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Search of human proteins with 60593056
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|60593056 hypothetical protein LOC283948 [Homo sapiens]
(123 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|60593056 hypothetical protein LOC283948 [Homo sapiens] 258 6e-70
gi|153791514 tripartite motif-containing 32 [Homo sapiens] 72 8e-14
gi|153792582 tripartite motif-containing 32 [Homo sapiens] 72 8e-14
gi|84993742 tripartite motif-containing 71 [Homo sapiens] 49 7e-07
gi|32454739 tripartite motif-containing 3 [Homo sapiens] 47 3e-06
gi|32454737 tripartite motif-containing 3 [Homo sapiens] 47 3e-06
gi|194248081 tripartite motif-containing 2 isoform 2 [Homo sapiens] 46 6e-06
gi|194248079 tripartite motif-containing 2 isoform 1 [Homo sapiens] 46 6e-06
gi|40255283 NHL repeat containing 1 [Homo sapiens] 40 4e-04
gi|239751049 PREDICTED: similar to ATPase, Ca++ transporting, fa... 32 0.093
gi|10835220 ATPase, Ca++ transporting, fast twitch 1 isoform b [... 32 0.093
gi|27886529 ATPase, Ca++ transporting, fast twitch 1 isoform a [... 32 0.093
gi|39995107 Fas-activated serine/threonine kinase isoform 4 [Hom... 30 0.35
gi|24308201 chromosome 20 open reading frame 3 [Homo sapiens] 30 0.46
gi|216548382 WD repeat domain 47 isoform 3 [Homo sapiens] 30 0.60
gi|216548378 WD repeat domain 47 isoform 1 [Homo sapiens] 30 0.60
gi|216548347 WD repeat domain 47 isoform 2 [Homo sapiens] 30 0.60
gi|253970412 G-2 and S-phase expressed 1 [Homo sapiens] 29 0.79
gi|5174447 guanine nucleotide binding protein (G protein), beta ... 29 0.79
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 29 1.0
gi|91208437 GEM interacting protein [Homo sapiens] 28 1.3
gi|115430231 REC8 homolog [Homo sapiens] 28 1.8
gi|115430229 REC8 homolog [Homo sapiens] 28 1.8
gi|6631102 protocadherin 8 isoform 1 precursor [Homo sapiens] 27 3.0
gi|163914373 solute carrier family 8 (sodium/calcium exchanger),... 27 3.9
gi|157412249 RUN and SH3 domain containing 1 isoform c [Homo sap... 27 5.1
gi|157412247 RUN and SH3 domain containing 1 isoform b [Homo sap... 27 5.1
gi|157412245 RUN and SH3 domain containing 1 isoform a [Homo sap... 27 5.1
gi|42476123 RUN and SH3 domain containing 1 isoform d [Homo sapi... 27 5.1
gi|116235485 delta-notch-like EGF repeat-containing transmembran... 27 5.1
>gi|60593056 hypothetical protein LOC283948 [Homo sapiens]
