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Search of human proteins with 13470082
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13470082 protocadherin gamma subfamily B, 4 isoform 1
precursor [Homo sapiens]
(923 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13470082 protocadherin gamma subfamily B, 4 isoform 1 precurs... 1828 0.0
gi|14270499 protocadherin gamma subfamily B, 4 isoform 2 precurs... 1573 0.0
gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precurs... 1565 0.0
gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precurs... 1321 0.0
gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precurs... 1320 0.0
gi|14270505 protocadherin gamma subfamily B, 5 isoform 2 precurs... 1317 0.0
gi|11128035 protocadherin gamma subfamily B, 2 isoform 1 precurs... 1293 0.0
gi|11128033 protocadherin gamma subfamily B, 3 isoform 1 precurs... 1285 0.0
gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precurs... 1281 0.0
gi|14270502 protocadherin gamma subfamily B, 6 isoform 2 precurs... 1074 0.0
gi|14270490 protocadherin gamma subfamily B, 1 isoform 2 precurs... 1071 0.0
gi|14270493 protocadherin gamma subfamily B, 2 isoform 2 precurs... 1047 0.0
gi|14270496 protocadherin gamma subfamily B, 3 isoform 2 precurs... 1038 0.0
gi|14270508 protocadherin gamma subfamily B, 7 isoform 2 precurs... 1030 0.0
gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precurs... 929 0.0
gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precur... 921 0.0
gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precurs... 917 0.0
gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precurs... 915 0.0
gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precurs... 911 0.0
gi|11056030 protocadherin gamma subfamily A, 2 isoform 1 precurs... 905 0.0
gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precurs... 900 0.0
gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precurs... 899 0.0
gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precur... 892 0.0
gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precurs... 891 0.0
gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precurs... 880 0.0
gi|14270484 protocadherin gamma subfamily A, 8 isoform 1 precurs... 880 0.0
gi|11128023 protocadherin gamma subfamily C, 5 isoform 1 precurs... 821 0.0
gi|14277675 protocadherin gamma subfamily C, 3 isoform 1 precurs... 820 0.0
gi|11128025 protocadherin gamma subfamily C, 4 isoform 1 precurs... 805 0.0
gi|14196457 protocadherin gamma subfamily A, 12 isoform 2 precur... 687 0.0
>gi|13470082 protocadherin gamma subfamily B, 4 isoform 1 precursor
[Homo sapiens]
Length = 923
Score = 1828 bits (4734), Expect = 0.0
Identities = 923/923 (100%), Positives = 923/923 (100%)
Query: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE
Sbjct: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
Query: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN
Sbjct: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
Query: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSL 180
VEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSL
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSL 180
Query: 181 INKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAP 240
INKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAP
Sbjct: 181 INKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAP 240
Query: 241 VFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSFSEASQITQFDLNSNTGEIT 300
VFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSFSEASQITQFDLNSNTGEIT
Sbjct: 241 VFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSFSEASQITQFDLNSNTGEIT 300
Query: 301 VLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDAEL 360
VLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDAEL
Sbjct: 301 VLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDAEL 360
Query: 361 GTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNITV 420
GTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNITV
Sbjct: 361 GTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNITV 420
Query: 421 TATDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPDLG 480
TATDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPDLG
Sbjct: 421 TATDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPDLG 480
Query: 481 PNGQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSPAL 540
PNGQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSPAL
Sbjct: 481 PNGQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSPAL 540
Query: 541 SANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGHNA 600
SANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGHNA
Sbjct: 541 SANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGHNA 600
Query: 601 WLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATLHL 660
WLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATLHL
Sbjct: 601 WLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATLHL 660
Query: 661 VFADSLQEVLPDITDRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSSPA 720
VFADSLQEVLPDITDRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSSPA
Sbjct: 661 VFADSLQEVLPDITDRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSSPA 720
Query: 721 SWSCFQPGLCVKSESVVPPNYSEGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCG 780
SWSCFQPGLCVKSESVVPPNYSEGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCG
Sbjct: 721 SWSCFQPGLCVKSESVVPPNYSEGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCG 780
Query: 781 DSSGALFPLCNSSELTSHQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQ 840
DSSGALFPLCNSSELTSHQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQ
Sbjct: 781 DSSGALFPLCNSSELTSHQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQ 840
Query: 841 AMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAG 900
AMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAG
Sbjct: 841 AMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAG 900
Query: 901 KRDGKAPAGGNGNKKKSGKKEKK 923
KRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 901 KRDGKAPAGGNGNKKKSGKKEKK 923
>gi|14270499 protocadherin gamma subfamily B, 4 isoform 2 precursor
[Homo sapiens]
Length = 803
Score = 1573 bits (4074), Expect = 0.0
Identities = 799/799 (100%), Positives = 799/799 (100%)
Query: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE
Sbjct: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
Query: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN
Sbjct: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
Query: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSL 180
VEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSL
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSL 180
Query: 181 INKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAP 240
INKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAP
Sbjct: 181 INKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAP 240
Query: 241 VFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSFSEASQITQFDLNSNTGEIT 300
VFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSFSEASQITQFDLNSNTGEIT
Sbjct: 241 VFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSFSEASQITQFDLNSNTGEIT 300
Query: 301 VLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDAEL 360
VLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDAEL
Sbjct: 301 VLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDAEL 360
Query: 361 GTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNITV 420
GTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNITV
Sbjct: 361 GTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNITV 420
Query: 421 TATDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPDLG 480
TATDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPDLG
Sbjct: 421 TATDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPDLG 480
Query: 481 PNGQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSPAL 540
PNGQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSPAL
Sbjct: 481 PNGQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSPAL 540
Query: 541 SANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGHNA 600
SANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGHNA
Sbjct: 541 SANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGHNA 600
Query: 601 WLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATLHL 660
WLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATLHL
Sbjct: 601 WLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATLHL 660
Query: 661 VFADSLQEVLPDITDRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSSPA 720
VFADSLQEVLPDITDRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSSPA
Sbjct: 661 VFADSLQEVLPDITDRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSSPA 720
Query: 721 SWSCFQPGLCVKSESVVPPNYSEGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCG 780
SWSCFQPGLCVKSESVVPPNYSEGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCG
Sbjct: 721 SWSCFQPGLCVKSESVVPPNYSEGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCG 780
Query: 781 DSSGALFPLCNSSELTSHQ 799
DSSGALFPLCNSSELTSHQ
Sbjct: 781 DSSGALFPLCNSSELTSHQ 799
>gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precursor
[Homo sapiens]
Length = 923
Score = 1565 bits (4053), Expect = 0.0
Identities = 792/925 (85%), Positives = 844/925 (91%), Gaps = 4/925 (0%)
Query: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE
Sbjct: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
Query: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN
Sbjct: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
Query: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSL 180
VEIEDINDHTPKFTQNSFELQISESAQPGTRFIL A DADIG N+LQ Y+LS + FSL
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
Query: 181 INKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAP 240
I KEK DGSKYPE+ L+ LDRE+Q + L LTALD G PPLS T ++ + VTDANDN P
Sbjct: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
Query: 241 VFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSFSEASQITQFDLNSNTGEIT 300
VF++DVYRVSL ENV PGTTVLQV+ATDQDEG+N+EIT+SF QI F LNS +GEIT
Sbjct: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQI--FSLNSKSGEIT 298
Query: 301 VLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDAEL 360
LDFEE KEYS+V+E RDGGG++AQCTVE+ + DENDN+PEV F SL +I+E+A
Sbjct: 299 TQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVP 358
Query: 361 GTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNITV 420
GT IAL+K+ D+DS NGEV C+L+G+VPFKI++SS+N+YKLVTD LDREQ PEYN+T+
Sbjct: 359 GTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTI 418
Query: 421 TATDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPDLG 480
TATDRGKPPLSSS S+ LHI DVNDNAPVF Q+SY+V V ENNPPGASI+QV ASD DLG
Sbjct: 419 TATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLG 478
Query: 481 PNGQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSPAL 540
NGQVSY IMASDLE L+SYVS+SA+SGVVFAQRAFD+EQLR FELTLQARDQGSPAL
Sbjct: 479 LNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPAL 538
Query: 541 SANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGHNA 600
SANVSLRVLV DRNDNAPRVLYPALGPDGSALFDMVP AAEPGYLVTKVVAVDADSGHNA
Sbjct: 539 SANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNA 598
Query: 601 WLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATLHL 660
WLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDA RQRLLVAVRDGGQPPLSATATLHL
Sbjct: 599 WLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHL 658
Query: 661 VFADSLQEVLPDITDRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSSPA 720
VFADSLQEVLPDITDRP PSD QAELQFYLVVALALISVLFL+A+ILA+ALRLRRSSSPA
Sbjct: 659 VFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSSPA 718
Query: 721 SWSCFQPGLCVKSESVVPPNYSEGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCG 780
+WSCFQPGLCVKS VVPPNYS+GTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCG
Sbjct: 719 AWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCG 778
Query: 781 DSSGALFPLCNSSELTSHQ--QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEM 838
DSSGALFPLCNSSE TSH QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEM
Sbjct: 779 DSSGALFPLCNSSESTSHPELQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEM 838
Query: 839 LQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNA 898
LQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNA
Sbjct: 839 LQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNA 898
Query: 899 AGKRDGKAPAGGNGNKKKSGKKEKK 923
AGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 899 AGKRDGKAPAGGNGNKKKSGKKEKK 923
>gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precursor
[Homo sapiens]
Length = 930
Score = 1321 bits (3418), Expect = 0.0
Identities = 669/930 (71%), Positives = 761/930 (81%), Gaps = 7/930 (0%)
Query: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
MG + RA VLF LL LF P L E IRY IPEE+ KGSVVGNLA DLG SV +
Sbjct: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
Query: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
+ RKLRVS+EK +F+V AESG+LLV +R+DRE+IC ++ C L+ EAV ENPLN +HV
Sbjct: 61 VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
