYDCYKVPEWCLDDWHPSEKAMYPDYFA
Sbjct: 61  TQLLKEAEEEFWYRQHPQPYIFPDSPGGTSYERYDCYKVPEWCLDDWHPSEKAMYPDYFA 120

Query: 121 KREQWKKLRRESWEREVKQLQEETPPGGPLTEALPPARKEGDLPPLWWYIVTRPRERPM 179
           KREQWKKLRRESWEREVKQLQEETPPGGPLTEALPPARKEGDLPPLWWYIVTRPRERPM
Sbjct: 121 KREQWKKLRRESWEREVKQLQEETPPGGPLTEALPPARKEGDLPPLWWYIVTRPRERPM 179


>gi|110815844 zinc finger, CCHC domain containing 7 [Homo sapiens]
          Length = 543

 Score = 33.1 bits (74), Expect = 0.13
 Identities = 33/140 (23%), Positives = 52/140 (37%), Gaps = 16/140 (11%)

Query: 26  HLESWCVQRDKY-----RYFACLMRARFEEHKNEKDMAKATQLLKEAEEEFWYRQHPQPY 80
           H    C +R+ Y       F C    ++E  + EK + +  ++LK+          P+P 
Sbjct: 358 HYGHECPEREVYDPSPVSPFICYYDDKYEIQEREKRLKQKIKVLKKNGVI------PEPS 411

Query: 81  IFPDSPGGTSYERYDCYKV-PEWCLDDWHPSEKAMYPDYFAKREQWKKLRRESWEREVKQ 139
             P          +D  K    W  + W    K    +   K   W+K R+    REV  
Sbjct: 412 KLPYIKAANENPHHDIRKGRASWKSNRWPQENKETQKEMKNKNRNWEKHRKADRHREV-- 469

Query: 140 LQEETPPGGPLTEALPPARK 159
             +E  P GP T + P + K
Sbjct: 470 --DEDFPRGPKTYSSPGSFK 487


>gi|14780902 membrane protein, palmitoylated 4 [Homo sapiens]
          Length = 637

 Score = 32.7 bits (73), Expect = 0.17
 Identities = 16/49 (32%), Positives = 24/49 (48%)

Query: 57  MAKATQLLKEAEEEFWYRQHPQPYIFPDSPGGTSYERYDCYKVPEWCLD 105
           +  +  LLK  + EFW+ Q  QP+    S    S E  D  K+ E C++
Sbjct: 301 LVPSNHLLKRKQREFWWSQPYQPHTCLKSTLSISMEEEDDMKIDEKCVE 349


>gi|130502140 NEZHA isoform 2 [Homo sapiens]
          Length = 1249

 Score = 32.0 bits (71), Expect = 0.29
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 121 KREQWKKLRRESWEREVKQL-QEETPPGGPLTEALPPA 157
           +R+QW+++ +E    E  +L QEE P   PL  A+P A
Sbjct: 919 RRKQWQEVEKEQRREEAARLAQEEAPGPAPLVSAVPMA 956


>gi|122937255 NEZHA isoform 1 [Homo sapiens]
          Length = 1276

 Score = 32.0 bits (71), Expect = 0.29
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 121 KREQWKKLRRESWEREVKQL-QEETPPGGPLTEALPPA 157
           +R+QW+++ +E    E  +L QEE P   PL  A+P A
Sbjct: 946 RRKQWQEVEKEQRREEAARLAQEEAPGPAPLVSAVPMA 983


>gi|4557489 cone-rod homeobox protein [Homo sapiens]
          Length = 299

 Score = 31.6 bits (70), Expect = 0.38
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 13/66 (19%)

Query: 112 KAMYPDYFAKREQ-------------WKKLRRESWEREVKQLQEETPPGGPLTEALPPAR 158
           K  YPD +A+ E              W K RR    ++ +Q +++  P G   +A P  R
Sbjct: 60  KTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQRQQQKQQQQPPGGQAKARPAKR 119

