Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 61636000

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|61636000 membrane-associated transporter protein isoform b
[Homo sapiens]
         (460 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|61636000 membrane-associated transporter protein isoform b [H...   942   0.0  
gi|61635915 membrane-associated transporter protein isoform a [H...   931   0.0  
gi|122937193 DNB5 [Homo sapiens]                                      217   2e-56
gi|122937259 solute carrier family 45, member 4 [Homo sapiens]        183   2e-46
gi|14916437 prostein [Homo sapiens]                                   175   9e-44
gi|194578891 abhydrolase domain-containing protein 1 [Homo sapiens]    32   0.93 
gi|4505835 polycystin 2 [Homo sapiens]                                 30   3.5  
gi|22035700 synaptogyrin 1 isoform 1c [Homo sapiens]                   30   4.6  
gi|6912736 transient receptor potential cation channel, subfamil...    29   7.8  
gi|209863032 transient receptor potential cation channel, subfam...    29   7.8  
gi|209863030 transient receptor potential cation channel, subfam...    29   7.8  
gi|209863028 transient receptor potential cation channel, subfam...    29   7.8  
gi|209863026 transient receptor potential cation channel, subfam...    29   7.8  
gi|209863024 transient receptor potential cation channel, subfam...    29   7.8  
gi|7706747 transient receptor potential cation channel, subfamil...    29   7.8  
gi|40786408 SFT2 domain containing 2 [Homo sapiens]                    29   7.8  

>gi|61636000 membrane-associated transporter protein isoform b [Homo
           sapiens]
          Length = 460

 Score =  942 bits (2436), Expect = 0.0
 Identities = 460/460 (100%), Positives = 460/460 (100%)

Query: 1   MGSNSGQAGRHIYKSLADDGPFDSVEPPKRPTSRLIMHSMAMFGREFCYAVEAAYVTPVL 60
           MGSNSGQAGRHIYKSLADDGPFDSVEPPKRPTSRLIMHSMAMFGREFCYAVEAAYVTPVL
Sbjct: 1   MGSNSGQAGRHIYKSLADDGPFDSVEPPKRPTSRLIMHSMAMFGREFCYAVEAAYVTPVL 60

Query: 61  LSVGLPSSLYSIVWFLSPILGFLLQPVVGSASDHCRSRWGRRRPYILTLGVMMLVGMALY 120
           LSVGLPSSLYSIVWFLSPILGFLLQPVVGSASDHCRSRWGRRRPYILTLGVMMLVGMALY
Sbjct: 61  LSVGLPSSLYSIVWFLSPILGFLLQPVVGSASDHCRSRWGRRRPYILTLGVMMLVGMALY 120

Query: 121 LNGATVVAALIANPRRKLVWAISVTMIGVVLFDFAADFIDGPIKAYLFDVCSHQDKEKGL 180
           LNGATVVAALIANPRRKLVWAISVTMIGVVLFDFAADFIDGPIKAYLFDVCSHQDKEKGL
Sbjct: 121 LNGATVVAALIANPRRKLVWAISVTMIGVVLFDFAADFIDGPIKAYLFDVCSHQDKEKGL 180

Query: 181 HYHALFTGFGGALGYLLGAIDWAHLELGRLLGTEFQVMFFFSALVLTLCFTVHLCSISEA 240
           HYHALFTGFGGALGYLLGAIDWAHLELGRLLGTEFQVMFFFSALVLTLCFTVHLCSISEA
Sbjct: 181 HYHALFTGFGGALGYLLGAIDWAHLELGRLLGTEFQVMFFFSALVLTLCFTVHLCSISEA 240

Query: 241 PLTEVAKGIPPQQTPQDPPLSSDGMYEYGSIEKVKNGYVNPELAMQGAKNKNHAEQTRRA 300
           PLTEVAKGIPPQQTPQDPPLSSDGMYEYGSIEKVKNGYVNPELAMQGAKNKNHAEQTRRA
Sbjct: 241 PLTEVAKGIPPQQTPQDPPLSSDGMYEYGSIEKVKNGYVNPELAMQGAKNKNHAEQTRRA 300