Query: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSL 180
V IED+NDH P+F + L+I ESA GTR L A D DI N++++Y+++ + +FSL
Sbjct: 121 VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL 180
Query: 181 INKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAP 240
+ + SDG KYPE+ L+ LDRE+Q+S+ L LTALD G PP S+TA I + V D NDN P
Sbjct: 181 MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP 240
Query: 241 VFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSFSEASQITQ--FDLNSNTGE 298
VFS+D YR+SLSEN+ PG+ VLQVTATDQDEGVNAEI + F +Q T+ F L+ TG
Sbjct: 241 VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM 300
Query: 299 ITVLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDA 358
I + DFE+V+ Y++ +EA+DGGG+ QC V +E++DENDN+PE+I SL + I+E++
Sbjct: 301 IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS 360
Query: 359 ELGTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNI 418
G +AL K RD D NGEV C +E D+PFKI +SS N YKLVTD LDREQ PEYN+
Sbjct: 361 PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV 420
Query: 419 TVTATDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPD 478
T+ ATDRGKPPLSSS SITL++ D+NDNAPVF Q+SY+VHVAENNPPGASI+QV ASDPD
Sbjct: 421 TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD 480
Query: 479 LGPNGQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSP 538
LG NG +SY I+ASDLE +SSYVS+SA+SGVVFAQRAFDHEQLRAF LTLQARD GSP
Sbjct: 481 LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP 540
Query: 539 ALSANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGH 598
LSANVSLRVLV DRNDNAPRVLYPALGPDGSA FDMVP +AEPGYLVTKVVAVDADSGH
Sbjct: 541 TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH 600
Query: 599 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATL 658
NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDA RQRLLVAVRDGGQPPLSATATL
Sbjct: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
Query: 659 HLVFADSLQEVLPDITDRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSS 718
HLVFAD+LQE+LPD++DRP SD QAELQFYLVVALALISVLFL+A+ILAIALRLRRS S
Sbjct: 661 HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS 720
Query: 719 PASWSCFQPGLCVKSESVVPPNYSEGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDIL 778
PA+W CF PGLCVKS VVPPNYSEGTLPYSYNLC+AHTG EFNFLKCS L S +D++
Sbjct: 721 PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCIAHTGTKEFNFLKCSVPLHSNEDMV 780
Query: 779 CGDSSGALFPLCNSSELTSH-----QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ 833
C S GAL P +LTSH QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ
Sbjct: 781 CSVSPGALIPPHGGEDLTSHPETLTSQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ 840
Query: 834 FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA 893
FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA
Sbjct: 841 FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA 900
Query: 894 TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 923
TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 901 TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 930
>gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precursor
[Homo sapiens]
Length = 927
Score = 1320 bits (3416), Expect = 0.0
Identities = 678/919 (73%), Positives = 767/919 (83%), Gaps = 16/919 (1%)
Query: 16 VLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSEKPYF 75
VLF FLLSLFC A+ +QIRY IPEE+ GS VG LA DLG SV+ELPTRKLRVS+E YF
Sbjct: 14 VLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAED-YF 72
Query: 76 TVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKFTQ 135
VS ESG+LLV+ R+DRE+ICG+K CALEFE VAENP+N +HV V I+DIND+ P+F
Sbjct: 73 NVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFVA 132
Query: 136 NSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSLINKEKSDGSKYPEMV 195
+L+I ESA PG +F L SA DAD+ N+L+ Y ++P+ +FSL KE DGSKYP ++
Sbjct: 133 KGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVLL 192
Query: 196 LKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAPVFSQDVYRVSLSENV 255
L+ PLDRE Q S+ L LTA+D G PPLS T I + VTDANDNAPVFSQ+VYRVSL ENV
Sbjct: 193 LEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQENV 252
Query: 256 YPGTTVLQVTATDQDEGVNAEITFSFSEASQITQ-FDLNSNTGEITVLNTLDFEEVKEYS 314
GT+VL+V ATDQDEG+NAEIT++F + T F+LN NTG+IT TLDFEE Y
Sbjct: 253 PWGTSVLRVMATDQDEGINAEITYAFLNSPISTSLFNLNPNTGDITTNGTLDFEETSRYV 312
Query: 315 IVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDAELGTHIALLKVRDKDS 374
+ +EA+DGG A C V++E++DENDNAPEV F S N I ED++LGT IAL+KVRDKDS
Sbjct: 313 LSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDKDS 372
Query: 375 RHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNITVTATDRGKPPLSSSS 434
NG VTC + +VPFK+ ++S+N YKLV L+REQ +YN+T+ ATD+GKP LSS +
Sbjct: 373 GQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSSRT 432
Query: 435 SITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPDLGPNGQVSYCIMASDL 494
SITLHI D+NDNAPVF Q+SY+VHV+ENNPPGASI+QV ASDPDLGPNG+VSY I+ASDL
Sbjct: 433 SITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILASDL 492
Query: 495 EQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVDDRN 554
E REL SYVS+S +SGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLV D N
Sbjct: 493 EPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLN 552
Query: 555 DNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGL 614
DNAPRVLYPALGPDGSALFDMVP AAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGL
Sbjct: 553 DNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGL 612
Query: 615 FSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDIT 674
FSLGLRTGEVRTARALGDRDA RQRLLVAVRDGGQPPLSATATLHL+FADSLQEVLPD++
Sbjct: 613 FSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDLS 672
Query: 675 DRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSSPASWSCFQPGLCVKSE 734
DRP+PSD Q ELQFYLVVALALISVLFL+A+ILAIALRLRRSSS + CFQ GLC KS
Sbjct: 673 DRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCSKSG 732
Query: 735 SVVPPNYSEGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDILCGDSSGALFPLCNSS 793
VPPN+SEGTLPYSYNLC+A H+ KTEFN L + +++ QD+LC D S +C S+
Sbjct: 733 PGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDDPS---MVVCASN 789
Query: 794 E---------LTSHQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMIL 844
E L+SH QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMIL
Sbjct: 790 EDHKIAYDPSLSSH-QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMIL 848
Query: 845 ASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDG 904
ASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDG
Sbjct: 849 ASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDG 908
Query: 905 KAPAGGNGNKKKSGKKEKK 923
KAPAGGNGNKKKSGKKEKK
Sbjct: 909 KAPAGGNGNKKKSGKKEKK 927
>gi|14270505 protocadherin gamma subfamily B, 5 isoform 2 precursor
[Homo sapiens]
Length = 818
Score = 1317 bits (3408), Expect = 0.0
Identities = 668/800 (83%), Positives = 721/800 (90%), Gaps = 2/800 (0%)
Query: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE
Sbjct: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
Query: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN
Sbjct: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
Query: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSL 180
VEIEDINDHTPKFTQNSFELQISESAQPGTRFIL A DADIG N+LQ Y+LS + FSL
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
Query: 181 INKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAP 240
I KEK DGSKYPE+ L+ LDRE+Q + L LTALD G PPLS T ++ + VTDANDN P
Sbjct: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
Query: 241 VFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSFSEASQITQFDLNSNTGEIT 300
VF++DVYRVSL ENV PGTTVLQV+ATDQDEG+N+EIT+SF QI F LNS +GEIT
Sbjct: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQI--FSLNSKSGEIT 298
Query: 301 VLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDAEL 360
LDFEE KEYS+V+E RDGGG++AQCTVE+ + DENDN+PEV F SL +I+E+A
Sbjct: 299 TQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVP 358
Query: 361 GTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNITV 420
GT IAL+K+ D+DS NGEV C+L+G+VPFKI++SS+N+YKLVTD LDREQ PEYN+T+
Sbjct: 359 GTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTI 418
Query: 421 TATDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPDLG 480
TATDRGKPPLSSS S+ LHI DVNDNAPVF Q+SY+V V ENNPPGASI+QV ASD DLG
Sbjct: 419 TATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLG 478
Query: 481 PNGQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSPAL 540
NGQVSY IMASDLE L+SYVS+SA+SGVVFAQRAFD+EQLR FELTLQARDQGSPAL
Sbjct: 479 LNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPAL 538
Query: 541 SANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGHNA 600
SANVSLRVLV DRNDNAPRVLYPALGPDGSALFDMVP AAEPGYLVTKVVAVDADSGHNA
Sbjct: 539 SANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNA 598
Query: 601 WLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATLHL 660
WLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDA RQRLLVAVRDGGQPPLSATATLHL
Sbjct: 599 WLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHL 658
Query: 661 VFADSLQEVLPDITDRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSSPA 720
VFADSLQEVLPDITDRP PSD QAELQFYLVVALALISVLFL+A+ILA+ALRLRRSSSPA
Sbjct: 659 VFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSSPA 718
Query: 721 SWSCFQPGLCVKSESVVPPNYSEGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCG 780
+WSCFQPGLCVKS VVPPNYS+GTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCG
Sbjct: 719 AWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCG 778
Query: 781 DSSGALFPLCNSSELTSHQQ 800
DSSGALFPLCNSSE TSH +
Sbjct: 779 DSSGALFPLCNSSESTSHPE 798
>gi|11128035 protocadherin gamma subfamily B, 2 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 1293 bits (3345), Expect = 0.0
Identities = 662/934 (70%), Positives = 761/934 (81%), Gaps = 14/934 (1%)
Query: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
M + +G G L VL FLLSLF AL QIRY IPEE+ K SVVGNLA DLG SV++
Sbjct: 1 MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60
Query: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
LP RKLRVS+EK YFTV+ ESG+LLVS R+DRE+ICGK+P C L+F+ VAENPLN +++
Sbjct: 61 LPARKLRVSAEKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA 120
Query: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSL 180
V ++DIND+TP F Q L+I ES +PGT F L A D+D+G N+LQ Y L+ +++F L
Sbjct: 121 VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL 180
Query: 181 INKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAP 240
K+ DG KYPE++LK LDRE+ + L LTA+D G PP S T QI + VTDANDN P
Sbjct: 181 AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP 240
Query: 241 VFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSFSEASQITQ--FDLNSNTGE 298
VFSQDVYRV+L E+V PG VLQVTATD+DEG+NAEIT+SF + + F+LN TGE
Sbjct: 241 VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE 300
Query: 299 ITVLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDA 358
IT + LDFE Y++ +EA+D G + A C+++VE++D+ND APEVI S+ + ED+
Sbjct: 301 ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS 360
Query: 359 ELGTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNI 418
GT IAL+K RD+DS NGEV C++ G+ F + +SS+N YKLVTD LDRE+ PEYN+
Sbjct: 361 PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL 420
Query: 419 TVTATDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPD 478
T+TATD GKPPLSSS +TLHI DVNDNAPVF Q+SY+VHVAENNPPGASI+Q+ ASDPD
Sbjct: 421 TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD 480
Query: 479 LGPNGQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSP 538
LGP+GQVSY I+ASDL+ RE+ SYVS+SA+SGVVFAQRAFDHEQLRAFELTLQARDQGSP
Sbjct: 481 LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
Query: 539 ALSANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGH 598
ALSANVSLRVLV D NDNAPRVLYPALGPDGSALFDMVP AAEPGYLVTKVVAVDADSGH
Sbjct: 541 ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 600
Query: 599 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATL 658
NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDA RQRLLVAVRDGGQPPLSATATL
Sbjct: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
Query: 659 HLVFADSLQEVLPDITDRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSS 718
HL+FADSLQEVLPD++DR +PSD QA+LQFYLVVALALISVLF +A+ILAI+LRLR SS
Sbjct: 661 HLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSR 720
Query: 719 PASWSCFQPGLCVKSESVVPPNYSEGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDI 777
+W CFQPGL K V PNYSEGTLPYSYNLCVA + KTEFNFL + +L QD+
Sbjct: 721 SDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDL 780
Query: 778 LCGDSS--------GALFPLCNSSELTSHQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTW 829
+C ++S A P + + L +QAPPNTDWRFSQAQRPGTSGSQNGDDTGTW
Sbjct: 781 VCDNASWEQNTNHGAAGVPFASDTIL---KQAPPNTDWRFSQAQRPGTSGSQNGDDTGTW 837
Query: 830 PNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIP 889
PNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIP
Sbjct: 838 PNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIP 897
Query: 890 GSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 923
GSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 898 GSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