Length = 123
Score = 258 bits (660), Expect = 6e-70
Identities = 123/123 (100%), Positives = 123/123 (100%)
Query: 1 MLGLEGPCWVGPGPDGGLAVSEEFGDVRLFGSARQPLGSLGGWTGHTFGCPAGICSNSEG 60
MLGLEGPCWVGPGPDGGLAVSEEFGDVRLFGSARQPLGSLGGWTGHTFGCPAGICSNSEG
Sbjct: 1 MLGLEGPCWVGPGPDGGLAVSEEFGDVRLFGSARQPLGSLGGWTGHTFGCPAGICSNSEG 60
Query: 61 NVIVADEQRRQVTLFPRAGPPICLVSEGLGQPLGVACAPQGQLLVADAKDNSIKVYQGLK 120
NVIVADEQRRQVTLFPRAGPPICLVSEGLGQPLGVACAPQGQLLVADAKDNSIKVYQGLK
Sbjct: 61 NVIVADEQRRQVTLFPRAGPPICLVSEGLGQPLGVACAPQGQLLVADAKDNSIKVYQGLK 120
Query: 121 ELA 123
ELA
Sbjct: 121 ELA 123
>gi|153791514 tripartite motif-containing 32 [Homo sapiens]
Length = 653
Score = 72.4 bits (176), Expect = 8e-14
Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 6/87 (6%)
Query: 36 PLGSLGGWTGHTFG------CPAGICSNSEGNVIVADEQRRQVTLFPRAGPPICLVSEGL 89
P G LG H F C AG+C ++ G++IVAD R+++ FP+ G L+ EGL
Sbjct: 557 PDGQLGRQISHFFSENEDFRCIAGMCVDARGDLIVADSSRKEILHFPKGGGYSVLIREGL 616
Query: 90 GQPLGVACAPQGQLLVADAKDNSIKVY 116
P+G+A P+GQLLV D D+ IK+Y
Sbjct: 617 TCPVGIALTPKGQLLVLDCWDHCIKIY 643
Score = 37.7 bits (86), Expect = 0.002
Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 16/91 (17%)
Query: 42 GWTGHTFGCPAGICSNSEGNVIVADEQRRQVTLFPRAG-------PPICLVSEGLG---- 90
G T F P + S+G V+VAD ++ +F R G P + S L
Sbjct: 365 GSTPGMFNLPVSLYVTSQGEVLVADRGNYRIQVFTRKGFLKEIRRSPSGIDSFVLSFLGA 424
Query: 91 -----QPLGVACAPQGQLLVADAKDNSIKVY 116
PL VA QG + V D+ DNS+KVY
Sbjct: 425 DLPNLTPLSVAMNCQGLIGVTDSYDNSLKVY 455
Score = 31.2 bits (69), Expect = 0.21
Identities = 14/63 (22%), Positives = 26/63 (41%)
Query: 51 PAGICSNSEGNVIVADEQRRQVTLFPRAGPPICLVSEGLGQPLGVACAPQGQLLVADAKD 110
P + N +G + V D + ++ G + L +P G+ P GQ +V D +
Sbjct: 431 PLSVAMNCQGLIGVTDSYDNSLKVYTLDGHCVACHRSQLSKPWGITALPSGQFVVTDVEG 490
Query: 111 NSI 113
+
Sbjct: 491 GKL 493
>gi|153792582 tripartite motif-containing 32 [Homo sapiens]
Length = 653
Score = 72.4 bits (176), Expect = 8e-14
Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 6/87 (6%)
Query: 36 PLGSLGGWTGHTFG------CPAGICSNSEGNVIVADEQRRQVTLFPRAGPPICLVSEGL 89
P G LG H F C AG+C ++ G++IVAD R+++ FP+ G L+ EGL
Sbjct: 557 PDGQLGRQISHFFSENEDFRCIAGMCVDARGDLIVADSSRKEILHFPKGGGYSVLIREGL 616
Query: 90 GQPLGVACAPQGQLLVADAKDNSIKVY 116
P+G+A P+GQLLV D D+ IK+Y
Sbjct: 617 TCPVGIALTPKGQLLVLDCWDHCIKIY 643
Score = 37.7 bits (86), Expect = 0.002
Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 16/91 (17%)