Query: 301 MTLKSLLRALVNMPPHYRYLCISHLIGWTAFLSNMLFFTDFMGQIVYRGDPYSAHNSTEF 360
           MTLKSLLRALVNMPPHYRYLCISHLIGWTAFLSNMLFFTDFMGQIVYRGDPYSAHNSTEF
Sbjct: 301 MTLKSLLRALVNMPPHYRYLCISHLIGWTAFLSNMLFFTDFMGQIVYRGDPYSAHNSTEF 360

Query: 361 LIYERGVEVGCWGFCINSVFSSLYSYFQKVLVSYIGLKGLYFTGYLLFGLGTGFIGLFPN 420
           LIYERGVEVGCWGFCINSVFSSLYSYFQKVLVSYIGLKGLYFTGYLLFGLGTGFIGLFPN
Sbjct: 361 LIYERGVEVGCWGFCINSVFSSLYSYFQKVLVSYIGLKGLYFTGYLLFGLGTGFIGLFPN 420

Query: 421 VYSTLVLCSLFGVMSSTLYTVPFNLITEYHREEEKEVCCH 460
           VYSTLVLCSLFGVMSSTLYTVPFNLITEYHREEEKEVCCH
Sbjct: 421 VYSTLVLCSLFGVMSSTLYTVPFNLITEYHREEEKEVCCH 460


>gi|61635915 membrane-associated transporter protein isoform a [Homo
           sapiens]
          Length = 530

 Score =  931 bits (2406), Expect = 0.0
 Identities = 456/456 (100%), Positives = 456/456 (100%)

Query: 1   MGSNSGQAGRHIYKSLADDGPFDSVEPPKRPTSRLIMHSMAMFGREFCYAVEAAYVTPVL 60
           MGSNSGQAGRHIYKSLADDGPFDSVEPPKRPTSRLIMHSMAMFGREFCYAVEAAYVTPVL
Sbjct: 1   MGSNSGQAGRHIYKSLADDGPFDSVEPPKRPTSRLIMHSMAMFGREFCYAVEAAYVTPVL 60

Query: 61  LSVGLPSSLYSIVWFLSPILGFLLQPVVGSASDHCRSRWGRRRPYILTLGVMMLVGMALY 120
           LSVGLPSSLYSIVWFLSPILGFLLQPVVGSASDHCRSRWGRRRPYILTLGVMMLVGMALY
Sbjct: 61  LSVGLPSSLYSIVWFLSPILGFLLQPVVGSASDHCRSRWGRRRPYILTLGVMMLVGMALY 120

Query: 121 LNGATVVAALIANPRRKLVWAISVTMIGVVLFDFAADFIDGPIKAYLFDVCSHQDKEKGL 180
           LNGATVVAALIANPRRKLVWAISVTMIGVVLFDFAADFIDGPIKAYLFDVCSHQDKEKGL
Sbjct: 121 LNGATVVAALIANPRRKLVWAISVTMIGVVLFDFAADFIDGPIKAYLFDVCSHQDKEKGL 180

Query: 181 HYHALFTGFGGALGYLLGAIDWAHLELGRLLGTEFQVMFFFSALVLTLCFTVHLCSISEA 240
           HYHALFTGFGGALGYLLGAIDWAHLELGRLLGTEFQVMFFFSALVLTLCFTVHLCSISEA
Sbjct: 181 HYHALFTGFGGALGYLLGAIDWAHLELGRLLGTEFQVMFFFSALVLTLCFTVHLCSISEA 240

Query: 241 PLTEVAKGIPPQQTPQDPPLSSDGMYEYGSIEKVKNGYVNPELAMQGAKNKNHAEQTRRA 300
           PLTEVAKGIPPQQTPQDPPLSSDGMYEYGSIEKVKNGYVNPELAMQGAKNKNHAEQTRRA
Sbjct: 241 PLTEVAKGIPPQQTPQDPPLSSDGMYEYGSIEKVKNGYVNPELAMQGAKNKNHAEQTRRA 300