>gi|11128033 protocadherin gamma subfamily B, 3 isoform 1 precursor
[Homo sapiens]
Length = 929
Score = 1285 bits (3326), Expect = 0.0
Identities = 658/931 (70%), Positives = 755/931 (81%), Gaps = 10/931 (1%)
Query: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
MG+ +G G A + +LFLFLLSL L E IRY IPEE+ +GS+VGNLA DLGF V +
Sbjct: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
Query: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
LPTR LRV +EK +FTVS E+G LLVS R+DREEICGKK C LEFE VAE PLNF+HV
Sbjct: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
Query: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSL 180
V I+DIND+ P F+QN EL+ISE A G F L SA D D+G N+LQ Y LSP HFSL
Sbjct: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
Query: 181 INKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAP 240
I KE DGS+YPE+VLK PLDRE+Q +HL LTA+D G P S T QI V+V DANDN P
Sbjct: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
Query: 241 VFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSFSEASQITQ--FDLNSNTGE 298
VF+QD+YRV+++EN+ G++VL+V A D DEG+NAEI ++F + + F L+S TGE
Sbjct: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
Query: 299 ITVLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDA 358
+T + LDFEE Y+I +EA+DGG A C V++++ DENDNAPE+ S I EDA
Sbjct: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
Query: 359 ELGTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNI 418
ELGT +AL+K D DS NGE+ C+L+G+ PFKI+ ++NTY+LVTD LDREQ PEYN+
Sbjct: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
Query: 419 TVTATDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPD 478
T+TATD+G PPLSSS +ITLHI DVNDN PVF Q+SY VHVAENNPPGASI+ VRASDPD
Sbjct: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
Query: 479 LGPNGQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSP 538
LGPNG VSY I+ASDLE RELSSYVS+SA SGVVFAQRAFDHEQLRAFELTLQARDQGSP
Sbjct: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
Query: 539 ALSANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGH 598
LSANVSLRVLVDDRNDNAP VLYPALGP+GSALFDMVP +AEPGYLVTKVVAVDADSG+
Sbjct: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
Query: 599 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATL 658
NAWLSYH++QASEPGLFSLGLRTGEVRTAR LGDR+A RQRLLV VRDGGQ PLSAT L
Sbjct: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
Query: 659 HLVFADSLQEVLPDITDRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSS 718
HL+FADSLQE+ PD++DRP PSD QAELQF+LVVALALISVLFL+A+ILAI+LRLR SS
Sbjct: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
Query: 719 PASWSCFQPGLCVKSESVVPPNYSEGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDI 777
PA+ FQPG+C K+ V P YSE TLPYSYN C A H+ TEF FL + ++ QD+
Sbjct: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
Query: 778 LCGDSSGALFPLCNSSELTSH-----QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN 832
LC ++S F ++ E+ S+ +QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN
Sbjct: 781 LCDEAS--WFESNDNPEMPSNSGNLQKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN 838
Query: 833 QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN 892
QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN
Sbjct: 839 QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN 898
Query: 893 ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 923
ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 899 ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
>gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precursor
[Homo sapiens]
Length = 929
Score = 1281 bits (3315), Expect = 0.0
Identities = 660/929 (71%), Positives = 743/929 (79%), Gaps = 6/929 (0%)
Query: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
MG + RA VLF LL LF P LCE IRY IPEE+ KGSVVGNLA DLG SV +
Sbjct: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
Query: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
+ R+LRVS+EK +F+V A+SG+LLV R+DRE+IC ++ C L+ EAV ENPLN +HV
Sbjct: 61 VSARELRVSAEKLHFSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
Query: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSL 180
V IED+NDH P+F ++ L+ISES G IL SA D DI N+L YQLSP+++FSL
Sbjct: 121 VVIEDVNDHAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSL 180
Query: 181 INKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAP 240
+ K+ DG KYPE+VL+ LDRE Q ++HL LTALD G PP S TAQI +LV DANDN P
Sbjct: 181 VEKDNPDGGKYPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPP 240
Query: 241 VFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSFSEASQITQ--FDLNSNTGE 298
VFSQDVYRVSL E+V PGT++L+V ATDQDEG+N+EIT+SF + Q F L+ TG
Sbjct: 241 VFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGN 300
Query: 299 ITVLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDA 358
I LDFEEV+ Y+I +EA+D G + +C V VEV+DENDN+PE+I SL + IMED+
Sbjct: 301 ILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDS 360
Query: 359 ELGTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNI 418
G +AL K RD+DS NGEV C L VPFKI +SS N YKLVTD LDREQ PEYN+
Sbjct: 361 PPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNV 420
Query: 419 TVTATDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPD 478
T+ ATDRGKPPLSSS +ITLHI DVNDNAPVF QS+Y+VHV ENN PGASI+QV ASDPD
Sbjct: 421 TIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPD 480
Query: 479 LGPNGQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSP 538
G NG+VSY ++ASDLE R LSSYVS+SA+SGVVFAQRAFDHEQLR FELTLQARDQGSP
Sbjct: 481 FGLNGRVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSP 540
Query: 539 ALSANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGH 598
ALSANVSLRVLV DRNDNAPRVLYPALGPDGSALFD VP AA+PGYLVTKVVAVDADSGH
Sbjct: 541 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGH 600
Query: 599 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATL 658
NAWLSYHV+QASEPGLFSLGLRTGEVR RALGD+D+VRQRLLVAVRDGGQPPLSATATL
Sbjct: 601 NAWLSYHVVQASEPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATL 660
Query: 659 HLVFADSLQEVLPDITDRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSS 718
HLVFADSLQEVLPD +D P PSD QAE+QFYLVVALALISVLFL+A+ILAIALRLR+S S
Sbjct: 661 HLVFADSLQEVLPDFSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFS 720
Query: 719 PASWSCFQPGLCVKSESVVPPNYSEGTLPYSYNLCV-AHTGKTEFNFLKCSEQLSSGQDI 777
P + CF+ LC KS V PPNYSEGTLPY+YN CV EFNF + + QD
Sbjct: 721 PTAGDCFESVLCSKSGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHCPATQDN 780
Query: 778 LCGDS---SGALFPLCNSSELTSHQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 834
L DS + L P + + QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF
Sbjct: 781 LNKDSMLLASILTPSVEADKKILKQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 840
Query: 835 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 894
DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT
Sbjct: 841 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 900
Query: 895 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 923
LTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 901 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
>gi|14270502 protocadherin gamma subfamily B, 6 isoform 2 precursor
[Homo sapiens]
Length = 820
Score = 1074 bits (2778), Expect = 0.0
Identities = 546/811 (67%), Positives = 641/811 (79%), Gaps = 2/811 (0%)
Query: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
MG + RA VLF LL LF P L E IRY IPEE+ KGSVVGNLA DLG SV +
Sbjct: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
Query: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
+ RKLRVS+EK +F+V AESG+LLV +R+DRE+IC ++ C L+ EAV ENPLN +HV
Sbjct: 61 VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
Query: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSL 180
V IED+NDH P+F + L+I ESA GTR L A D DI N++++Y+++ + +FSL
Sbjct: 121 VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL 180
Query: 181 INKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAP 240
+ + SDG KYPE+ L+ LDRE+Q+S+ L LTALD G PP S+TA I + V D NDN P
Sbjct: 181 MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP 240
Query: 241 VFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSFSEASQITQ--FDLNSNTGE 298
VFS+D YR+SLSEN+ PG+ VLQVTATDQDEGVNAEI + F +Q T+ F L+ TG
Sbjct: 241 VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM 300
Query: 299 ITVLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDA 358
I + DFE+V+ Y++ +EA+DGGG+ QC V +E++DENDN+PE+I SL + I+E++
Sbjct: 301 IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS 360
Query: 359 ELGTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNI 418
G +AL K RD D NGEV C +E D+PFKI +SS N YKLVTD LDREQ PEYN+
Sbjct: 361 PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV 420
Query: 419 TVTATDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPD 478
T+ ATDRGKPPLSSS SITL++ D+NDNAPVF Q+SY+VHVAENNPPGASI+QV ASDPD
Sbjct: 421 TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD 480
Query: 479 LGPNGQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSP 538
LG NG +SY I+ASDLE +SSYVS+SA+SGVVFAQRAFDHEQLRAF LTLQARD GSP
Sbjct: 481 LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP 540
Query: 539 ALSANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGH 598
LSANVSLRVLV DRNDNAPRVLYPALGPDGSA FDMVP +AEPGYLVTKVVAVDADSGH
Sbjct: 541 TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH 600
Query: 599 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATL 658
NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDA RQRLLVAVRDGGQPPLSATATL
Sbjct: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
Query: 659 HLVFADSLQEVLPDITDRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSS 718
HLVFAD+LQE+LPD++DRP SD QAELQFYLVVALALISVLFL+A+ILAIALRLRRS S
Sbjct: 661 HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS 720
Query: 719 PASWSCFQPGLCVKSESVVPPNYSEGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDIL 778
PA+W CF PGLCVKS VVPPNYSEGTLPYSYNLC+AHTG EFNFLKCS L S +D++
Sbjct: 721 PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCIAHTGTKEFNFLKCSVPLHSNEDMV 780
Query: 779 CGDSSGALFPLCNSSELTSHQQAPPNTDWRF 809
C S GAL P +LTSH + + + F
Sbjct: 781 CSVSPGALIPPHGGEDLTSHPETLTSVSFSF 811
>gi|14270490 protocadherin gamma subfamily B, 1 isoform 2 precursor
[Homo sapiens]
Length = 810
Score = 1072 bits (2771), Expect = 0.0
Identities = 551/781 (70%), Positives = 639/781 (81%), Gaps = 6/781 (0%)
Query: 16 VLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSEKPYF 75
VLF FLLSLFC A+ +QIRY IPEE+ GS VG LA DLG SV+ELPTRKLRVS+E YF
Sbjct: 14 VLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAED-YF 72
Query: 76 TVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKFTQ 135
VS ESG+LLV+ R+DRE+ICG+K CALEFE VAENP+N +HV V I+DIND+ P+F
Sbjct: 73 NVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFVA 132
Query: 136 NSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSLINKEKSDGSKYPEMV 195
+L+I ESA PG +F L SA DAD+ N+L+ Y ++P+ +FSL KE DGSKYP ++
Sbjct: 133 KGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVLL 192
Query: 196 LKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAPVFSQDVYRVSLSENV 255
L+ PLDRE Q S+ L LTA+D G PPLS T I + VTDANDNAPVFSQ+VYRVSL ENV
Sbjct: 193 LEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQENV 252
Query: 256 YPGTTVLQVTATDQDEGVNAEITFSFSEASQITQ-FDLNSNTGEITVLNTLDFEEVKEYS 314
GT+VL+V ATDQDEG+NAEIT++F + T F+LN NTG+IT TLDFEE Y
Sbjct: 253 PWGTSVLRVMATDQDEGINAEITYAFLNSPISTSLFNLNPNTGDITTNGTLDFEETSRYV 312
Query: 315 IVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDAELGTHIALLKVRDKDS 374
+ +EA+DGG A C V++E++DENDNAPEV F S N I ED++LGT IAL+KVRDKDS
Sbjct: 313 LSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDKDS 372
Query: 375 RHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNITVTATDRGKPPLSSSS 434
NG VTC + +VPFK+ ++S+N YKLV L+REQ +YN+T+ ATD+GKP LSS +
Sbjct: 373 GQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSSRT 432
Query: 435 SITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPDLGPNGQVSYCIMASDL 494
SITLHI D+NDNAPVF Q+SY+VHV+ENNPPGASI+QV ASDPDLGPNG+VSY I+ASDL
Sbjct: 433 SITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILASDL 492
Query: 495 EQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVDDRN 554
E REL SYVS+S +SGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLV D N
Sbjct: 493 EPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLN 552
Query: 555 DNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGL 614
DNAPRVLYPALGPDGSALFDMVP AAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGL
Sbjct: 553 DNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGL 612
Query: 615 FSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDIT 674
FSLGLRTGEVRTARALGDRDA RQRLLVAVRDGGQPPLSATATLHL+FADSLQEVLPD++
Sbjct: 613 FSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDLS 672
Query: 675 DRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSSPASWSCFQPGLCVKSE 734
DRP+PSD Q ELQFYLVVALALISVLFL+A+ILAIALRLRRSSS + CFQ GLC KS
Sbjct: 673 DRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCSKSG 732
Query: 735 SVVPPNYSEGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDILCGDSSGALFPLCNSS 793
VPPN+SEGTLPYSYNLC+A H+ KTEFN L + +++ QD+LC D S +C S+
Sbjct: 733 PGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDDPS---MVVCASN 789
Query: 794 E 794
E
Sbjct: 790 E 790
>gi|14270493 protocadherin gamma subfamily B, 2 isoform 2 precursor
[Homo sapiens]
Length = 811
Score = 1047 bits (2708), Expect = 0.0
Identities = 535/786 (68%), Positives = 631/786 (80%), Gaps = 3/786 (0%)
Query: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
M + +G G L VL FLLSLF AL QIRY IPEE+ K SVVGNLA DLG SV++
Sbjct: 1 MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60
Query: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
LP RKLRVS+EK YFTV+ ESG+LLVS R+DRE+ICGK+P C L+F+ VAENPLN +++
Sbjct: 61 LPARKLRVSAEKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA 120
Query: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSL 180
V ++DIND+TP F Q L+I ES +PGT F L A D+D+G N+LQ Y L+ +++F L
Sbjct: 121 VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL 180
Query: 181 INKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAP 240
K+ DG KYPE++LK LDRE+ + L LTA+D G PP S T QI + VTDANDN P
Sbjct: 181 AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP 240
Query: 241 VFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSFSEASQITQ--FDLNSNTGE 298
VFSQDVYRV+L E+V PG VLQVTATD+DEG+NAEIT+SF + + F+LN TGE
Sbjct: 241 VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE 300
Query: 299 ITVLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDA 358
IT + LDFE Y++ +EA+D G + A C+++VE++D+ND APEVI S+ + ED+
Sbjct: 301 ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS 360
Query: 359 ELGTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNI 418
GT IAL+K RD+DS NGEV C++ G+ F + +SS+N YKLVTD LDRE+ PEYN+
Sbjct: 361 PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL 420
Query: 419 TVTATDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPD 478
T+TATD GKPPLSSS +TLHI DVNDNAPVF Q+SY+VHVAENNPPGASI+Q+ ASDPD
Sbjct: 421 TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD 480
Query: 479 LGPNGQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSP 538
LGP+GQVSY I+ASDL+ RE+ SYVS+SA+SGVVFAQRAFDHEQLRAFELTLQARDQGSP
Sbjct: 481 LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
Query: 539 ALSANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGH 598
ALSANVSLRVLV D NDNAPRVLYPALGPDGSALFDMVP AAEPGYLVTKVVAVDADSGH
Sbjct: 541 ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 600
Query: 599 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATL 658
NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDA RQRLLVAVRDGGQPPLSATATL
Sbjct: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
Query: 659 HLVFADSLQEVLPDITDRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSS 718
HL+FADSLQEVLPD++DR +PSD QA+LQFYLVVALALISVLF +A+ILAI+LRLR SS
Sbjct: 661 HLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSR 720
Query: 719 PASWSCFQPGLCVKSESVVPPNYSEGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDI 777
+W CFQPGL K V PNYSEGTLPYSYNLCVA + KTEFNFL + +L QD+
Sbjct: 721 SDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDL 780
Query: 778 LCGDSS 783
+C ++S
Sbjct: 781 VCDNAS 786
>gi|14270496 protocadherin gamma subfamily B, 3 isoform 2 precursor
[Homo sapiens]
Length = 814
Score = 1038 bits (2684), Expect = 0.0
Identities = 531/786 (67%), Positives = 623/786 (79%), Gaps = 3/786 (0%)
Query: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
MG+ +G G A + +LFLFLLSL L E IRY IPEE+ +GS+VGNLA DLGF V +
Sbjct: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
Query: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
LPTR LRV +EK +FTVS E+G LLVS R+DREEICGKK C LEFE VAE PLNF+HV
Sbjct: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
Query: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSL 180
V I+DIND+ P F+QN EL+ISE A G F L SA D D+G N+LQ Y LSP HFSL
Sbjct: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
Query: 181 INKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAP 240
I KE DGS+YPE+VLK PLDRE+Q +HL LTA+D G P S T QI V+V DANDN P
Sbjct: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
Query: 241 VFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSFSEASQITQ--FDLNSNTGE 298
VF+QD+YRV+++EN+ G++VL+V A D DEG+NAEI ++F + + F L+S TGE
Sbjct: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
Query: 299 ITVLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDA 358
+T + LDFEE Y+I +EA+DGG A C V++++ DENDNAPE+ S I EDA
Sbjct: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
Query: 359 ELGTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNI 418
ELGT +AL+K D DS NGE+ C+L+G+ PFKI+ ++NTY+LVTD LDREQ PEYN+
Sbjct: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
Query: 419 TVTATDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPD 478
T+TATD+G PPLSSS +ITLHI DVNDN PVF Q+SY VHVAENNPPGASI+ VRASDPD
Sbjct: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
Query: 479 LGPNGQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSP 538
LGPNG VSY I+ASDLE RELSSYVS+SA SGVVFAQRAFDHEQLRAFELTLQARDQGSP
Sbjct: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
Query: 539 ALSANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGH 598
LSANVSLRVLVDDRNDNAP VLYPALGP+GSALFDMVP +AEPGYLVTKVVAVDADSG+
Sbjct: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
Query: 599 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATL 658
NAWLSYH++QASEPGLFSLGLRTGEVRTAR LGDR+A RQRLLV VRDGGQ PLSAT L
Sbjct: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
Query: 659 HLVFADSLQEVLPDITDRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSS 718
HL+FADSLQE+ PD++DRP PSD QAELQF+LVVALALISVLFL+A+ILAI+LRLR SS
Sbjct: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
Query: 719 PASWSCFQPGLCVKSESVVPPNYSEGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDI 777
PA+ FQPG+C K+ V P YSE TLPYSYN C A H+ TEF FL + ++ QD+
Sbjct: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
Query: 778 LCGDSS 783
LC ++S
Sbjct: 781 LCDEAS 786
>gi|14270508 protocadherin gamma subfamily B, 7 isoform 2 precursor
[Homo sapiens]
Length = 808
Score = 1030 bits (2662), Expect = 0.0
Identities = 533/785 (67%), Positives = 613/785 (78%), Gaps = 3/785 (0%)
Query: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
MG + RA VLF LL LF P LCE IRY IPEE+ KGSVVGNLA DLG SV +
Sbjct: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
Query: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
+ R+LRVS+EK +F+V A+SG+LLV R+DRE+IC ++ C L+ EAV ENPLN +HV
Sbjct: 61 VSARELRVSAEKLHFSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
Query: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSL 180
V IED+NDH P+F ++ L+ISES G IL SA D DI N+L YQLSP+++FSL
Sbjct: 121 VVIEDVNDHAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSL 180
Query: 181 INKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAP 240
+ K+ DG KYPE+VL+ LDRE Q ++HL LTALD G PP S TAQI +LV DANDN P
Sbjct: 181 VEKDNPDGGKYPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPP 240
Query: 241 VFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSFSEASQITQ--FDLNSNTGE 298
VFSQDVYRVSL E+V PGT++L+V ATDQDEG+N+EIT+SF + Q F L+ TG
Sbjct: 241 VFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGN 300
Query: 299 ITVLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDA 358
I LDFEEV+ Y+I +EA+D G + +C V VEV+DENDN+PE+I SL + IMED+
Sbjct: 301 ILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDS 360
Query: 359 ELGTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNI 418
G +AL K RD+DS NGEV C L VPFKI +SS N YKLVTD LDREQ PEYN+
Sbjct: 361 PPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNV 420
Query: 419 TVTATDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPD 478
T+ ATDRGKPPLSSS +ITLHI DVNDNAPVF QS+Y+VHV ENN PGASI+QV ASDPD
Sbjct: 421 TIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPD 480
Query: 479 LGPNGQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSP 538
G NG+VSY ++ASDLE R LSSYVS+SA+SGVVFAQRAFDHEQLR FELTLQARDQGSP
Sbjct: 481 FGLNGRVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSP 540
Query: 539 ALSANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGH 598
ALSANVSLRVLV DRNDNAPRVLYPALGPDGSALFD VP AA+PGYLVTKVVAVDADSGH
Sbjct: 541 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGH 600
Query: 599 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATL 658
NAWLSYHV+QASEPGLFSLGLRTGEVR RALGD+D+VRQRLLVAVRDGGQPPLSATATL
Sbjct: 601 NAWLSYHVVQASEPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATL 660
Query: 659 HLVFADSLQEVLPDITDRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSS 718
HLVFADSLQEVLPD +D P PSD QAE+QFYLVVALALISVLFL+A+ILAIALRLR+S S
Sbjct: 661 HLVFADSLQEVLPDFSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFS 720
Query: 719 PASWSCFQPGLCVKSESVVPPNYSEGTLPYSYNLCV-AHTGKTEFNFLKCSEQLSSGQDI 777
P + CF+ LC KS V PPNYSEGTLPY+YN CV EFNF + + QD
Sbjct: 721 PTAGDCFESVLCSKSGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHCPATQDN 780
Query: 778 LCGDS 782
L DS
Sbjct: 781 LNKDS 785
>gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 929 bits (2402), Expect = 0.0
Identities = 504/946 (53%), Positives = 641/946 (67%), Gaps = 65/946 (6%)
Query: 16 VLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRV--SSEKP 73
VL LL C QIRY +PEE+ KGS VG+++ DLG +EL R +R+
Sbjct: 14 VLLGILLGTLWETGCTQIRYSVPEELEKGSRVGDISRDLGLEPRELAERGVRIIPRGRTQ 73
Query: 74 YFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKF 133
F ++ SG L+ + R+DREE+C C L + + E+ + Y V VE+ DIND+ P F
Sbjct: 74 LFALNPRSGSLVTAGRIDREELCMGAIKCQLNLDILMEDKVKIYGVEVEVRDINDNAPYF 133
Query: 134 TQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSLINKEKSDGSKYPE 193
++ E++ISE+A RF L A D DIG N+LQ+Y+LSP+ HFSLI + +DGSKYPE
Sbjct: 134 RESELEIKISENAATEMRFPLPHAWDPDIGKNSLQSYELSPNTHFSLIVQNGADGSKYPE 193
Query: 194 MVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAPVFSQDVYRVSLSE 253
+VLK LDRE++ ++HL LTA D G P + TA+I V+V DANDNAP F+Q YR S+ E
Sbjct: 194 LVLKRALDREEKAAHHLVLTASDGGDPVRTGTARIRVMVLDANDNAPAFAQPEYRASVPE 253
Query: 254 NVYPGTTVLQVTATDQDEGVNAEITFSF----SEASQITQFDLNSNTGEITVLNTLDFEE 309
N+ GT +L V ATD DEGVNAE+ +SF +A+Q+ F L+ N+G I+ + LD EE
Sbjct: 254 NLALGTQLLVVNATDPDEGVNAEVRYSFRYVDDKAAQV--FKLDCNSGTISTIGELDHEE 311
Query: 310 VKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDAELGTHIALLKV 369
Y + ++A D G A+ V + V+D NDNAPEV+ SL + + E++ GT IALL V
Sbjct: 312 SGFYQMEVQAMDNAGYSARAKVLITVLDVNDNAPEVVLTSLASSVPENSPRGTLIALLNV 371
Query: 370 RDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNITVTATDRGKPP 429
D+DS NG+V C ++G++PFK+ S N Y LVTD VLDREQ P YNITVTATDRG PP
Sbjct: 372 NDQDSEENGQVICFIQGNLPFKLEKSYGNYYSLVTDIVLDREQVPSYNITVTATDRGTPP 431
Query: 430 LSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPDLGPNGQVSYCI 489
LS+ + I+L++ D NDN PVF Q+SY ++ ENNP G S+ V A DPD N Q++Y +
Sbjct: 432 LSTETHISLNVADTNDNPPVFPQASYSAYIPENNPRGVSLVSVTAHDPDCEENAQITYSL 491
Query: 490 MASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVL 549
+ ++ LSSYVSI++++GV++A +FD+EQ R ++ + ARD G P LS+NVSL +
Sbjct: 492 AENTIQGASLSSYVSINSDTGVLYALSSFDYEQFRDLQVKVMARDNGHPPLSSNVSLSLF 551
Query: 550 VDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGHNAWLSYHVLQA 609
V D+NDNAP +LYPAL DGS ++ P +AEPGYLVTKVVAVD DSG NAWLSY +L+A
Sbjct: 552 VLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKA 611
Query: 610 SEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEV 669
SEPGLFS+GL TGEVRTARAL DRDA++Q L+VAV+D GQPPLSAT TL + ADS+ +V
Sbjct: 612 SEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPQV 671
Query: 670 LPDITDRPDPSDLQ-AELQFYLVVALALISVLFLVAMILAIALRLRR------------- 715
L D+ P++ + ++L YLVVA+A +S +FL +IL +ALRLRR
Sbjct: 672 LADLGSLESPANSETSDLTLYLVVAVAAVSCVFLAFVILLLALRLRRWHKSRLLQASGGG 731
Query: 716 -SSSPASWSCFQPGLCV----------------KSESVVP-PNYSEGTLPYSYNLCVAHT 757
+ +PAS G+ KS + P PNY++ +
Sbjct: 732 LTGAPASHFVGVDGVQAFLQTYSHEVSLTTDSRKSHLIFPQPNYADMLV----------- 780
Query: 758 GKTEFNFLKCSEQLSSGQDILCGDSSGALFPLCNSSELTSHQQAPPNTDWRFSQAQRPGT 817
++ +F K L SG + DS G + +QAPPNTDWRFSQAQRPGT
Sbjct: 781 --SQESFEKSEPLLLSGDSVFSKDSHGLI------------EQAPPNTDWRFSQAQRPGT 826
Query: 818 SGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQ 877
SGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQ
Sbjct: 827 SGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQ 886
Query: 878 HVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 923
HVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 887 HVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precursor
[Homo sapiens]
Length = 935
Score = 921 bits (2381), Expect = 0.0
Identities = 499/933 (53%), Positives = 637/933 (68%), Gaps = 23/933 (2%)
Query: 9 GRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRV 68
G RL +L L QIRY +PEE KGS VGN++ DLG +EL R +R+
Sbjct: 8 GDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRI 67
Query: 69 SS--EKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDI 126
S + F V+ SG L+ + R+DREE+C +C L E + E+ L Y V VEI DI
Sbjct: 68 VSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIIDI 127
Query: 127 NDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSLINKEKS 186
ND+ P F ++ E+++SE A PG RF L +A D D+G N+LQ+YQLSP+++FSL + ++