Query: 159 KEGDLP 164
           K G  P
Sbjct: 120 KAGTSP 125


>gi|122937243 dual specificity phosphatase 27 [Homo sapiens]
          Length = 1158

 Score = 30.8 bits (68), Expect = 0.65
 Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 14/116 (12%)

Query: 34   RDKYRYFACLMRARFEEHKNEKDMAKATQLLKEAEEEFWYRQHPQPYIFPDSPGGTSYER 93
            R   R+ +   R   E HK  +     T   +E        + P+PY F  +P  +  E 
Sbjct: 1002 RSTSRFSSSSTREGREMHKFSRSTYNETSSSRE--------ESPEPYFFRRTPESSEREE 1053

Query: 94   YDCYKVPEWCLD-DW---HPSEKAMYPDYFAKREQWKKLRR--ESWEREVKQLQEE 143
                + P W    DW     S K+ + ++ AKR+  +   R  E  E+E  + +EE
Sbjct: 1054 SPEPQRPNWARSRDWEDVEESSKSDFSEFGAKRKFTQSFMRSEEEGEKERTENREE 1109


>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
          Length = 283

 Score = 30.4 bits (67), Expect = 0.85
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 136 EVKQLQEETPPGGPLTEALPPARKEGDLPP 165
           E+  L    PPGG +  A P A +EG LPP
Sbjct: 234 ELLALPPPPPPGGAVPPAAPVAAREGRLPP 263


>gi|24497589 aristaless related homeobox [Homo sapiens]
          Length = 562

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 22/74 (29%), Positives = 27/74 (36%), Gaps = 19/74 (25%)

Query: 111 EKAMYPDYFAKREQ-------------WKKLRRESWEREVKQLQEETPPG----GPL--T 151
           +K  YPD F + E              W + RR  W +  K   +  PPG    GPL  T
Sbjct: 348 QKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREKAGAQTHPPGLPFPGPLSAT 407

Query: 152 EALPPARKEGDLPP 165
             L P       PP
Sbjct: 408 HPLSPYLDASPFPP 421


>gi|7706687 Enah/Vasp-like [Homo sapiens]
          Length = 418

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 16/43 (37%), Positives = 20/43 (46%)

Query: 123 EQWKKLRRESWEREVKQLQEETPPGGPLTEALPPARKEGDLPP 165
           EQ ++ R+ES ER         PPG P + A  P    G  PP
Sbjct: 145 EQHQQQRQESLERRTSATGPILPPGHPSSAASAPVSCSGPPPP 187


>gi|21955154 NLR family, pyrin domain containing 12 isoform 2 [Homo
           sapiens]
          Length = 1061

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 10/62 (16%)

Query: 98  KVPEWCLDDWHPSEKA-MYPDYFAKREQWKKL--------RRESWEREVKQ-LQEETPPG 147
           K+P   ++   P E A +   +F   E W+          R++ WER  ++ L  +TPPG
Sbjct: 42  KIPWGSMEKAGPLEMAQLLITHFGPEEAWRLALSTFERINRKDLWERGQREDLVRDTPPG 101

Query: 148 GP 149
           GP
Sbjct: 102 GP 103


>gi|34878787 ring finger protein 25 [Homo sapiens]
          Length = 459

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 38/159 (23%), Positives = 62/159 (38%), Gaps = 13/159 (8%)

Query: 6   SGPYLTHQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFE-EHKNEKDMAKATQLL 64
           S   L  Q++  RLY+R         ++ ++ RYF  L +     E ++  D++K +Q  
Sbjct: 228 SAESLRQQEERKRLYQRQQERGGIIDLEAERNRYFISLQQPPAPAEPESAVDVSKGSQPP 287

Query: 65  KEAEEEFWYRQHPQPYIFPDSPGGTSYERYDCYKVPEWCLDDWHPSE--KAMYPDYFAKR 122
                E       Q  + P  P  T   ++ C K+P    +     E  KAM       R
Sbjct: 288 STLAAELSTSPAVQSTLPPPLPVAT---QHICEKIPGTRSNQQRLGETQKAMLDPPKPSR 344