Query: 301 MTLKSLLRALVNMPPHYRYLCISHLIGWTAFLSNMLFFTDFMGQIVYRGDPYSAHNSTEF 360
           MTLKSLLRALVNMPPHYRYLCISHLIGWTAFLSNMLFFTDFMGQIVYRGDPYSAHNSTEF
Sbjct: 301 MTLKSLLRALVNMPPHYRYLCISHLIGWTAFLSNMLFFTDFMGQIVYRGDPYSAHNSTEF 360

Query: 361 LIYERGVEVGCWGFCINSVFSSLYSYFQKVLVSYIGLKGLYFTGYLLFGLGTGFIGLFPN 420
           LIYERGVEVGCWGFCINSVFSSLYSYFQKVLVSYIGLKGLYFTGYLLFGLGTGFIGLFPN
Sbjct: 361 LIYERGVEVGCWGFCINSVFSSLYSYFQKVLVSYIGLKGLYFTGYLLFGLGTGFIGLFPN 420

Query: 421 VYSTLVLCSLFGVMSSTLYTVPFNLITEYHREEEKE 456
           VYSTLVLCSLFGVMSSTLYTVPFNLITEYHREEEKE
Sbjct: 421 VYSTLVLCSLFGVMSSTLYTVPFNLITEYHREEEKE 456


>gi|122937193 DNB5 [Homo sapiens]
          Length = 748

 Score =  217 bits (552), Expect = 2e-56
 Identities = 111/238 (46%), Positives = 151/238 (63%), Gaps = 6/238 (2%)

Query: 28  PKRPTSRLIMHSMAMFGREFCYAVEAAYVTPVLLSVGLPSSLYSIVWFLSPILGFLLQPV 87
           P+R    L+ +   +FG EF YA+E AYVTPVLL +GLP  LYS+VWF+SPILGFLLQP+
Sbjct: 80  PQRSFRELLFNGCILFGIEFSYAMETAYVTPVLLQMGLPDQLYSLVWFISPILGFLLQPL 139

Query: 88  VGSASDHCRSRWGRRRPYILTLGVMMLVGMALYLNGATVVAALIANPRRKLVWAISVTMI 147
           +G+ SD C SR+GRRRP+IL L +  L+G++L LNG  +  AL A+      W + +T+ 
Sbjct: 140 LGAWSDRCTSRFGRRRPFILVLAIGALLGLSLLLNGRDIGIAL-ADVTGNHKWGLLLTVC 198

Query: 148 GVVLFDFAADFIDGPIKAYLFDVCSHQDKEKGLHYHALFTGFGGALGYLLGAIDWAHLEL 207
           GVVL DF+AD  D P  AY+ DVCS  D+++GL+ HAL  G GG  GY++G I W     
Sbjct: 199 GVVLMDFSADSADNPSHAYMMDVCSPADQDRGLNIHALLAGLGGGFGYVVGGIHWDKTGF 258

Query: 208 GRLLGTEFQVMFFFSALVLTLCFTVHLCSISEAPL-----TEVAKGIPPQQTPQDPPL 260
           GR LG + +V++ F+A+ L++   + L SI E PL        A   P    P  PP+
Sbjct: 259 GRALGGQLRVIYLFTAVTLSVTTVLTLVSIPERPLRPPSEKRAAMKSPSLPLPPSPPV 316



 Score =  145 bits (366), Expect = 7e-35
 Identities = 62/161 (38%), Positives = 103/161 (63%)

Query: 294 AEQTRRAMTLKSLLRALVNMPPHYRYLCISHLIGWTAFLSNMLFFTDFMGQIVYRGDPYS 353
           +E+  + +++  L   + NMP   R LC++H +GW +F   +LF+TDFMG++V++GDP +
Sbjct: 500 SERAEQPLSVGRLCSTICNMPKALRTLCVNHFLGWLSFEGMLLFYTDFMGEVVFQGDPKA 559

