Guide to the Human Genome
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Name: EPGN Sequence: fasta or formatted (133aa) NCBI GI: 61806622
Description:

epithelial mitogen

Referenced in:

Epidermal Growth Factor

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         13           2
 C cysteine            5.3          7           1
 D aspartate           3.0          4           1
 E glutamate           7.5         10           2
 F phenylalanine       4.5          6           1
 G glycine             6.8          9           1
 H histidine           3.8          5           2
 I isoleucine          9.0         12           1
 K lysine              4.5          6           1
 L leucine            10.5         14           3
 M methionine          1.5          2           1
 N asparagine          3.0          4           1
 P proline             3.0          4           2
 Q glutamine           1.5          2           2
 R arginine            3.0          4           1
 S serine              4.5          6           1
 T threonine           6.8          9           1
 V valine              5.3          7           1
 W tryptophan          0.0          0           0
 Y tyrosine            6.8          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   epithelial mitogen 
TMEFF1                0.124   transmembrane protein with EGF-like and two follista...
EREG                  0.120   epiregulin preproprotein 
TGFA                  0.116   transforming growth factor, alpha isoform 2 
NRG2                  0.116   neuregulin 2 isoform 2 
TGFA                  0.112   transforming growth factor, alpha isoform 1 
NRG2                  0.104   neuregulin 2 isoform 4 
NRG1                  0.100   neuregulin 1 isoform ndf43b 
NRG1                  0.100   neuregulin 1 isoform HRG-beta2b 
NRG1                  0.100   neuregulin 1 isoform HRG-beta2 
NRG4                  0.088   neuregulin 4 
NRG1                  0.088   neuregulin 1 isoform HRG-beta1b 
NRG1                  0.088   neuregulin 1 isoform HRG-beta1 
HBEGF                 0.084   heparin-binding EGF-like growth factor 
NRG2                  0.084   neuregulin 2 isoform 1 
NRG1                  0.084   neuregulin 1 isoform HRG-beta1d 
NRG1                  0.084   neuregulin 1 isoform HRG-beta1c 
TMEFF2                0.084   transmembrane protein with EGF-like and two follista...
NRG2                  0.084   neuregulin 2 isoform 3 
NRG1                  0.076   neuregulin 1 isoform HRG-alpha 
NRG1                  0.076   neuregulin 1 isoform ndf43 
NRG1                  0.072   neuregulin 1 isoform ndf43c 
EGF                   0.072   epidermal growth factor (beta-urogastrone) 
AREG                  0.064   amphiregulin preproprotein 
AREGB                 0.064   PREDICTED: amphiregulin B 
BTC                   0.056   betacellulin 
NRG1                  0.052   neuregulin 1 isoform HRG-beta3 
NRG1                  0.048   neuregulin 1 isoform HRG-beta3b 
NRG1                  0.048   neuregulin 1 isoform SMDF 
NRG1                  0.048   neuregulin 1 isoform GGF2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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