Query: 42 GWTGHTFGCPAGICSNSEGNVIVADEQRRQVTLFPRAG-------PPICLVSEGLG---- 90
G T F P + S+G V+VAD ++ +F R G P + S L
Sbjct: 365 GSTPGMFNLPVSLYVTSQGEVLVADRGNYRIQVFTRKGFLKEIRRSPSGIDSFVLSFLGA 424
Query: 91 -----QPLGVACAPQGQLLVADAKDNSIKVY 116
PL VA QG + V D+ DNS+KVY
Sbjct: 425 DLPNLTPLSVAMNCQGLIGVTDSYDNSLKVY 455
Score = 31.2 bits (69), Expect = 0.21
Identities = 14/63 (22%), Positives = 26/63 (41%)
Query: 51 PAGICSNSEGNVIVADEQRRQVTLFPRAGPPICLVSEGLGQPLGVACAPQGQLLVADAKD 110
P + N +G + V D + ++ G + L +P G+ P GQ +V D +
Sbjct: 431 PLSVAMNCQGLIGVTDSYDNSLKVYTLDGHCVACHRSQLSKPWGITALPSGQFVVTDVEG 490
Query: 111 NSI 113
+
Sbjct: 491 GKL 493
>gi|84993742 tripartite motif-containing 71 [Homo sapiens]
Length = 868
Score = 49.3 bits (116), Expect = 7e-07
Identities = 44/133 (33%), Positives = 59/133 (44%), Gaps = 21/133 (15%)
Query: 3 GLEGPCWVGPGPDGGLAVSEE-------FGDVRLF------GSARQPLGSLGGWTGHTFG 49
G EG W G+A + E F + RL SAR LGS G G F
Sbjct: 738 GFEGALWKHFDSPRGVAFNHEGHLVVTDFNNHRLLVIHPDCQSARF-LGSEGTGNGQ-FL 795
Query: 50 CPAGICSNSEGNVIVADEQRRQVTLFPRAGPPIC---LVSEGLGQ---PLGVACAPQGQL 103
P G+ + EG +IVAD + +V +F G +C G GQ P G+A P G +
Sbjct: 796 RPQGVAVDQEGRIIVADSRNHRVQMFESNGSFLCKFGAQGSGFGQMDRPSGIAITPDGMI 855
Query: 104 LVADAKDNSIKVY 116
+V D +N I V+
Sbjct: 856 VVVDFGNNRILVF 868
Score = 44.3 bits (103), Expect = 2e-05
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 9/120 (7%)
Query: 7 PCWVGPGPDGGLAVSEEFGD-VRLFGSARQPLGSLG--GWTGHTFGCPAGICSNSEGNVI 63
P V +G + VS+ ++LFG L G G F P G+ N EG+++
Sbjct: 703 PWDVAVNSEGKILVSDTRNHRIQLFGPDGVFLNKYGFEGALWKHFDSPRGVAFNHEGHLV 762
Query: 64 VAD-EQRRQVTLFPRAGPPICLVSEGLG-----QPLGVACAPQGQLLVADAKDNSIKVYQ 117
V D R + + P L SEG G +P GVA +G+++VAD++++ +++++
Sbjct: 763 VTDFNNHRLLVIHPDCQSARFLGSEGTGNGQFLRPQGVAVDQEGRIIVADSRNHRVQMFE 822
Score = 38.9 bits (89), Expect = 0.001
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 31 GSARQPLGSLGGWTGHTFGCPAGICSNSEGNVIVADEQRRQVTLFPRAGPPICLVSE--- 87
G+ G+LG G F PAG+ ++ ++VAD+ ++ +F G + E
Sbjct: 637 GAFHHKFGTLGSRPGQ-FDRPAGVACDASRRIVVADKDNHRIQIFTFEGQFLLKFGEKGT 695
Query: 88 ---GLGQPLGVACAPQGQLLVADAKDNSIKVY 116
P VA +G++LV+D +++ I+++
Sbjct: 696 KNGQFNYPWDVAVNSEGKILVSDTRNHRIQLF 727
Score = 35.0 bits (79), Expect = 0.014
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 51 PAGICSNSEGNVIVADEQRRQVTLFPRAGP---PICLVSEGLGQ---PLGVACAPQGQLL 104
P G+ + EG +IVAD ++ +F G + GQ P GVAC +++