Query: 123 EQWKKLRRESWE-------REVKQLQEETPPGGPLTEAL 154
             W++  R   +       +  +  QE  PP GPL E +
Sbjct: 345 GPWRQPERRHPKGGECHAPKGTRDTQELPPPEGPLKEPM 383


>gi|91208437 GEM interacting protein [Homo sapiens]
          Length = 970

 Score = 29.3 bits (64), Expect = 1.9
 Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 24/144 (16%)

Query: 10  LTHQQKVLRLYKR------ALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQL 63
           LT ++  LRL +       AL + ++W       RY   L+    +    E + AK+T  
Sbjct: 78  LTGEELDLRLIRTKGGVDAALEYAKTWS------RYAKELLAWTEKRASYELEFAKSTMK 131

Query: 64  LKEAEEEFWYRQHPQP--YIFPDSPGGTSYERYDCYKVPEWCLDDWHPSEKAMYPDYFAK 121
           + EA +    +Q   P  YI+      T +  +D   +    ++     ++  Y    AK
Sbjct: 132 IAEAGKVSIQQQSHMPLQYIY------TLFLEHDL-SLGTLAMETVAQQKRDYYQPLAAK 184

Query: 122 R---EQWKKLRRESWEREVKQLQE 142
           R   E+W+K  +E W +E K++ E
Sbjct: 185 RTEIEKWRKEFKEQWMKEQKRMNE 208


>gi|217035105 DnaJ (Hsp40) homolog, subfamily C, member 11 [Homo
           sapiens]
          Length = 559

 Score = 28.9 bits (63), Expect = 2.5
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 5/58 (8%)

Query: 94  YDCYKVPEWCLDDWHPSEKAMYPDYFAKREQWKKLRRESWEREVKQLQEETPPGGPLT 151
           YD Y      ++ W   E+   P     RE++++L+R   ERE ++LQ+ T P G ++
Sbjct: 78  YDIYGKRGLEMEGWEVVERRRTPAEI--REEFERLQR---EREERRLQQRTNPKGTIS 130


>gi|40548408 p30 DBC protein [Homo sapiens]
          Length = 923

 Score = 28.1 bits (61), Expect = 4.2
 Identities = 15/45 (33%), Positives = 24/45 (53%)

Query: 120 AKREQWKKLRRESWEREVKQLQEETPPGGPLTEALPPARKEGDLP 164
           A +E+  K      E  VK+ ++E    GP TE+  P +++G LP
Sbjct: 578 AAKEEATKEEEAIKEEVVKEPKDEAQNEGPATESEAPLKEDGLLP 622


>gi|24432106 p30 DBC protein [Homo sapiens]
          Length = 923

 Score = 28.1 bits (61), Expect = 4.2
 Identities = 15/45 (33%), Positives = 24/45 (53%)

Query: 120 AKREQWKKLRRESWEREVKQLQEETPPGGPLTEALPPARKEGDLP 164
           A +E+  K      E  VK+ ++E    GP TE+  P +++G LP
Sbjct: 578 AAKEEATKEEEAIKEEVVKEPKDEAQNEGPATESEAPLKEDGLLP 622


>gi|66932941 XC chemokine receptor 1 [Homo sapiens]
          Length = 333

 Score = 28.1 bits (61), Expect = 4.2
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 64  LKEAEEEFWY--RQHPQPYIFPDSPGGTSYERYDCY 97
           LK    +FW+   Q P P   P SPG  +YE    Y
Sbjct: 298 LKHVLRQFWFCRLQAPSPASIPHSPGAFAYEGASFY 333