Sbjct: 128 NDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRT 187
Query: 187 DGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAPVFSQDV 246
DG+K PE+VL+ LDREK+ ++ L LTALD G P I V+V D ND+ P+F+Q V
Sbjct: 188 DGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSV 247
Query: 247 YRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSF----SEASQITQFDLNSNTGEITVL 302
YRVS+ EN+ GT VL V ATD DEG+N E+ +SF S+AS+I F L+S TGE+ V
Sbjct: 248 YRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEI--FQLDSQTGEVQVR 305
Query: 303 NTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDAELGT 362
+LDFE+ + Y + ++ +DGGG+ T+ + V+D NDNAPE+ S N I+E++ GT
Sbjct: 306 GSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGT 365
Query: 363 HIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNITVTA 422
IALL V+D+DS NG+V+C + +PFK+ + N YKL+T VLDRE YNIT+TA
Sbjct: 366 VIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTA 425
Query: 423 TDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPDLGPN 482
TD+G PPLS+ + + L++ D NDN PVF SSY ++ ENNP GASI V A DPD N
Sbjct: 426 TDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQN 485
Query: 483 GQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSPALSA 542
V+Y + ++ LSSYVSI++ +GV++A ++FD+EQ R EL + ARD G P LS+
Sbjct: 486 ALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSS 545
Query: 543 NVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGHNAWL 602
NVSL + V D+NDNAP +LYPAL DGS ++ P +AEPGYLVTKVVAVD DSG NAWL
Sbjct: 546 NVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWL 605
Query: 603 SYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATLHLVF 662
SY +L+ASEPGLF++G TGEVRTARAL DRDA++Q L+VAV+D GQPPLSAT TL +
Sbjct: 606 SYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAV 665
Query: 663 ADSLQEVLPDITDRPDPSDLQ-AELQFYLVVALALISVLFLVAMILAIALRLRRSSSPAS 721
ADS+ EVL D+ ++ + ++L YLVVA+A +S +FLV +I+ +ALRL R
Sbjct: 666 ADSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRWHKSRL 725
Query: 722 WSCFQPGLC--VKSESVVPPNYSEGTLPYSYNL-CVAHTGKTEFNF--------LKCSEQ 770
+ GL S V YS+ + +A + K+ F L E
Sbjct: 726 LQASEGGLAGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTLISQES 785
Query: 771 LSSGQDILCGDSSGALFPLCNSSELTSHQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP 830
+ +L + S + C+ TS+QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP
Sbjct: 786 CEKSEPLLIAEDSAIILGKCDP---TSNQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP 842
Query: 831 NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG 890
NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG
Sbjct: 843 NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG 902
Query: 891 SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 923
SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 903 SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 935
>gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 917 bits (2370), Expect = 0.0
Identities = 507/943 (53%), Positives = 635/943 (67%), Gaps = 39/943 (4%)
Query: 2 GSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQEL 61
G G GEL +L LL C QIRY +PEE+ KGS VGN+A DLG QEL
Sbjct: 7 GWGCGEL-------LLPFMLLGTLCEPGSGQIRYSMPEELDKGSFVGNIAKDLGLEPQEL 59
Query: 62 PTRKLRVSSE--KPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHV 119
R +R+ S F ++ SG L+ + R+DREE+C + P C + F + EN + Y V
Sbjct: 60 AERGVRIVSRGRTQLFALNPRSGSLVTAGRIDREELCAQSPLCVVNFNILVENKMKIYGV 119
Query: 120 NVEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFS 179
VEI DIND+ P+F +++++E+A GTR +L A DAD+G N+L++YQLS + HFS
Sbjct: 120 EVEIIDINDNFPRFRDEELKVKVNENAAAGTRLVLPFARDADVGVNSLRSYQLSSNLHFS 179
Query: 180 LINKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNA 239
L +DG KYPE+VL+ PLDREK+ + L LTALD G P LS T I V V DANDNA
Sbjct: 180 LDVVSGTDGQKYPELVLEQPLDREKETVHDLLLTALDGGDPVLSGTTHIRVTVLDANDNA 239
Query: 240 PVFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSF-SEASQITQ-FDLNSNTG 297
P+F+ Y VS+ EN+ GT +L +TATD DEG+N ++T+SF +E +I++ F L+SN G
Sbjct: 240 PLFTPSEYSVSVPENIPVGTRLLMLTATDPDEGINGKLTYSFRNEEEKISETFQLDSNLG 299
Query: 298 EITVLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMED 357
EI+ L +LD+EE + Y + + A+DGG ++A V V V D NDNAPEVI SL + I ED
Sbjct: 300 EISTLQSLDYEESRFYLMEVVAQDGGALVASAKVVVTVQDVNDNAPEVILTSLTSSISED 359
Query: 358 AELGTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYN 417
GT IAL V D DS NGE+ C + ++PFK+ S N Y L+T LDRE+ +YN
Sbjct: 360 CLPGTVIALFSVHDGDSGENGEIACSIPRNLPFKLEKSVDNYYHLLTTRDLDREETSDYN 419
Query: 418 ITVTATDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDP 477
IT+T D G PPLS+ S I L + DVNDN P F Q+SY V ENNP G SI V A DP
Sbjct: 420 ITLTVMDHGTPPLSTESHIPLKVADVNDNPPNFPQASYSTSVTENNPRGVSIFSVTAHDP 479
Query: 478 DLGPNGQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGS 537
D G N +V+Y + + LSSYVSI++++GV++A R+FD+EQLR +L + A D G+
Sbjct: 480 DSGDNARVTYSLAEDTFQGAPLSSYVSINSDTGVLYALRSFDYEQLRDLQLWVTASDSGN 539
Query: 538 PALSANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSG 597
P LS+NVSL + V D+NDN P +LYPAL DGS ++ P +AEPGYLVTKVVAVD DSG
Sbjct: 540 PPLSSNVSLSLFVLDQNDNTPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 599
Query: 598 HNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATAT 657
NAWLSY +L+ASEPGLF++GL TGEVRTARAL DRDA++Q L+VAV D GQPPLSAT T
Sbjct: 600 QNAWLSYRLLKASEPGLFAVGLHTGEVRTARALLDRDALKQSLVVAVEDHGQPPLSATFT 659
Query: 658 LHLVFADSLQEVLPD---ITDRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLR 714
+ + AD + ++L D I DP DL +L YLVVA+A +S +FL +I+ + LRLR
Sbjct: 660 VTVAVADRIPDILADLGSIKTPIDPEDL--DLTLYLVVAVAAVSCVFLAFVIVLLVLRLR 717
Query: 715 RSSSPASWSCFQPGLCVKSESVVPPNYSEGT-------LPYSYNLCV-AHTGKTEFNFLK 766
R L + VP ++ G YS+ + + A + K+ F
Sbjct: 718 RWHKSRLLQAEGSRL-----AGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIF-- 770
Query: 767 CSEQLSSGQDILCGDSSGALFPLCNSSELTSH------QQAPPNTDWRFSQAQRPGTSGS 820
Q + +L +S PL S ++ ++ QQAPPNTDWRFSQAQRPGTSGS
Sbjct: 771 --PQPNYADTLLSEESCEKSEPLLMSDKVDANKEERRVQQAPPNTDWRFSQAQRPGTSGS 828
Query: 821 QNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVP 880
QNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVP
Sbjct: 829 QNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVP 888
Query: 881 DYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 923
DYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 889 DYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
>gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 915 bits (2365), Expect = 0.0
Identities = 501/920 (54%), Positives = 629/920 (68%), Gaps = 13/920 (1%)
Query: 16 VLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSE--KP 73
VL L LL A QIRY IPEE+ KGS VGN+ DLG QEL +R+ S
Sbjct: 14 VLLLTLLGTLWGAAAAQIRYSIPEELEKGSFVGNIVKDLGLEPQELAEHGVRIVSRGRMQ 73
Query: 74 YFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKF 133
F+++ +G L+ + R+DREE+C + P C + F + E+ LN Y V VEI DIND+TP+F
Sbjct: 74 LFSLNPRNGSLVTAGRIDREELCAQSPRCLVSFNILVEDKLNLYPVEVEIVDINDNTPRF 133
Query: 134 TQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSLINKEKSDGSKYPE 193
+ E++I E+A P +RF L +D D+G N+LQ ++LS + HFS+ + ++ G KYPE
Sbjct: 134 LKEELEVKILENAAPSSRFPLMEVYDPDVGMNSLQGFKLSGNSHFSVDVQSEAHGPKYPE 193
Query: 194 MVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAPVFSQDVYRVSLSE 253
+VL+ LDRE + Y L LTA+D G P SS AQI V V D NDN P+F+Q VYRVS+ E
Sbjct: 194 LVLEGTLDREGEAVYRLVLTAMDGGDPVRSSVAQILVTVLDVNDNTPMFTQPVYRVSVPE 253
Query: 254 NVYPGTTVLQVTATDQDEGVNAEITFSFSEASQ-ITQ-FDLNSNTGEITVLNTLDFEEVK 311
N+ GT VL VTATDQDEGV+ E+T+SF + ++ I+Q F LN TGEI+ LD+E+
Sbjct: 254 NLPVGTPVLAVTATDQDEGVHGEVTYSFVKITEKISQIFCLNVLTGEISTSANLDYEDSS 313
Query: 312 EYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDAELGTHIALLKVRD 371
Y + +EARDG G+ + V + ++D NDN PEV+ S I E A GT IAL +V D
Sbjct: 314 FYELGVEARDGPGLRDRAKVLITILDVNDNVPEVVVTSGSRTIAESAPPGTVIALFQVFD 373
Query: 372 KDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNITVTATDRGKPPLS 431
+DS NG VTC + +PF++ S N Y+LVT+A LDRE+ YNITVTATD+G PPLS
Sbjct: 374 RDSGLNGLVTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYNITVTATDKGTPPLS 433
Query: 432 SSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPDLGPNGQVSYCIMA 491
+ + I+L++ D NDN P F SSY V+V ENNP GASI V A DPD+ N QVSY +
Sbjct: 434 TETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDPDVDQNAQVSYSLAE 493
Query: 492 SDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVD 551
L+ LSSYVSI++++G+++A R+FD+EQLR +L + A D G P LS+NVSL + V
Sbjct: 494 DTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTASDSGDPPLSSNVSLSLFVL 553
Query: 552 DRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASE 611
D+NDNAP +LYPAL DGS ++ P +AEPGYLVTKVVAVD DSG NAWLSY +L+ASE
Sbjct: 554 DQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASE 613
Query: 612 PGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLP 671
PGLFS+GL TGEVRTARAL DRDA++Q L+VAV+D GQPPLSAT TL + AD + ++L
Sbjct: 614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDILA 673
Query: 672 DITD-RPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSSPASWSCFQPGLC 730
D+ P ++L YLVVA+A +S +FL +I+ +ALRL+R GL
Sbjct: 674 DLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLQRWHKSRLLQASGGGLA 733
Query: 731 VKSESVVPPNYSEGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCGDSSGALFPLC 790
S +Y+ V+ T + + L Q + ++ +S PL
Sbjct: 734 SMPGSHFVGVEGVRAFLQTYSHEVSLTADSRKSHL-IFPQPNYADTLINQESYEKSEPLL 792
Query: 791 NSSELTSH-------QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMI 843
+ +L QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMI
Sbjct: 793 ITQDLLETKGEPRQLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMI 852
Query: 844 LASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRD 903
LASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRD
Sbjct: 853 LASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRD 912
Query: 904 GKAPAGGNGNKKKSGKKEKK 923
GKAPAGGNGNKKKSGKKEKK
Sbjct: 913 GKAPAGGNGNKKKSGKKEKK 932
>gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 911 bits (2355), Expect = 0.0
Identities = 492/929 (52%), Positives = 630/929 (67%), Gaps = 31/929 (3%)
Query: 16 VLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSE--KP 73
VL LL + A QIRY +PEE KG +VGN++ DL +EL R++R+ S
Sbjct: 14 VLLCSLLGMLWEARASQIRYSVPEETEKGYIVGNISKDLALEPRELAERRVRIVSRGRTQ 73
Query: 74 YFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKF 133
F+++ SG L+ + R+DREE+C + P C + F+ + E+ + Y + +E+ DIND PKF
Sbjct: 74 LFSLNPRSGTLVTAGRIDREELCAQSPRCLVNFKVLVEDRVKLYGIEIEVTDINDSAPKF 133
Query: 134 TQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSLINKEKSDGSKYPE 193
S E++I+E A PG R+ L A D D+G N+LQ+YQLSP+ HFSL + +G+ PE
Sbjct: 134 QAESLEVKINEIAVPGARYPLPEAIDPDVGVNSLQSYQLSPNHHFSLNVQTGDNGAINPE 193
Query: 194 MVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAPVFSQDVYRVSLSE 253
+VL+ LDRE+ ++HL LTA D G P SST +IHV V D NDNAPVF+Q +YRV + E
Sbjct: 194 LVLERALDREEATAHHLVLTASDGGEPRRSSTVRIHVTVLDTNDNAPVFAQRIYRVKVLE 253
Query: 254 NVYPGTTVLQVTATDQDEGVNAEITFSFSEAS--QITQFDLNSNTGEITVLNTLDFEEVK 311
NV PGT +L TA+D DEG+N ++ + F + + Q F LN NTGEI+ +LD+EE
Sbjct: 254 NVPPGTWLLTATASDLDEGINGKVAYKFWKINEKQSLLFQLNENTGEISTAKSLDYEECS 313
Query: 312 EYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDAELGTHIALLKVRD 371
Y + ++A DGGG+ V + V D NDN PEV SL + + EDA GT I L D
Sbjct: 314 FYEMEIQAEDGGGLKGWTKVLISVEDVNDNRPEVTITSLFSPVREDAPQGTVILLFNAHD 373
Query: 372 KDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNITVTATDRGKPPLS 431
+DS NG+V C ++ ++ F + S + Y+L+T +LDRE+ EYNITVTATDRG PPLS
Sbjct: 374 RDSGKNGQVVCSIQENLSFTLENSEEDYYRLLTAQILDREKASEYNITVTATDRGTPPLS 433
Query: 432 SSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPDLGPNGQVSYCIMA 491
+ ITL + D+NDN P FSQ+SY V++ ENN G SI V A DPD N +V Y +
Sbjct: 434 TEIHITLQVTDINDNPPAFSQASYSVYLPENNARGTSIFSVIAYDPDSNENSRVIYSLAE 493
Query: 492 SDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVD 551
++ LS+YVSI++++GV++A +FD+EQ R ++ + A D GSP LS+NVSLR+ V
Sbjct: 494 DTIQGSPLSTYVSINSDTGVLYALCSFDYEQFRDLQMQVTASDSGSPPLSSNVSLRLFVL 553
Query: 552 DRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASE 611
D+NDNAP +LYPAL DGS ++ P +AEPGYLVTKVVAVD DSG NAWLSY + +ASE
Sbjct: 554 DQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLFKASE 613
Query: 612 PGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLP 671
PGLFS+GL TGEVRTARAL DRDA++Q L+VAV+D GQPPLSAT TL + ADS+ ++L
Sbjct: 614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAIADSIPDILA 673
Query: 672 DITDRPDPSDLQA-ELQFYLVVALALISVLFLVAMILAIALRLRRSSSPASWSCFQPGLC 730
D+ P+DL+A +L YLVVA+A++S +FL +I +ALRLR S GL
Sbjct: 674 DLGSLQIPADLEASDLTLYLVVAVAVVSCVFLTFVITLLALRLRHWHSSHLLRATSDGL- 732
Query: 731 VKSESVVPPNYSEG---------TLPYSYNLCVAHTGKTEFNFLK-------CSEQLSSG 774
+ VP ++ G T ++L A + K+ F + S+Q
Sbjct: 733 ----AGVPTSHFVGVDGVRAFLQTYSQEFSL-TADSRKSHLIFPQPNYADTLISQQSCEK 787
Query: 775 QDILCGDSSGALFPLCNSSELTSHQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 834
+ LC S + FP+ + QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF
Sbjct: 788 NEPLC-VSVDSKFPI---EDTPLVPQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 843
Query: 835 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 894
DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT
Sbjct: 844 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 903
Query: 895 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 923
LTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 904 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|11056030 protocadherin gamma subfamily A, 2 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 905 bits (2339), Expect = 0.0
Identities = 491/928 (52%), Positives = 623/928 (67%), Gaps = 29/928 (3%)
Query: 16 VLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSE--KP 73
VL FLL+ A QIRY + EE+ +GS VGN+A DLG L + +R+ S
Sbjct: 14 VLLCFLLATLWEARAGQIRYSVREEIDRGSFVGNIAKDLGLEPLALAEQGVRIVSRGRSQ 73
Query: 74 YFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKF 133
F ++ SG L+ ++R+DREE+C + C L F + E+ L Y V VEI DIND+ P+F
Sbjct: 74 LFALNPRSGSLVTANRIDREELCAQSAPCLLNFNILLEDKLTIYSVEVEITDINDNAPRF 133
Query: 134 TQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSLINKEKSDGSKYPE 193
EL+ISE+ PG R L +AHDAD+G N LQ Y L+P+DHFSL + +DG+KYPE
Sbjct: 134 GVEELELKISETTTPGFRIPLKNAHDADVGENALQKYALNPNDHFSLDVRRGADGNKYPE 193
Query: 194 MVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAPVFSQDVYRVSLSE 253
+VL+ LDRE++ +HL L A D G P LS T++I V V DANDNAPVF+Q YR+S+ E
Sbjct: 194 LVLERSLDREEEAVHHLVLVASDGGDPVLSGTSRICVKVLDANDNAPVFTQPEYRISIPE 253
Query: 254 NVYPGTTVLQVTATDQDEGVNAEITFSFSEASQITQ--FDLNSNTGEITVLNTLDFEEVK 311
N GT +L VTATD DEG A++ + ++ T F+L S +GE+T++ LD+E+
Sbjct: 254 NTLVGTRILTVTATDADEGYYAQVVYFLEKSPGETSEVFELKSTSGELTIIKDLDYEDAT 313
Query: 312 EYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDAELGTHIALLKVRD 371
+ I +EA+DG G++ + V V V+D NDNAPE S + + ED+ GT I L V D
Sbjct: 314 FHEIDIEAQDGPGLLTRAKVIVTVLDVNDNAPEFYMTSATSSVSEDSLPGTIIGLFNVHD 373
Query: 372 KDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNITVTATDRGKPPLS 431
+DS N TC L D+PFK+ S N Y+LVT LDREQ YNIT+TA D G P LS
Sbjct: 374 RDSGQNAFTTCSLPEDLPFKLEKSVDNYYRLVTTRALDREQFSFYNITLTAKDGGNPSLS 433
Query: 432 SSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPDLGPNGQVSYCIMA 491
+ + I L + D+NDNAP FS++SY ++ ENNP GAS+ V A DPD N V+Y
Sbjct: 434 TDAHILLQVADINDNAPAFSRTSYSTYIPENNPRGASVFSVTAHDPDSNDNAHVTYSFAE 493
Query: 492 SDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVD 551
++ LSSY+SI++++GV++A R+FD+EQLR ++ + ARD G+P LS+NVSL + V
Sbjct: 494 DTVQGAPLSSYISINSDTGVLYALRSFDYEQLRDLQVWVIARDSGNPPLSSNVSLSLFVL 553
Query: 552 DRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASE 611
D+NDNAP +LYPA DGS ++ P +AEPGYLVTKVVAVD DSG NAWLSYH+L+ASE
Sbjct: 554 DQNDNAPEILYPAFPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYHLLKASE 613
Query: 612 PGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLP 671
PGLFS+GL TGEVRTARAL DRDA++Q L+VA++D GQPPLSAT TL + AD + ++L
Sbjct: 614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAIQDHGQPPLSATVTLTVAVADRIPDILA 673
Query: 672 DITD-RPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRR-------SSSPASWS 723
D+ P ++L YLVVA+A +S +FL +I+ +A RLRR +S S +
Sbjct: 674 DLGSLEPSAIPNDSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGSLT 733
Query: 724 CFQPGLCVKSESVVPPNYSEGTLPYSYNLCV-AHTGKTEFNFLK-------CSEQLSSGQ 775
Q V + V YS+ + + A + K+ F + S++ +
Sbjct: 734 GMQSSHFVGVDGV-----RAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKK 788
Query: 776 DILCGDSSGALFPLCNSSELTSHQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFD 835
D L S L E T QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFD
Sbjct: 789 DFLSAPQS----LLEEEREETFSQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFD 844
Query: 836 TEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATL 895
TEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATL
Sbjct: 845 TEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATL 904
Query: 896 TNAAGKRDGKAPAGGNGNKKKSGKKEKK 923
TNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 905 TNAAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 900 bits (2325), Expect = 0.0
Identities = 483/922 (52%), Positives = 625/922 (67%), Gaps = 19/922 (2%)
Query: 17 LFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSE--KPY 74
L LL C QIRY + EE+ KGS VGN+A DLG +EL R +R+ S
Sbjct: 15 LLCALLGTLCETGSGQIRYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSRGRTQL 74
Query: 75 FTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKFT 134
F+++ +SG L+ + R+DREE+C + P C ++ + E+ L + V +EI+DIND+ P F
Sbjct: 75 FSLNPQSGSLVTAERIDREELCAQIPLCLVKINILVEDKLKIFEVEIEIKDINDNAPNFP 134
Query: 135 QNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSLINKEKSDGSKYPEM 194
E++I E PGTRF + +A D D+G N+LQNY+LSP+D+FSL S+G+KYPE+
Sbjct: 135 TEELEIKIGELTVPGTRFPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGAKYPEL 194
Query: 195 VLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAPVFSQDVYRVSLSEN 254
VL+ LDREK++ + L L A D G P S I V+V DANDN P+F+Q YRVS+ EN
Sbjct: 195 VLERALDREKKEIHQLVLVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRVSVWEN 254
Query: 255 VYPGTTVLQVTATDQDEGVNAEITFSFSEA-SQITQ-FDLNSNTGEITVLNTLDFEEVKE 312
V GT +L V ATD DEG NA++++ + +I + F LNS +GE+++L +LD+E+
Sbjct: 255 VPVGTRLLTVNATDPDEGFNAQVSYILDKMPGKIAEIFHLNSVSGEVSILKSLDYEDAMF 314
Query: 313 YSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDAELGTHIALLKVRDK 372
Y I +EA+DG G++++ + V V+D NDNAPE+ SL + + E+ +G IAL+ V D+
Sbjct: 315 YEIKIEAQDGPGLLSRAKILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIALIDVHDR 374
Query: 373 DSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNITVTATDRGKPPLSS 432
DS NG+V + G++PFK+ S Y+LVT LDREQ EYNI++ A+D G PPLS+
Sbjct: 375 DSGQNGQVEVFVLGNLPFKLEKSIDQYYRLVTATSLDREQISEYNISLRASDGGSPPLST 434
Query: 433 SSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPDLGPNGQVSYCIMAS 492
+ ITLH+ D+NDN P F SY ++ ENNP GASI V A DPD N +++Y +
Sbjct: 435 ETHITLHVIDINDNPPTFPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARITYALTED 494
Query: 493 DLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVDD 552
L+ LSS+VSI++ +GV++A R+FD+EQ R +L + A D G+P LS+NVSL + V D
Sbjct: 495 TLQGAPLSSFVSINSNTGVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLNLFVLD 554
Query: 553 RNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 612
+NDNAP +LYPAL DGS ++ P +AEPGYLVTKVVAVD DSG NAWLSY +L+ASEP
Sbjct: 555 QNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEP 614
Query: 613 GLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPD 672
GLFS+GL TGEVRTARAL DRDA++Q L+VAV+D GQPPLSAT TL + AD + ++L D
Sbjct: 615 GLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDILAD 674
Query: 673 ITD-RPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSSPASWSCFQPGLCV 731
+ P ++L YLVVA+A +S +FL +I+ +ALRLRR GL
Sbjct: 675 LGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLRRWHKSRLLQASGGGLAS 734
Query: 732 K--SESVVPPNYSEGTLPYSYNLCV-AHTGKTEFNFLKCSEQLSSGQDILCGDSSGALFP 788
S V YS+ + + A + K+ F Q + ++ +S P
Sbjct: 735 TPGSHFVGADGVRAFLQTYSHEVSLTADSRKSHLIF----PQPNYADTLISQESCEKSEP 790
Query: 789 LCNSSELTSH-------QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQA 841
L + +L QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQA
Sbjct: 791 LLITQDLLEMKGDSNLLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQA 850
Query: 842 MILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK 901
MILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK
Sbjct: 851 MILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK 910
Query: 902 RDGKAPAGGNGNKKKSGKKEKK 923
RDGKAPAGGNGNKKKSGKKEKK
Sbjct: 911 RDGKAPAGGNGNKKKSGKKEKK 932
>gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 899 bits (2322), Expect = 0.0
Identities = 495/920 (53%), Positives = 626/920 (68%), Gaps = 17/920 (1%)
Query: 20 FLLSLFC----PALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSE--KP 73
FLLS+ A +I Y + EE KGS VG++A DLG +EL R +R+ S
Sbjct: 14 FLLSILLGTPWEAWAGRILYSVSEETDKGSFVGDIAKDLGLEPRELAERGVRIISRGRTQ 73
Query: 74 YFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKF 133
F ++ SG L+ + R+DREEIC + C + F + E+ +N Y ++VEI DIND+ P+F
Sbjct: 74 LFALNQRSGSLVTAGRIDREEICAQSARCLVNFNILMEDKMNLYPIDVEIIDINDNVPRF 133
Query: 134 TQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSLINKEKSDGSKYPE 193
++I E+ PG RF L A D D+G+N+LQ+YQLSP+ HFSL + D +KYPE
Sbjct: 134 LTEEINVKIMENTAPGVRFPLSEAGDPDVGTNSLQSYQLSPNRHFSLAVQSGDDETKYPE 193
Query: 194 MVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAPVFSQDVYRVSLSE 253
+VL+ LDRE+++ +HL LTA D G PP SSTA I V V D ND+ PVFS Y+V++ E
Sbjct: 194 LVLERVLDREEERVHHLVLTASDGGDPPRSSTAHIQVTVVDVNDHTPVFSLPQYQVTVPE 253
Query: 254 NVYPGTTVLQVTATDQDEGVNAEITFSFSEASQIT--QFDLNSNTGEITVLNTLDFEEVK 311
NV GT +L V A D DEGVN E+T+SF + + F LNS TGEI+ L LD+EE
Sbjct: 254 NVPVGTRLLTVHAIDLDEGVNGEVTYSFRKITPKLPKMFHLNSLTGEISTLEGLDYEETA 313
Query: 312 EYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDAELGTHIALLKVRD 371
Y + ++A+DG G + + V + V+D NDNAPEV SL + I ED LGT IAL ++D
Sbjct: 314 FYEMEVQAQDGPGSLTKAKVLITVLDVNDNAPEVTMTSLSSSIPEDTPLGTVIALFYLQD 373
Query: 372 KDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNITVTATDRGKPPLS 431
+DS NGEVTC + ++PFK+ S N Y+LVT LDRE YNIT+ ATD G PPLS
Sbjct: 374 RDSGKNGEVTCTIPENLPFKLEKSIDNYYRLVTTKNLDRETLSLYNITLKATDGGTPPLS 433
Query: 432 SSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPDLGPNGQVSYCIMA 491
+ I + + D NDN P F SSY V++AENNP GASI V A D D N Q++Y +
Sbjct: 434 RETHIFMQVADTNDNPPTFPHSSYSVYIAENNPRGASIFLVTAQDHDSEDNAQITYSLAE 493
Query: 492 SDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVD 551
++ +SSYVSI++++GV++A ++FD+EQLR +L + A D G P LS+N+SL + V
Sbjct: 494 DTIQGAPVSSYVSINSDTGVLYALQSFDYEQLRELQLRVTAHDSGDPPLSSNMSLSLFVL 553
Query: 552 DRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASE 611
D+NDN P +LYPAL DGS ++ P +AEPGYLVTKVVAVD DSG NAWLSY +L+ASE
Sbjct: 554 DQNDNPPEILYPALPTDGSTGMELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYLLLKASE 613
Query: 612 PGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLP 671
PGLF++GL TGEVRTARAL DRDA++Q L+VAV+D GQPPLSAT TL + ADS+ EVL
Sbjct: 614 PGLFAVGLYTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLA 673
Query: 672 DITD-RPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSSPASWSCFQPGLC 730
D+ P +L YLVVA+A +S +FL +++ +ALRLRR + GL
Sbjct: 674 DLGSLEPSDGPYNYDLTLYLVVAVATVSCVFLAFVLVLLALRLRRWHKSRLLQASEGGLA 733
Query: 731 -VKSESVVPPNYSEGTL-PYSYNLCV-AHTGKTEFNFLKCS--EQLSSGQDILCGDS--S 783
V + V + + L YS+ + + A + K+ F + + + L S + DS +
Sbjct: 734 NVPTSHFVGMDGVQAFLQTYSHEVSLTADSRKSHLIFPQPNYVDMLISQESCEKNDSLLT 793
Query: 784 GALFPLCNSSELTSHQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMI 843
F C + L S QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMI
Sbjct: 794 SVDFQECKEN-LPSIQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMI 852
Query: 844 LASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRD 903
LASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRD
Sbjct: 853 LASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRD 912
Query: 904 GKAPAGGNGNKKKSGKKEKK 923
GKAPAGGNGNKKKSGKKEKK
Sbjct: 913 GKAPAGGNGNKKKSGKKEKK 932
>gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precursor
[Homo sapiens]
Length = 936
Score = 892 bits (2305), Expect = 0.0
Identities = 487/923 (52%), Positives = 623/923 (67%), Gaps = 21/923 (2%)
Query: 19 LFLLSLFC----PALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSE--K 72
L LL LF A QI Y IPEE+ KGS VGN++ DLG + +EL R +R+ S
Sbjct: 17 LVLLCLFFGIPWEAGARQISYSIPEELEKGSFVGNISKDLGLAPRELAERGVRIVSRGRT 76
Query: 73 PYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPK 132
F+++ SG L+ + R+DREE+C + C + F + E+ + + + +E+ DIND+ PK
Sbjct: 77 QLFSLNPRSGSLITAGRIDREELCAQSARCVVSFNILVEDRVKLFGIEIEVTDINDNAPK 136
Query: 133 FTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSLINKEKSDGSKYP 192
F + +++I+E+ G RF L A D D+G N+LQ+YQLSP+ HFSL + +++G KYP
Sbjct: 137 FQAENLDVKINENVAAGMRFPLPEAIDPDVGVNSLQSYQLSPNKHFSLRVQSRANGVKYP 196
Query: 193 EMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAPVFSQDVYRVSLS 252
E+VL+ LDRE++ +HL LTA D G P S T + V V DANDNAPVF+ YRVS+
Sbjct: 197 ELVLEHSLDREEEAIHHLVLTASDGGDPLRSGTVLVSVTVFDANDNAPVFTLPEYRVSVP 256
Query: 253 ENVYPGTTVLQVTATDQDEGVNAEITFSFSEA--SQITQFDLNSNTGEITVLNTLDFEEV 310
EN+ GT +L VTATD+DEG N E+T+SF + +Q+ +F LN TGEI + LD+EE
Sbjct: 257 ENLPVGTQLLTVTATDRDEGANGEVTYSFRKLPDTQLLKFQLNKYTGEIKISENLDYEET 316
Query: 311 KEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDAELGTHIALLKVR 370
Y I ++A DGG +A V + V D NDN+PE+ SL + + ED+ LGT +ALL V
Sbjct: 317 GFYEIEIQAEDGGAYLATAKVLITVEDVNDNSPELTITSLFSPVTEDSPLGTVVALLNVH 376
Query: 371 DKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNITVTATDRGKPPL 430
D DS NG+VTC + +PFK+ S + Y+LV LDREQ YNITVTATD G PPL
Sbjct: 377 DLDSEQNGQVTCSILAYLPFKLEKSIDSYYRLVIHRALDREQVSSYNITVTATDGGSPPL 436
Query: 431 SSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPDLGPNGQVSYCIM 490
S+ + L + D+NDN P FSQ SY ++ ENN GASI V A DPD N Q+ Y +
Sbjct: 437 STEAHFMLQVADINDNPPTFSQVSYFTYIPENNARGASIFSVTALDPDSKENAQIIYSLA 496
Query: 491 ASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLV 550
++ LSSY+SI++++GV++A R+FD+EQ ++ + A D G P LS+NVSL + V
Sbjct: 497 EDTIQGVPLSSYISINSDTGVLYALRSFDYEQFHELQMQVTASDSGDPPLSSNVSLSLFV 556