Query: 354 AHNSTEFLIYERGVEVGCWGFCINSVFSSLYSYFQKVLVSYIGLKGLYFTGYLLFGLGTG 413
            H S  +  Y  GV +GCWG CI +  ++ YS   + L  ++ ++ LYF  YL FGLGTG
Sbjct: 560 PHTSEAYQKYNSGVTMGCWGMCIYAFSAAFYSAILEKLEEFLSVRTLYFIAYLAFGLGTG 619

Query: 414 FIGLFPNVYSTLVLCSLFGVMSSTLYTVPFNLITEYHREEE 454
              L  N+Y  L LC  +G++ STL T+P++L+ +Y++ ++
Sbjct: 620 LATLSRNLYVVLSLCITYGILFSTLCTLPYSLLCDYYQSKK 660


>gi|122937259 solute carrier family 45, member 4 [Homo sapiens]
          Length = 798

 Score =  183 bits (465), Expect = 2e-46
 Identities = 93/209 (44%), Positives = 132/209 (63%), Gaps = 7/209 (3%)

Query: 61  LSVGLPSSLYSIVWFLSPILGFLLQPVVGSASDHCRSRWGRRRPYILTLGVMMLVGMALY 120
           L  GLP   YS+ WFLSPILG +  P++GSASD C   WGRRRP+IL L V +L G+AL+
Sbjct: 27  LQKGLPEQYYSLTWFLSPILGLIFTPLIGSASDRCTLSWGRRRPFILALCVGVLFGVALF 86

Query: 121 LNGATVVAALIANPRRKLVWAISVTMIGVVLFDFAADFIDGPIKAYLFDVCSHQDKEKGL 180
           LNG+ +  AL   P R+ +  I +T++GVV+ DF+AD  +GPI+AYL DV   ++++  L
Sbjct: 87  LNGSAIGLALGDVPNRQPI-GIVLTVLGVVVLDFSADATEGPIRAYLLDVVDSEEQDMAL 145

Query: 181 HYHALFTGFGGALGYLLGAIDWAHLELGRLLGTEFQVMFFFSALVLTLCFTVHLCSISEA 240
           + HA   G GGA+GY+LG +DW    LG    T+ QV+FFF+A++ T+   +HL SI E 
Sbjct: 146 NIHAFSAGLGGAIGYVLGGLDWTQTFLGSWFRTQNQVLFFFAAIIFTVSVALHLFSIDEE 205

Query: 241 PLTEVAKGIPPQQTPQDPPLSSDGMYEYG 269
             +      P Q+   + P + DG   +G
Sbjct: 206 QYS------PQQERSAEEPGALDGGEPHG 228



 Score =  116 bits (291), Expect = 4e-26
 Identities = 55/159 (34%), Positives = 95/159 (59%), Gaps = 2/159 (1%)

Query: 294 AEQTRRAMTLKSLLRALVNMPPHYRYLCISHLIGWTAFLSNMLFFTDFMGQIVYRGDPYS 353
           +E+     T++ L  +++ MP     LC+ HL+ W + ++  +F+TDFMGQ+++ GDP +
Sbjct: 434 SEEGEGETTVRLLWLSMLKMPRELMRLCLCHLLTWFSVIAEAVFYTDFMGQVIFEGDPKA 493

Query: 354 AHNSTEFLIYERGVEVGCWGFCINSVFSSLYS-YFQKVLVSY-IGLKGLYFTGYLLFGLG 411
             NST +  Y  GV++GCWG  I +   ++ S   QK L +Y + ++ +Y  G L F +G
Sbjct: 494 PSNSTAWQAYNAGVKMGCWGLVIYAATGAICSALLQKYLDNYDLSVRVIYVLGTLGFSVG 553

Query: 412 TGFIGLFPNVYSTLVLCSLFGVMSSTLYTVPFNLITEYH 450
           T  + +FPNVY  +V  S  G++S ++   P+ L+ +YH
Sbjct: 554 TAVMAMFPNVYVAMVTISTMGIVSMSISYCPYALLGQYH 592


>gi|14916437 prostein [Homo sapiens]
          Length = 553

 Score =  175 bits (443), Expect = 9e-44
 Identities = 123/426 (28%), Positives = 192/426 (45%), Gaps = 37/426 (8%)