>gi|4885339 XC chemokine receptor 1 [Homo sapiens]
          Length = 333

 Score = 28.1 bits (61), Expect = 4.2
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 64  LKEAEEEFWY--RQHPQPYIFPDSPGGTSYERYDCY 97
           LK    +FW+   Q P P   P SPG  +YE    Y
Sbjct: 298 LKHVLRQFWFCRLQAPSPASIPHSPGAFAYEGASFY 333


>gi|122937416 hypothetical protein LOC85452 [Homo sapiens]
          Length = 762

 Score = 27.7 bits (60), Expect = 5.5
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 2   AFLASGPYLTHQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKAT 61
           A LA       ++ +L   + A RHL    V + + +      RA  EE K  K    + 
Sbjct: 310 AELAEQRVQAEKKAILAQGRDAFRHL----VHQRRRQELEAQKRAFEEEQKLRKQEIISR 365

Query: 62  QLLKEAEEEFWYRQHP 77
            L +EAEEE   +QHP
Sbjct: 366 ILKEEAEEEKRKKQHP 381


>gi|94557301 protein kinase, AMP-activated, alpha 1 catalytic
           subunit isoform 1 [Homo sapiens]
          Length = 559

 Score = 27.7 bits (60), Expect = 5.5
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 57  MAKATQLLKEAEEEFWYRQHPQPYIFPDSPGGTS 90
           M +AT  +K+  E  W++Q    Y+FP+ P  +S
Sbjct: 265 MKRAT--IKDIREHEWFKQDLPKYLFPEDPSYSS 296


>gi|94557299 protein kinase, AMP-activated, alpha 1 catalytic
           subunit isoform 2 [Homo sapiens]
          Length = 574

 Score = 27.7 bits (60), Expect = 5.5
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 57  MAKATQLLKEAEEEFWYRQHPQPYIFPDSPGGTS 90
           M +AT  +K+  E  W++Q    Y+FP+ P  +S
Sbjct: 280 MKRAT--IKDIREHEWFKQDLPKYLFPEDPSYSS 311


>gi|239745089 PREDICTED: golgi autoantigen, golgin subfamily a-like
           [Homo sapiens]
          Length = 828

 Score = 27.7 bits (60), Expect = 5.5
 Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 23/136 (16%)

Query: 10  LTHQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKEAEE 69
           +  Q+K LR  ++ LR  E    ++ K R          +  + E+ M +  + ++E EE
Sbjct: 278 MRRQEKRLREQEKELREQEKELREQKKLR------EQEEQMQEQEEKMWEQEEKMREQEE 331

Query: 70  EFWYRQHPQPYIFPDSPGGTSYERYDCYKVPEWCLDDWHPSEKAMYPDYFAKREQWKKLR 129
           + W ++               +E+    +  E  + D    E+ M+      RE+ +++R
Sbjct: 332 KMWRQEE------------RLWEQEKQMREQEQKMRD---QEERMWEQDERLREKEERMR 376

Query: 130 RES--WEREVKQLQEE 143
            +   WE+E K  +EE
Sbjct: 377 EQEKMWEQEEKMQEEE 392


>gi|38570054 LYR motif containing 4 [Homo sapiens]
          Length = 91

 Score = 27.3 bits (59), Expect = 7.2
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 15 KVLRLYKRALRHLESWCVQRDKYRYFACL-MRARFEEHKNEKDMAKATQLLKEAEEE 70
          +VL LY+  LR  ES       YR +A   +R  F E+KN KD  +   L+ +A+ +
Sbjct: 8  QVLSLYRAMLR--ESKRFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQTLVNKAKRD 62


>gi|6631095 minichromosome maintenance complex component 3 [Homo
           sapiens]
          Length = 808

 Score = 27.3 bits (59), Expect = 7.2
 Identities = 14/64 (21%), Positives = 32/64 (50%)

Query: 32  VQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKEAEEEFWYRQHPQPYIFPDSPGGTSY 91
           V+  +Y YF  ++    +  K  +D ++     ++++E+   ++  +    PD+  G SY
Sbjct: 646 VELVQYAYFKKVLEKEKKRKKRSEDESETEDEEEKSQEDQEQKRKRRKTRQPDAKDGDSY 705