Query: 551 DDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGHNAWLSYHVLQAS 610
D+NDNAP +LYPAL DGS ++ P +AEPGYLVTKVVAVD DSG NAWLSY +L+AS
Sbjct: 557 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKAS 616
Query: 611 EPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVL 670
EPGLF++G TGEVRTARAL DRDA++Q L+VAV+D GQPPLSAT TL + ADS+ +VL
Sbjct: 617 EPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPQVL 676
Query: 671 PDITDRPDPSDLQ-AELQFYLVVALALISVLFLVAMILAIALRLRRSSSPASWSCFQPGL 729
D+ P++ + ++L YLVVA+A +S +FL +I+ +A RLRR GL
Sbjct: 677 ADLGSFESPANSETSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGGL 736
Query: 730 CVKSES--VVPPNYSEGTLPYSYNLCV-AHTGKTEFNFLK--CSEQLSSGQDILCGDSSG 784
S S V YS+ + + A + K+ F + ++ L S + D
Sbjct: 737 TGVSGSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKNDPLS 796
Query: 785 AL----FPLCNSSELTSHQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQ 840
L FP+ + QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQ
Sbjct: 797 LLDDSKFPI---EDTPLVPQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQ 853
Query: 841 AMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAG 900
AMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAG
Sbjct: 854 AMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAG 913
Query: 901 KRDGKAPAGGNGNKKKSGKKEKK 923
KRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 914 KRDGKAPAGGNGNKKKSGKKEKK 936
>gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 891 bits (2303), Expect = 0.0
Identities = 483/918 (52%), Positives = 619/918 (67%), Gaps = 10/918 (1%)
Query: 16 VLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSE--KP 73
+L L L A I Y +PEE KGS VGN+A DLG QEL +R+ S P
Sbjct: 14 MLLCLSLELLLEAGAGNIHYSVPEETDKGSFVGNIAKDLGLQPQELADGGVRIVSRGRMP 73
Query: 74 YFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKF 133
F ++ SG L+ + R+DREE+C + C + F + E+ + + V VEI DIND+TP+F
Sbjct: 74 LFALNPRSGSLITARRIDREELCAQSMPCLVSFNILVEDKMKLFPVEVEIIDINDNTPQF 133
Query: 134 TQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSLINKEKSDGSKYPE 193
E +++E PGTR L D D+G N+LQ+YQLS + HFSL ++ +DG ++PE
Sbjct: 134 QLEELEFKMNEITTPGTRVSLPFGQDLDVGMNSLQSYQLSSNPHFSLDVQQGADGPQHPE 193
Query: 194 MVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAPVFSQDVYRVSLSE 253
MVL++PLDRE++ +HL LTA D G P S T +I++ V DANDN P F+Q Y +++ E
Sbjct: 194 MVLQSPLDREEEAVHHLILTASDGGEPVRSGTLRIYIQVVDANDNPPAFTQAQYHINVPE 253
Query: 254 NVYPGTTVLQVTATDQDEGVNAEITFSFSEAS-QITQ-FDLNSNTGEITVLNTLDFEEVK 311
NV GT +L V ATD DEG N E+T+SF ++ Q F L+S TGEI+ LDFEE K
Sbjct: 254 NVPLGTQLLMVNATDPDEGANGEVTYSFHNVDHRVAQIFRLDSYTGEISNKEPLDFEEYK 313
Query: 312 EYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDAELGTHIALLKVRD 371
YS+ ++A+DG G++A+ V ++V+D NDNAPEV S+ + E+ GT IAL+ V D
Sbjct: 314 MYSMEVQAQDGAGLMAKVKVLIKVLDVNDNAPEVTITSVTTAVPENFPPGTIIALISVHD 373
Query: 372 KDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNITVTATDRGKPPLS 431
+DS NG TC + G++PFK+ N Y+LVT+ LDRE YNIT+TA D+G P LS
Sbjct: 374 QDSGDNGYTTCFIPGNLPFKLEKLVDNYYRLVTERTLDRELISGYNITITAIDQGTPALS 433
Query: 432 SSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPDLGPNGQVSYCIMA 491
+ + I+L + D+NDN+PVF Q SY ++ ENNP GASI VRA D D N Q++Y ++
Sbjct: 434 TETHISLLVTDINDNSPVFHQDSYSAYIPENNPRGASIFSVRAHDLDSNENAQITYSLIE 493
Query: 492 SDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVD 551
++ LS+Y+SI++++GV++A R+FD+EQ R +L + ARD G P LS+NVSL + +
Sbjct: 494 DTIQGAPLSAYLSINSDTGVLYALRSFDYEQFRDMQLKVMARDSGDPPLSSNVSLSLFLL 553
Query: 552 DRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASE 611
D+NDNAP +LYPAL DGS ++ P +AEPGYLVTKVVAVD DSG NAWLSY +L+ASE
Sbjct: 554 DQNDNAPEILYPALPTDGSTGVELAPLSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASE 613
Query: 612 PGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLP 671
PGLFS+GL TGEVRTARAL DRDA++Q L+VAV+D GQPPLSAT TL + AD + ++L
Sbjct: 614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRISDILA 673
Query: 672 DITD-RPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSSPASWSCFQPGLC 730
D+ P ++L YLVVA A +S +FL +I+ +A RLRR GL
Sbjct: 674 DLGSLEPSAKPNDSDLTLYLVVAAAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGGLA 733
Query: 731 VK--SESVVPPNYSEGTLPYSYNLCV-AHTGKTEFNFLK--CSEQLSSGQDILCGDSSGA 785
S V YS+ + + A + K+ F + ++ L S + A
Sbjct: 734 SMPGSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKKGFLSA 793
Query: 786 LFPLCNSSELTSHQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILA 845
L + QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILA
Sbjct: 794 PQSLLEDKKEPFSQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILA 853
Query: 846 SASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGK 905
SASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGK
Sbjct: 854 SASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGK 913
Query: 906 APAGGNGNKKKSGKKEKK 923
APAGGNGNKKKSGKKEKK
Sbjct: 914 APAGGNGNKKKSGKKEKK 931
>gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 880 bits (2275), Expect = 0.0
Identities = 479/922 (51%), Positives = 618/922 (67%), Gaps = 28/922 (3%)
Query: 21 LLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSE--KPYFTVS 78
LL + EQI Y + EE +GSVVGN+A DLG + +EL R +R+ S F ++
Sbjct: 19 LLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVSRGRTQLFALN 78
Query: 79 AESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKFTQNSF 138
SG L+ + R+DREE+C + P C E + E+ + V VEI D+ND+ P F
Sbjct: 79 PRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVNDNPPSFGTEQR 138
Query: 139 ELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSLINKEKSDGSKYPEMVLKT 198
E++++E+ PG RF L A D D+G N+LQ YQL+ + +FSL + +DG KYPE+VL+
Sbjct: 139 EIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADGIKYPELVLER 198
Query: 199 PLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAPVFSQDVYRVSLSENVYPG 258
LDRE++ +HL LTA D G P S TA+I +++ D NDNAPVF+Q Y VS+ ENV G
Sbjct: 199 ALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHVSVRENVPVG 258
Query: 259 TTVLQVTATDQDEGVNAEITFSFSEA-SQITQ-FDLNSNTGEITVLNTLDFEEVKEYSIV 316
T +L V ATD DEG N ++T+SF + +I+Q F LNS +G+IT+L LD+E+ Y I
Sbjct: 259 TRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGLDYEDSGFYDID 318
Query: 317 LEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDAELGTHIALLKVRDKDSRH 376
+EA DG G+ A+ V V V+DENDNAPEV SL + + E + GT IAL V D DS
Sbjct: 319 VEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFNVHDSDSGG 378
Query: 377 NGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNITVTATDRGKPPLSSSSSI 436
NG VTC + ++PF + + N Y+L+T LDRE+ EYNITVTATD+G PPLS+ + I
Sbjct: 379 NGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTPPLSTETHI 438
Query: 437 TLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPDLGPNGQVSYCIMASDLEQ 496
+L + D+NDN P F +SY ++ ENNP GASI + A DPD G N +++Y + +
Sbjct: 439 SLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYSLAEDTFQG 498
Query: 497 RELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVDDRNDN 556
LSSYVSI++ +G+++A +FD+EQ R +L + A D G P LS+NVSL + V D+NDN
Sbjct: 499 APLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSLSLFVLDQNDN 558
Query: 557 APRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFS 616
P +LYP DGS ++ P +A+ GYLVTKVVAVD DSG NAWLSY +L++SEPGLF+
Sbjct: 559 VPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLLKSSEPGLFA 618
Query: 617 LGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDITD- 675
+GL TGEVRTARAL DRDA++QRL+V V+D GQPPLSAT TL + ADS+ +VL D+
Sbjct: 619 VGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSIPDVLADLGSL 678
Query: 676 RPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSSPASWSCFQPGLCVKSES 735
+P + L YLVVA+A +S +FL + + +AL+LRR L +
Sbjct: 679 KPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKSRLLHAEGSRL-----A 733
Query: 736 VVPPNYSEGT-------LPYSYNLCV-AHTGKTEFNFLKCSEQLSSGQDILCGDSSGALF 787
VP ++ G YS+ + + A + K+ F Q S ++ +S
Sbjct: 734 GVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIF----SQPSYADTLISRESCEKSE 789
Query: 788 PLCNSSEL------TSHQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQA 841
PL + +L + QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQA
Sbjct: 790 PLLITQDLLETKGDPNLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQA 849
Query: 842 MILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK 901
MILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK
Sbjct: 850 MILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK 909
Query: 902 RDGKAPAGGNGNKKKSGKKEKK 923
RDGKAPAGGNGNKKKSGKKEKK
Sbjct: 910 RDGKAPAGGNGNKKKSGKKEKK 931
>gi|14270484 protocadherin gamma subfamily A, 8 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 880 bits (2273), Expect = 0.0
Identities = 475/904 (52%), Positives = 609/904 (67%), Gaps = 13/904 (1%)
Query: 32 QIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSE--KPYFTVSAESGELLVSSR 89
QIRY +PEE KGS VGN++ DLG ++L +R+ S F ++ SG L+ + R
Sbjct: 30 QIRYSVPEETDKGSFVGNISKDLGLDPRKLAKHGVRIVSRGRTQLFALNPRSGSLITAGR 89
Query: 90 LDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKFTQNSFELQISESAQPG 149
+DREE+C + P C + + E+ + V +EI DIND+ PKF E++I+E A PG
Sbjct: 90 IDREELCAQSPRCLININTLVEDKGKLFGVEIEIIDINDNNPKFQVEDLEVKINEIAVPG 149
Query: 150 TRFILGSAHDADIGSNTLQNYQLSPSDHFSLINKEKSDGSKYPEMVLKTPLDREKQKSYH 209
R+ L A D D+G N+LQ+YQLSP+ HFSL + +G+ PE+VL+ LDRE++ ++H
Sbjct: 150 ARYPLPEAVDPDVGVNSLQSYQLSPNHHFSLDVQTGDNGAINPELVLERALDREEEAAHH 209
Query: 210 LTLTALDFGAPPLSSTAQIHVLVTDANDNAPVFSQDVYRVSLSENVYPGTTVLQVTATDQ 269
L LTA D G PP SST +IHV V D NDNAPVF +YRV + EN+ PGT +L VTA+D
Sbjct: 210 LVLTASDGGKPPRSSTVRIHVTVLDTNDNAPVFPHPIYRVKVLENMPPGTRLLTVTASDP 269
Query: 270 DEGVNAEITFSFSEAS--QITQFDLNSNTGEITVLNTLDFEEVKEYSIVLEARDGGGMIA 327
DEG+N ++ + F + + Q F LN NTGEI++ +LD+EE Y + ++A D G ++
Sbjct: 270 DEGINGKVAYKFRKINEKQTPLFQLNENTGEISIAKSLDYEECSFYEMEIQAEDVGALLG 329
Query: 328 QCTVEVEVIDENDNAPEVIFQSLPNLIMEDAELGTHIALLKVRDKDSRHNGEVTCKLEGD 387
+ + + V D NDN PEVI SL + ++E++ GT IA L V D+DS NG+V C +
Sbjct: 330 RTKLLISVEDVNDNRPEVIITSLFSPVLENSLPGTVIAFLSVHDQDSGKNGQVVCYTRDN 389
Query: 388 VPFKILTSSRNTYKLVTDAVLDREQNPEYNITVTATDRGKPPLSSSSSITLHIGDVNDNA 447
+PFK+ S N Y+LVT LDRE YNITV A+D G PPLS+ + I LH+ D+NDN
Sbjct: 390 LPFKLEKSIGNYYRLVTRKYLDRENVSIYNITVMASDLGTPPLSTETQIALHVADINDNP 449
Query: 448 PVFSQSSYIVHVAENNPPGASISQVRASDPDLGPNGQVSYCIMASDLEQRELSSYVSISA 507
P F +SY ++ ENN GASI + A DPD N QV+Y + L+ LSSY+SI++
Sbjct: 450 PTFPHASYSAYILENNLRGASIFSLTAHDPDSQENAQVTYSVTEDTLQGAPLSSYISINS 509
Query: 508 ESGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVDDRNDNAPRVLYPALGP 567
++GV++A ++FD+EQ+R +L + A D G P LS+N+SL + V D+NDNAP +LYPAL
Sbjct: 510 DTGVLYALQSFDYEQIRDLQLLVTASDSGDPPLSSNMSLSLFVLDQNDNAPEILYPALPT 569
Query: 568 DGSALFDMVPHAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRTA 627
DGS ++ P +AE GYLVTKVVAVD DSG NAWLSY +L+ASEPGLFS+GL TGEVRTA
Sbjct: 570 DGSTGVELAPRSAERGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTA 629
Query: 628 RALGDRDAVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDITD-RPDPSDLQAEL 686
RAL DRDA++Q L+VAV+D GQPPLSAT TL + ADS+ EVL ++ +P + L
Sbjct: 630 RALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLTELGSLKPSVDPNDSSL 689
Query: 687 QFYLVVALALISVLFLVAMILAIALRLRR-SSSPASWSCFQPGLCVKSESVVPPNYSEGT 745
YLVVA+A IS +FL + + + LRLRR S + V + V +
Sbjct: 690 TLYLVVAVAAISCVFLAFVAVLLGLRLRRWHKSRLLQDSGGRLVGVPASHFVGVEEVQAF 749
Query: 746 LPYSYNLCVAHTGKTEFNFL-----KCSEQLSSGQDILCGDSSGALFPLCNSSELTSH-Q 799
L +Y+ V+ T + + L ++ L S + DS H Q
Sbjct: 750 L-QTYSQEVSLTADSRKSHLIFPQPNYADMLISQEGCEKNDSLLTSVDFHEYKNEADHGQ 808
Query: 800 QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 859
QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG
Sbjct: 809 QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 868
Query: 860 GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 919
GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK
Sbjct: 869 GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 928
Query: 920 KEKK 923
KEKK
Sbjct: 929 KEKK 932
>gi|11128023 protocadherin gamma subfamily C, 5 isoform 1 precursor
[Homo sapiens]
Length = 944
Score = 821 bits (2121), Expect = 0.0
Identities = 469/937 (50%), Positives = 596/937 (63%), Gaps = 40/937 (4%)
Query: 19 LFLLSLFCPA-LCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSEKP--YF 75
L +LSL C + Q+RY + EE G++VGN+A DLG + +L +R+L++ SE+ YF
Sbjct: 16 LCMLSLCCWGWVSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLLSRRLQLGSEENGRYF 75
Query: 76 TVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKFTQ 135
++S SG L V+ ++DRE +CG +C L + V E+PL V VEI D+ND++P F
Sbjct: 76 SLSLMSGALAVNQKIDRESLCGASTSCLLPVQVVTEHPLELIRVEVEILDLNDNSPSFAT 135
Query: 136 NSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSLINKEKSDGSKYPEMV 195
E++ISESA G RF L SA D D+G+NT+ Y LSP+ HFSL K DG +PE+V
Sbjct: 136 PEREMRISESAASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDGKPFPELV 195
Query: 196 LKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAPVFSQDVYRVSLSENV 255
L+ LDRE Q + L LTA+D G P S T I V+V D NDNAP F V RV + EN
Sbjct: 196 LEQQLDREAQARHQLVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLRVGIPENA 255
Query: 256 YPGTTVLQVTATDQDEGVNAEITFSFSE-ASQITQ--FDLNSNTGEITVLNTLDFEEVKE 312