Query: 33  SRLIMHSMAMFGREFCYAVEAAYVTPVLLSVGLPSSLYSIVWFLSPILGFLLQPVVGSAS 92
           ++L++ ++  FG E C A    YV P+LL VG+     ++V  + P+LG +  P++GSAS
Sbjct: 16  AQLLLVNLLTFGLEVCLAAGITYVPPLLLEVGVEEKFMTMVLGIGPVLGLVCVPLLGSAS 75

Query: 93  DHCRSRWGRRRPYILTLGVMMLVGMALYLNGATVVAALIANPRRKLVWAISVTMIGVVLF 152
           DH R R+GRRRP+I  L + +L+ + L      +   L  +PR      +++ ++GV L 
Sbjct: 76  DHWRGRYGRRRPFIWALSLGILLSLFLIPRAGWLAGLLCPDPR---PLELALLILGVGLL 132

Query: 153 DFAADFIDGPIKAYLFDVCSHQDK-EKGLHYHALFTGFGGALGYLLGAIDWAHLELGRLL 211
           DF       P++A L D+    D   +    +A     GG LGYLL AIDW    L   L
Sbjct: 133 DFCGQVCFTPLEALLSDLFRDPDHCRQAYSVYAFMISLGGCLGYLLPAIDWDTSALAPYL 192

Query: 212 GTEFQVMFFFSALVLTLCFTVHLCSISEAPL--TEVAKGI-PPQQTPQDPPLSSDGMYEY 268
           GT+ + +F    L+   C    L    EA L  TE A+G+  P  +P   P  +      
Sbjct: 193 GTQEECLFGLLTLIFLTCVAATLLVAEEAALGPTEPAEGLSAPSLSPHCCPCRA------ 246

Query: 269 GSIEKVKNGYVNPELAMQGAKNKNHAEQTRRAMTLKSLLRALVNMPPHYRYLCISHLIGW 328
                         LA +                L  L +    MP   R L ++ L  W
Sbjct: 247 -------------RLAFRNL-----------GALLPRLHQLCCRMPRTLRRLFVAELCSW 282

Query: 329 TAFLSNMLFFTDFMGQIVYRGDPYSAHNSTEFLIYERGVEVGCWGFCINSVFSSLYSYFQ 388
            A ++  LF+TDF+G+ +Y+G P +   +     Y+ GV +G  G  +    S ++S   
Sbjct: 283 MALMTFTLFYTDFVGEGLYQGVPRAEPGTEARRHYDEGVRMGSLGLFLQCAISLVFSLVM 342

Query: 389 KVLVSYIGLKGLYFTGYLLFGLGTGFIGLFPNVYSTLVLCSLFGVMSSTLYTVPFNLITE 448
             LV   G + +Y      F +  G   L  +V       +L G   S L  +P+ L + 
Sbjct: 343 DRLVQRFGTRAVYLASVAAFPVAAGATCLSHSVAVVTASAALTGFTFSALQILPYTLASL 402

Query: 449 YHREEE 454
           YHRE++
Sbjct: 403 YHREKQ 408


>gi|194578891 abhydrolase domain-containing protein 1 [Homo sapiens]
          Length = 405

 Score = 32.3 bits (72), Expect = 0.93
 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 10/88 (11%)

Query: 132 ANPRRKLVWAISVTMIGVVLFDFAADFIDGPIKAYLFDVCSHQDKEKGLHYHALFTGFGG 191
           A+PR K+  AI +     VL+  AAD    P+ A       H       +   L T  GG
Sbjct: 308 ASPRTKID-AIRIP----VLYLSAADDPFSPVCALPIQAAQHSP-----YVALLITARGG 357

Query: 192 ALGYLLGAIDWAHLELGRLLGTEFQVMF 219
            +G+L G + W H  + RLL    + +F
Sbjct: 358 HIGFLEGLLPWQHWYMSRLLHQYAKAIF 385


>gi|4505835 polycystin 2 [Homo sapiens]
          Length = 968

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 6/114 (5%)