Query: 92  ERYD 95
           + YD
Sbjct: 706 DPYD 709


>gi|211971038 tousled-like kinase 1 isoform 3 [Homo sapiens]
          Length = 670

 Score = 27.3 bits (59), Expect = 7.2
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 5/44 (11%)

Query: 121 KREQWKKLRRESWEREVKQLQEETPP-----GGPLTEALPPARK 159
           K+++W   +RE  ER+ K L +  PP       P T + P  RK
Sbjct: 231 KQQEWVNQQREDIERQRKLLAKRKPPTANNSQAPSTNSEPKQRK 274


>gi|211971036 tousled-like kinase 1 isoform 2 [Homo sapiens]
          Length = 718

 Score = 27.3 bits (59), Expect = 7.2
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 5/44 (11%)

Query: 121 KREQWKKLRRESWEREVKQLQEETPP-----GGPLTEALPPARK 159
           K+++W   +RE  ER+ K L +  PP       P T + P  RK
Sbjct: 279 KQQEWVNQQREDIERQRKLLAKRKPPTANNSQAPSTNSEPKQRK 322


>gi|33636698 tousled-like kinase 1 isoform 1 [Homo sapiens]
          Length = 766

 Score = 27.3 bits (59), Expect = 7.2
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 5/44 (11%)

Query: 121 KREQWKKLRRESWEREVKQLQEETPP-----GGPLTEALPPARK 159
           K+++W   +RE  ER+ K L +  PP       P T + P  RK
Sbjct: 327 KQQEWVNQQREDIERQRKLLAKRKPPTANNSQAPSTNSEPKQRK 370


>gi|17402873 BRCA2 and CDKN1A-interacting protein isoform C [Homo
           sapiens]
          Length = 292

 Score = 27.3 bits (59), Expect = 7.2
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 8/58 (13%)

Query: 39  YFACLMRARFEE------HKNEKDMAKATQLLKEAEEEFWYRQHPQPYIF--PDSPGG 88
           YF  L+   F E       K   +  KA  +   AEEEF+Y +  +P +   PD+  G
Sbjct: 217 YFYLLISKTFVEAGKNNSKKKPSNKKKAALMFANAEEEFFYEEQGKPEVLGGPDTRRG 274


>gi|7706581 BRCA2 and CDKN1A-interacting protein isoform BCCIPalpha
           [Homo sapiens]
          Length = 322

 Score = 27.3 bits (59), Expect = 7.2
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 8/58 (13%)

Query: 39  YFACLMRARFEE------HKNEKDMAKATQLLKEAEEEFWYRQHPQPYIF--PDSPGG 88
           YF  L+   F E       K   +  KA  +   AEEEF+Y +  +P +   PD+  G
Sbjct: 217 YFYLLISKTFVEAGKNNSKKKPSNKKKAALMFANAEEEFFYEEQGKPEVLGGPDTRRG 274


>gi|21389613 tektin 4 [Homo sapiens]
          Length = 435

 Score = 27.3 bits (59), Expect = 7.2
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 5/48 (10%)

Query: 97  YKVPEWCLDDWHPSEKAMYPDYFAKREQWKKLRRESWEREVKQLQEET 144
           ++  ++ L++W  +  A Y   FA R+Q ++ R ES     +QL  ET
Sbjct: 34  FRTSKYLLEEWFQNCYARYHQAFADRDQSERQRHES-----QQLATET 76


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.136    0.461 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,145,342
Number of Sequences: 37866
Number of extensions: 460583
Number of successful extensions: 1617
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1593
Number of HSP's gapped (non-prelim): 50
length of query: 179
length of database: 18,247,518
effective HSP length: 96
effective length of query: 83
effective length of database: 14,612,382
effective search space: 1212827706
effective search space used: 1212827706
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.