Sbjct: 609 PWGVSVDKEGYIIVADRSNNRIQVFKPCGAFHHKFGTLGSRPGQFDRPAGVACDASRRIV 668
Query: 105 VADAKDNSIKVY 116
VAD ++ I+++
Sbjct: 669 VADKDNHRIQIF 680
Score = 32.0 bits (71), Expect = 0.12
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 12/77 (15%)
Query: 48 FGCPAGICSNSEGNVIVADEQRRQVTLFPRAGPPICLVS----EG-----LGQPLGVACA 98
F P + NSEG ++V+D + ++ LF GP ++ EG P GVA
Sbjct: 700 FNYPWDVAVNSEGKILVSDTRNHRIQLF---GPDGVFLNKYGFEGALWKHFDSPRGVAFN 756
Query: 99 PQGQLLVADAKDNSIKV 115
+G L+V D ++ + V
Sbjct: 757 HEGHLVVTDFNNHRLLV 773
Score = 27.3 bits (59), Expect = 3.0
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 80 PPICLVSEG-----LGQPLGVACAPQGQLLVADAKDNSIKVYQ 117
P + SEG L +P GV+ +G ++VAD +N I+V++
Sbjct: 592 PGLSFGSEGDSDGKLCRPWGVSVDKEGYIIVADRSNNRIQVFK 634
>gi|32454739 tripartite motif-containing 3 [Homo sapiens]
Length = 744
Score = 47.4 bits (111), Expect = 3e-06
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 38 GSLGGWTGHTFGCPAGICSNSEGNVIVADEQRRQVTLFPRAGPPICLV---SEGLGQPLG 94
GS G G F P G+ +S GN+IVAD ++ +F +G + + +E L P G
Sbjct: 660 GSHGEGNGQ-FNAPTGVAVDSNGNIIVADWGNSRIQVFDSSGSFLSYINTSAEPLYGPQG 718
Query: 95 VACAPQGQLLVADAKDNSIKVYQGLK 120
+A G ++VADA ++ K Y+ L+
Sbjct: 719 LALTSDGHVVVADAGNHCFKAYRYLQ 744
Score = 37.4 bits (85), Expect = 0.003
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 51 PAGICSNSEGNVIVADEQRRQVTLFPRAGPPICLVSEG-LGQPLGVACAPQGQLLVADAK 109
P G+ ++ G++IVAD R V++F G + G L P GVA G ++V D K
Sbjct: 536 PTGVAVDTNGDIIVADYDNRWVSIFSPEGKFKTKIGAGRLMGPKGVAVDRNGHIIVVDNK 595
Query: 110 DNSIKVYQ 117
+ +Q
Sbjct: 596 SCCVFTFQ 603
Score = 30.0 bits (66), Expect = 0.46
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 53 GICSNSEGNVIVADEQRRQVTLFPRAGP-----PICLVSEG-LGQPLGVACAPQGQLLVA 106
G+ + S G ++VAD + + +F G + S G L +P GVA G ++VA
Sbjct: 491 GVSAASSGRIVVADSNNQCIQVFSNEGQFKFRFGVRGRSPGQLQRPTGVAVDTNGDIIVA 550
Query: 107 DAKDNSIKVY 116
D + + ++
Sbjct: 551 DYDNRWVSIF 560
Score = 25.8 bits (55), Expect = 8.7
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 51 PAGICSNSEGNVIVADEQRRQVTLFPRAGPPIC------LVSEGLGQPLGVACAPQGQLL 104
P G+ + G++IV D + V F G + P VA + +++
Sbjct: 578 PKGVAVDRNGHIIVVDNKSCCVFTFQPNGKLVGRFGGRGATDRHFAGPHFVAVNNKNEIV 637
Query: 105 VADAKDNSIKVY 116
V D ++S+KVY
Sbjct: 638 VTDFHNHSVKVY 649
>gi|32454737 tripartite motif-containing 3 [Homo sapiens]
Length = 744
Score = 47.4 bits (111), Expect = 3e-06
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 38 GSLGGWTGHTFGCPAGICSNSEGNVIVADEQRRQVTLFPRAGPPICLV---SEGLGQPLG 94