Query: 297 TRRAMTLKSLLRALVNMPPHYRYLCISHLIGWTAFLSNMLFFTDFMGQIVYRGDPYSAHN 356
           T R   LKS+LR LV    +  +L +  ++ +    SN+ ++T  M Q+ +   P S   
Sbjct: 211 TNREKYLKSVLRELVT---YLLFLIVLCILTYGMMSSNVYYYTRMMSQL-FLDTPVSKTE 266

Query: 357 STEFLIYERGVEVGCWGFCINSVFSSLYSYFQKVLVSYIGLKGLYFTGYLLFGL 410
            T F       +   W F   S+   LY   Q    +    +   F   LL G+
Sbjct: 267 KTNFKTLSSMEDF--WKFTEGSLLDGLYWKMQPSNQTEADNRSFIFYENLLLGV 318


>gi|22035700 synaptogyrin 1 isoform 1c [Homo sapiens]
          Length = 192

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 20/100 (20%)

Query: 326 IGWTAFLSNMLFFTDFMGQIVYRGDPYSAHNSTEFLIYER-------GVEVGCWGFCINS 378
           + W +     LF     G IV  G   SA    EF IY R       GV VG   F    
Sbjct: 25  VSWRSRPGCELFSIVVFGSIVNEGYLNSASEGEEFCIYNRNPNACSYGVAVGVLAFLTCL 84

Query: 379 VFSSLYSYF---------QKVLVSYIGLKG----LYFTGY 405
           ++ +L  YF         +K ++S IG+      L+F G+
Sbjct: 85  LYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWFVGF 124


>gi|6912736 transient receptor potential cation channel, subfamily
           C, member 5 [Homo sapiens]
          Length = 973

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 377 NSVFSSLYSYFQKVLVSYIGLKGLYFTGYLLFGLGTGFIGLFP----NVYSTLVLCSLFG 432
           N+ FS+L+   Q +  S  GL  LY T        T F+G       NV S +VL ++  
Sbjct: 562 NNAFSTLFETLQSLFWSVFGLLNLYVTNVKARHEFTEFVGATMFGTYNVISLVVLLNMLI 621

Query: 433 VMSSTLY 439
            M +  Y
Sbjct: 622 AMMNNSY 628


>gi|209863032 transient receptor potential cation channel, subfamily
           C, member 4 isoform zeta [Homo sapiens]
          Length = 804

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 7/87 (8%)

Query: 360 FLIYERGVEVGCWGFCI---NSVFSSLYSYFQKVLVSYIGLKGLYFTGYLLFGLGTGFIG 416
           +  YE    + C G      N+ FS+L+   Q +  S  GL  LY T        T F+G
Sbjct: 365 YFYYEETKGLTCKGIRCEKQNNAFSTLFETLQSLFWSIFGLINLYVTNVKAQHEFTEFVG 424

Query: 417 LFP----NVYSTLVLCSLFGVMSSTLY 439
                  NV S +VL ++   M +  Y
Sbjct: 425 ATMFGTYNVISLVVLLNMLIAMMNNSY 451


>gi|209863030 transient receptor potential cation channel, subfamily
           C, member 4 isoform delta [Homo sapiens]
          Length = 836

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 7/87 (8%)

Query: 360 FLIYERGVEVGCWGFCI---NSVFSSLYSYFQKVLVSYIGLKGLYFTGYLLFGLGTGFIG 416
           +  YE    + C G      N+ FS+L+   Q +  S  GL  LY T        T F+G
Sbjct: 538 YFYYEETKGLTCKGIRCEKQNNAFSTLFETLQSLFWSIFGLINLYVTNVKAQHEFTEFVG 597

Query: 417 LFP----NVYSTLVLCSLFGVMSSTLY 439
                  NV S +VL ++   M +  Y
Sbjct: 598 ATMFGTYNVISLVVLLNMLIAMMNNSY 624


>gi|209863028 transient receptor potential cation channel, subfamily
           C, member 4 isoform gamma [Homo sapiens]
          Length = 828

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 7/87 (8%)