GT +L++ ATD DEG N ++ +SF + S+ + F L+ ++G I VL +DFEE +
Sbjct: 256 PIGTLLLRLNATDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSGAIHVLGPIDFEESRF 315
Query: 313 YSIVLEARDGG--GMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDAELGTHIALLKVR 370
Y I ARD G M C ++V+V D NDNAPEV+ SL N ++E +GT + L VR
Sbjct: 316 YEIHARARDQGQPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVLESTPVGTVVGLFNVR 375
Query: 371 DKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNITVTATDRGKPPL 430
D+DS NGEV+ + D+PF+I S N Y L+T LDRE Y I + A+D G P L
Sbjct: 376 DRDSGRNGEVSLDISPDLPFQI-KPSENHYSLLTSQPLDREATSHYIIELLASDAGSPSL 434
Query: 431 SSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPDLGPNGQVSYCIM 490
+I L+I DVNDNAP F+Q Y ++ EN PPG+ + V ASDPD G N +++Y I+
Sbjct: 435 HKHLTIRLNISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDNARLTYSIV 494
Query: 491 ASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLV 550
+ ++ SS+V ++ E G +FAQR FD+E L+ ++ + RD GSP L AN SL V V
Sbjct: 495 GNQVQGAPASSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSPPLHANTSLHVFV 554
Query: 551 DDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGHNAWLSYHVL-QA 609
D NDNAP VL+P + SA +P +A PG LVTKV AVDAD+GHNAWLSY +L Q+
Sbjct: 555 LDENDNAPAVLHPRPDWEHSAP-QRLPRSAPPGSLVTKVTAVDADAGHNAWLSYSLLPQS 613
Query: 610 SEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEV 669
+ PGLF + TGEVRTARAL + D+ Q+++V VRD G P LS+TAT+ LV D E
Sbjct: 614 TAPGLFLVSTHTGEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTATVLLVLEDEDPEE 673
Query: 670 LPDITDRPDPSDLQAELQFYLVVALALISVLFLVAMILAIA----------------LRL 713
+P +D +++L YL+VALA +S+L LV A R
Sbjct: 674 MPKSSDFLIHPPERSDLTLYLIVALATVSLLSLVTFTFLSAKCLQGNADGDGGGGQCCRR 733
Query: 714 RRSSSPASWSCFQPGLCVKSESVVPPNYSEGTL------PYSYNLCVAHTGK-TEFNFLK 766
+ S SP + P L V S+ + Y E TL + Y C + ++F FL+
Sbjct: 734 QDSPSPDFYKQSSPNLQVSSDGTL--KYMEVTLRPTDSQSHCYRTCFSPASDGSDFTFLR 791
Query: 767 CSEQLSSGQDILCGDSSGALFPLCNSSELTSHQQAPPNTDWRFSQAQRPGTSGSQNGDDT 826
LS Q A+ N+ S QQAPPNTDWRFSQAQRPGTSGSQNGDDT
Sbjct: 792 ---PLSVQQPTALALEPDAIRSRSNTLRERS-QQAPPNTDWRFSQAQRPGTSGSQNGDDT 847
Query: 827 GTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNV 886
GTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNV
Sbjct: 848 GTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNV 907
Query: 887 YIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 923
YIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 908 YIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 944
>gi|14277675 protocadherin gamma subfamily C, 3 isoform 1 precursor
[Homo sapiens]
Length = 934
Score = 820 bits (2117), Expect = 0.0
Identities = 447/909 (49%), Positives = 588/909 (64%), Gaps = 25/909 (2%)
Query: 33 IRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSS--EKPYFTVSAESGELLVSSRL 90
I Y IPEE KG VGN+ +LG + L R+ RV S + +F V+ E+GE+ V+ RL
Sbjct: 33 IHYEIPEEREKGFAVGNVVANLGLDLGSLSARRFRVVSGASRRFFEVNRETGEMFVNDRL 92
Query: 91 DREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKFTQNSFELQISESAQPGT 150
DREE+CG P+C + E V ENPL + V V I+DIND+ P F +L+ISE+ PGT
Sbjct: 93 DREELCGTLPSCTVTLELVVENPLELFSVEVVIQDINDNNPAFPTQEMKLEISEAVAPGT 152
Query: 151 RFILGSAHDADIGSNTLQNYQLSPSDHFSLINKEKSDGSKYPEMVLKTPLDREKQKSYHL 210
RF L SAHD D+GSN+LQ Y+LS +++F+L + + D +KY E+VL+ LDRE++ S L
Sbjct: 153 RFPLESAHDPDVGSNSLQTYELSRNEYFALRVQTREDSTKYAELVLERALDREREPSLQL 212
Query: 211 TLTALDFGAPPLSSTAQIHVLVTDANDNAPVFSQDVYRVSLSENVYPGTTVLQVTATDQD 270
LTALD G P LS++ IH+ V DANDNAPVF+Q +YR + E+ GT V+QV ATD D
Sbjct: 213 VLTALDGGTPALSASLPIHIKVLDANDNAPVFNQSLYRARVLEDAPSGTRVVQVLATDLD 272
Query: 271 EGVNAEITFSF---SEASQITQFDLNSNTGEITVLNTLDFEEVKEYSIVLEARDGGGMI- 326
EG N EI +SF + A F L+ TG +T+ LDFE+ K + I ++A+D G
Sbjct: 273 EGPNGEIIYSFGSHNRAGVRQLFALDLVTGMLTIKGRLDFEDTKLHEIYIQAKDKGANPE 332
Query: 327 -AQCTVEVEVIDENDNAPEVIFQSLPNLIMEDAELGTHIALLKVRDKDSRHNGEVTCKLE 385
A C V VEV+D NDNAPE+ S+ + + EDA LGT IALL V D D+ NG VTC++
Sbjct: 333 GAHCKVLVEVVDVNDNAPEITVTSVYSPVPEDAPLGTVIALLSVTDLDAGENGLVTCEVP 392
Query: 386 GDVPFKILTSSRNTYKLVTDAVLDREQNPEYNITVTATDRGKPPLSSSSSITLHIGDVND 445
+PF + +S +N + L T A LDRE PEYN+++TA D G P LS+ + + + + D+ND
Sbjct: 393 PGLPFSLTSSLKNYFTLKTSADLDRETVPEYNLSITARDAGTPSLSALTIVRVQVSDIND 452
Query: 446 NAPVFSQSSYIVHVAENNPPGASISQVRASDPDLGPNGQVSYCIMASDLEQRELSSYVSI 505
N P SQSSY V++ ENN PGA I + DPD N ++S+ ++ E + Y +I
Sbjct: 453 NPPQSSQSSYDVYIEENNLPGAPILNLSVWDPDAPQNARLSFFLLEQGAETGLVGRYFTI 512
Query: 506 SAESGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVDDRNDNAPRVLYPAL 565
+ ++G+V + D+E R FELT D G+P L+ N+S+ + V DRNDNAP+VLYP
Sbjct: 513 NRDNGIVSSLVPLDYEDRREFELTAHISDGGTPVLATNISVNIFVTDRNDNAPQVLYPR- 571
Query: 566 GPDGSALFDMVPHAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVR 625
P GS++ +M+P G+LV++VV DAD+GHNAWLSY +L + LF++GL TG++
Sbjct: 572 -PGGSSV-EMLPRGTSAGHLVSRVVGWDADAGHNAWLSYSLLGSPNQSLFAIGLHTGQIS 629
Query: 626 TARALGDRDAVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDITDRPDPSDLQAE 685
TAR + D D+ RQ L V ++D G+P LS TATL + + E + P + +
Sbjct: 630 TARPVQDTDSPRQTLTVLIKDNGEPSLSTTATLTVSVTEDSPEARAEFPSGSAPREQKKN 689
Query: 686 LQFYLVVALALISVLFLVAMILAIALRLRRSS-------SPASWSCFQPGLCVKSESVVP 738
L FYL+++L L+SV F+V + I ++ + +P S PG + +++V
Sbjct: 690 LTFYLLLSLILVSVGFVVTVFGVIIFKVYKWKQSRDLYRAPVSSLYRTPGPSLHADAVRG 749
Query: 739 PNYSEGTLPYSYNLCVAHTGKTEFNFLK----CSEQLSSGQDILCGDSSGALFPLCNSSE 794
S P+ Y+ T + L + L+S Q+ L + +
Sbjct: 750 GLMS----PHLYHQVYLTTDSRRSDPLLKKPGAASPLASRQNTLRSCDPVFYRQVLGAES 805
Query: 795 LTSHQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGS 854
QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGS
Sbjct: 806 APPGQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGS 865
Query: 855 STLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNK 914
STLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNK
Sbjct: 866 STLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNK 925
Query: 915 KKSGKKEKK 923
KKSGKKEKK
Sbjct: 926 KKSGKKEKK 934
>gi|11128025 protocadherin gamma subfamily C, 4 isoform 1 precursor
[Homo sapiens]
Length = 938
Score = 805 bits (2080), Expect = 0.0
Identities = 439/929 (47%), Positives = 583/929 (62%), Gaps = 51/929 (5%)
Query: 29 LCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSE--KPYFTVSAESGELLV 86
+C QIRY +PEE +G+ VGN+A D L R+L+V+ E + +F V +SG LL+
Sbjct: 27 VCGQIRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQVAGEVNQRHFRVDLDSGALLI 86
Query: 87 SSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKFTQNSFELQISESA 146
+ +DRE +CG +C + E V E PL Y VEI D+NDH P+F + +L+I E+A
Sbjct: 87 KNPIDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFPRQQLDLEIGEAA 146
Query: 147 QPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSLINKEKSDGSKYPEMVLKTPLDREKQK 206
PG RF L A DAD+GSN++ +Y+LS ++HF+L K++SDGS PE++L+ PLDREKQ
Sbjct: 147 PPGQRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPELLLEKPLDREKQS 206
Query: 207 SYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAPVFSQDVYRVSLSENVYPGTTVLQVTA 266
Y L LTA+D G PP S TA++ V V D NDNAP F Q YR+S+ E+ G ++Q+ A
Sbjct: 207 DYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAPAGMVLIQLNA 266
Query: 267 TDQDEGVNAEITFSFSEASQI---TQFDLNSNTGEITVLNTLDFEEVKEYSIVLEARDGG 323
+D D G + +TF FS + F L+ TG++T+L LDFE Y + ARDGG
Sbjct: 267 SDPDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESENYYEFDVRARDGG 326
Query: 324 G--MIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDAELGTHIALLKVRDKDSRHNGEVT 381
M C++ V+++D NDNAP + S + E AE GT +AL+ V+D DS NG+V+
Sbjct: 327 SPAMEQHCSLRVDLLDVNDNAPYITVTSELGTLPESAEPGTVVALISVQDPDSGSNGDVS 386
Query: 382 CKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNITVTATDRGKPPLSSSSSITLHIG 441
++ +PF + ++ RN + LVT LDRE Y+I VTA+D G PPLS+ +I L+I
Sbjct: 387 LRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPPLSTHRTIFLNIS 446
Query: 442 DVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPDLGPNGQVSYCIMASDLEQRELSS 501
DVNDN P F Q S+ V V ENN PG + + ASDPD G N +SY ++ SS
Sbjct: 447 DVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALISYSLLEPRNRDVSASS 506
Query: 502 YVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVDDRNDNAPRVL 561
++S++ ++G V A R+FD+EQ + + +QARD+G+P LS+ V++R+ V D NDNAP VL
Sbjct: 507 FISLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRLFVLDLNDNAPAVL 566
Query: 562 YPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRT 621
P P GS +P + G+L+TKV AVD DSG+NAW+SY +L+A +P LF++
Sbjct: 567 RPRARP-GSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLLEAPDPSLFAVSRYA 625
Query: 622 GEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDITDRPDPSD 681
GEVRTA + D Q+L++ V+D G PPLS + TL + + V+PD+ + P +
Sbjct: 626 GEVRTAVPI-PADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTHPVVPDLRESSAPRE 684
Query: 682 LQAELQFYLVVALALISVLFLVAMILAIALRLRRSSSPASWSCFQPGLCV------KSES 735
++ L YL V+L I + + + ++ LR ++ + CF G C + E
Sbjct: 685 GESRLTLYLAVSLVAICFVSFGSFVALLSKCLRGAACGVT--CFPAGTCACLTRSRRREG 742
Query: 736 VVPPN--------------------YSEGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQ 775
+ P N +S G P L A T F +K +G+
Sbjct: 743 LPPSNGILRIQLGSDDPIKFVDVGGHSHGCTP----LASAPTRSDSFMMVKSPSAPMAGE 798
Query: 776 DILCGDSSGALFPLCNSSELT-SHQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 834
+ P C S+L +QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF
Sbjct: 799 PVR---------PSCPPSDLLYGLEQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 849
Query: 835 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 894
DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT
Sbjct: 850 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 909
Query: 895 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 923
LTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 910 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 938
>gi|14196457 protocadherin gamma subfamily A, 12 isoform 2 precursor
[Homo sapiens]
Length = 820
Score = 687 bits (1772), Expect = 0.0
Identities = 362/707 (51%), Positives = 486/707 (68%), Gaps = 9/707 (1%)
Query: 16 VLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRV--SSEKP 73
VL LL C QIRY +PEE+ KGS VG+++ DLG +EL R +R+
Sbjct: 14 VLLGILLGTLWETGCTQIRYSVPEELEKGSRVGDISRDLGLEPRELAERGVRIIPRGRTQ 73
Query: 74 YFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKF 133
F ++ SG L+ + R+DREE+C C L + + E+ + Y V VE+ DIND+ P F
Sbjct: 74 LFALNPRSGSLVTAGRIDREELCMGAIKCQLNLDILMEDKVKIYGVEVEVRDINDNAPYF 133
Query: 134 TQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSLINKEKSDGSKYPE 193
++ E++ISE+A RF L A D DIG N+LQ+Y+LSP+ HFSLI + +DGSKYPE
Sbjct: 134 RESELEIKISENAATEMRFPLPHAWDPDIGKNSLQSYELSPNTHFSLIVQNGADGSKYPE 193
Query: 194 MVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAPVFSQDVYRVSLSE 253
+VLK LDRE++ ++HL LTA D G P + TA+I V+V DANDNAP F+Q YR S+ E
Sbjct: 194 LVLKRALDREEKAAHHLVLTASDGGDPVRTGTARIRVMVLDANDNAPAFAQPEYRASVPE 253
Query: 254 NVYPGTTVLQVTATDQDEGVNAEITFSF----SEASQITQFDLNSNTGEITVLNTLDFEE 309
N+ GT +L V ATD DEGVNAE+ +SF +A+Q+ F L+ N+G I+ + LD EE
Sbjct: 254 NLALGTQLLVVNATDPDEGVNAEVRYSFRYVDDKAAQV--FKLDCNSGTISTIGELDHEE 311
Query: 310 VKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDAELGTHIALLKV 369
Y + ++A D G A+ V + V+D NDNAPEV+ SL + + E++ GT IALL V
Sbjct: 312 SGFYQMEVQAMDNAGYSARAKVLITVLDVNDNAPEVVLTSLASSVPENSPRGTLIALLNV 371
Query: 370 RDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNITVTATDRGKPP 429
D+DS NG+V C ++G++PFK+ S N Y LVTD VLDREQ P YNITVTATDRG PP
Sbjct: 372 NDQDSEENGQVICFIQGNLPFKLEKSYGNYYSLVTDIVLDREQVPSYNITVTATDRGTPP 431
Query: 430 LSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPDLGPNGQVSYCI 489
LS+ + I+L++ D NDN PVF Q+SY ++ ENNP G S+ V A DPD N Q++Y +
Sbjct: 432 LSTETHISLNVADTNDNPPVFPQASYSAYIPENNPRGVSLVSVTAHDPDCEENAQITYSL 491
Query: 490 MASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVL 549
+ ++ LSSYVSI++++GV++A +FD+EQ R ++ + ARD G P LS+NVSL +
Sbjct: 492 AENTIQGASLSSYVSINSDTGVLYALSSFDYEQFRDLQVKVMARDNGHPPLSSNVSLSLF 551
Query: 550 VDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGHNAWLSYHVLQA 609
V D+NDNAP +LYPAL DGS ++ P +AEPGYLVTKVVAVD DSG NAWLSY +L+A
Sbjct: 552 VLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKA 611
Query: 610 SEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEV 669
SEPGLFS+GL TGEVRTARAL DRDA++Q L+VAV+D GQPPLSAT TL + ADS+ +V
Sbjct: 612 SEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPQV 671
Query: 670 LPDITDRPDPSDLQ-AELQFYLVVALALISVLFLVAMILAIALRLRR 715
L D+ P++ + ++L YLVVA+A +S +FL +IL +ALRLRR
Sbjct: 672 LADLGSLESPANSETSDLTLYLVVAVAAVSCVFLAFVILLLALRLRR 718
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.131 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,876,589
Number of Sequences: 37866
Number of extensions: 1632521
Number of successful extensions: 10375
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 3048
Number of HSP's gapped (non-prelim): 726
length of query: 923
length of database: 18,247,518
effective HSP length: 112
effective length of query: 811
effective length of database: 14,006,526
effective search space: 11359292586
effective search space used: 11359292586
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.