Query: 360 FLIYERGVEVGCWGFCI---NSVFSSLYSYFQKVLVSYIGLKGLYFTGYLLFGLGTGFIG 416
           +  YE    + C G      N+ FS+L+   Q +  S  GL  LY T        T F+G
Sbjct: 538 YFYYEETKGLTCKGIRCEKQNNAFSTLFETLQSLFWSIFGLINLYVTNVKAQHEFTEFVG 597

Query: 417 LFP----NVYSTLVLCSLFGVMSSTLY 439
                  NV S +VL ++   M +  Y
Sbjct: 598 ATMFGTYNVISLVVLLNMLIAMMNNSY 624


>gi|209863026 transient receptor potential cation channel, subfamily
           C, member 4 isoform beta [Homo sapiens]
          Length = 893

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 7/87 (8%)

Query: 360 FLIYERGVEVGCWGFCI---NSVFSSLYSYFQKVLVSYIGLKGLYFTGYLLFGLGTGFIG 416
           +  YE    + C G      N+ FS+L+   Q +  S  GL  LY T        T F+G
Sbjct: 538 YFYYEETKGLTCKGIRCEKQNNAFSTLFETLQSLFWSIFGLINLYVTNVKAQHEFTEFVG 597

Query: 417 LFP----NVYSTLVLCSLFGVMSSTLY 439
                  NV S +VL ++   M +  Y
Sbjct: 598 ATMFGTYNVISLVVLLNMLIAMMNNSY 624


>gi|209863024 transient receptor potential cation channel, subfamily
           C, member 4 isoform epsilon [Homo sapiens]
          Length = 982

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 7/87 (8%)

Query: 360 FLIYERGVEVGCWGFCI---NSVFSSLYSYFQKVLVSYIGLKGLYFTGYLLFGLGTGFIG 416
           +  YE    + C G      N+ FS+L+   Q +  S  GL  LY T        T F+G
Sbjct: 538 YFYYEETKGLTCKGIRCEKQNNAFSTLFETLQSLFWSIFGLINLYVTNVKAQHEFTEFVG 597

Query: 417 LFP----NVYSTLVLCSLFGVMSSTLY 439
                  NV S +VL ++   M +  Y
Sbjct: 598 ATMFGTYNVISLVVLLNMLIAMMNNSY 624


>gi|7706747 transient receptor potential cation channel, subfamily
           C, member 4 isoform alpha [Homo sapiens]
          Length = 977

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 7/87 (8%)

Query: 360 FLIYERGVEVGCWGFCI---NSVFSSLYSYFQKVLVSYIGLKGLYFTGYLLFGLGTGFIG 416
           +  YE    + C G      N+ FS+L+   Q +  S  GL  LY T        T F+G
Sbjct: 538 YFYYEETKGLTCKGIRCEKQNNAFSTLFETLQSLFWSIFGLINLYVTNVKAQHEFTEFVG 597

Query: 417 LFP----NVYSTLVLCSLFGVMSSTLY 439
                  NV S +VL ++   M +  Y
Sbjct: 598 ATMFGTYNVISLVVLLNMLIAMMNNSY 624


>gi|40786408 SFT2 domain containing 2 [Homo sapiens]
          Length = 160

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 13/64 (20%)

Query: 178 KGLHYHALFTGFG-----GALGYLLGAIDWAHLELGRLLGTEFQVMFFFSALVLTLCFTV 232
           KGLH  A+F  FG     G+  +L+G +     +L R+    F+     + +++ LCF +
Sbjct: 60  KGLHLFAVFYTFGNIASIGSTIFLMGPVK----QLKRM----FEPTRLIATIMVLLCFAL 111

Query: 233 HLCS 236
            LCS
Sbjct: 112 TLCS 115


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.326    0.141    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,836,246
Number of Sequences: 37866
Number of extensions: 786074
Number of successful extensions: 2532
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2516
Number of HSP's gapped (non-prelim): 20
length of query: 460
length of database: 18,247,518
effective HSP length: 106
effective length of query: 354
effective length of database: 14,233,722
effective search space: 5038737588
effective search space used: 5038737588
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 64 (29.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press