GS G G F P G+ +S GN+IVAD ++ +F +G + + +E L P G
Sbjct: 660 GSHGEGNGQ-FNAPTGVAVDSNGNIIVADWGNSRIQVFDSSGSFLSYINTSAEPLYGPQG 718
Query: 95 VACAPQGQLLVADAKDNSIKVYQGLK 120
+A G ++VADA ++ K Y+ L+
Sbjct: 719 LALTSDGHVVVADAGNHCFKAYRYLQ 744
Score = 37.4 bits (85), Expect = 0.003
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 51 PAGICSNSEGNVIVADEQRRQVTLFPRAGPPICLVSEG-LGQPLGVACAPQGQLLVADAK 109
P G+ ++ G++IVAD R V++F G + G L P GVA G ++V D K
Sbjct: 536 PTGVAVDTNGDIIVADYDNRWVSIFSPEGKFKTKIGAGRLMGPKGVAVDRNGHIIVVDNK 595
Query: 110 DNSIKVYQ 117
+ +Q
Sbjct: 596 SCCVFTFQ 603
Score = 30.0 bits (66), Expect = 0.46
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 53 GICSNSEGNVIVADEQRRQVTLFPRAGP-----PICLVSEG-LGQPLGVACAPQGQLLVA 106
G+ + S G ++VAD + + +F G + S G L +P GVA G ++VA
Sbjct: 491 GVSAASSGRIVVADSNNQCIQVFSNEGQFKFRFGVRGRSPGQLQRPTGVAVDTNGDIIVA 550
Query: 107 DAKDNSIKVY 116
D + + ++
Sbjct: 551 DYDNRWVSIF 560
Score = 25.8 bits (55), Expect = 8.7
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 51 PAGICSNSEGNVIVADEQRRQVTLFPRAGPPIC------LVSEGLGQPLGVACAPQGQLL 104
P G+ + G++IV D + V F G + P VA + +++
Sbjct: 578 PKGVAVDRNGHIIVVDNKSCCVFTFQPNGKLVGRFGGRGATDRHFAGPHFVAVNNKNEIV 637
Query: 105 VADAKDNSIKVY 116
V D ++S+KVY
Sbjct: 638 VTDFHNHSVKVY 649
>gi|194248081 tripartite motif-containing 2 isoform 2 [Homo sapiens]
Length = 744
Score = 46.2 bits (108), Expect = 6e-06
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 38 GSLGGWTGHTFGCPAGICSNSEGNVIVADEQRRQVTLFPRAGPPICLV---SEGLGQPLG 94
GS G G F P G+ +S GN+IVAD ++ +F +G + + ++ L P G
Sbjct: 660 GSNGEGNGQ-FNAPTGVAVDSNGNIIVADWGNSRIQVFDGSGSFLSYINTSADPLYGPQG 718
Query: 95 VACAPQGQLLVADAKDNSIKVYQGLK 120
+A G ++VAD+ ++ KVY+ L+
Sbjct: 719 LALTSDGHVVVADSGNHCFKVYRYLQ 744
Score = 34.7 bits (78), Expect = 0.019
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 51 PAGICSNSEGNVIVADEQRRQVTLFPRAGPPICLVSEG-LGQPLGVACAPQGQLLVADAK 109
P G+ + G++I+AD + V++F G + G L P GV+ G ++V D K
Sbjct: 536 PTGVAVHPSGDIIIADYDNKWVSIFSSDGKFKTKIGSGKLMGPKGVSVDRNGHIIVVDNK 595
Query: 110 DNSIKVYQ 117
+ ++Q
Sbjct: 596 ACCVFIFQ 603
Score = 33.1 bits (74), Expect = 0.054
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 53 GICSNSEGNVIVADEQRRQVTLFPRAGP-----PICLVSEG-LGQPLGVACAPQGQLLVA 106
G+ +++ G +++AD + V +F G I S G L +P GVA P G +++A
Sbjct: 491 GVAASTNGKILIADSNNQCVQIFSNDGQFKSRFGIRGRSPGQLQRPTGVAVHPSGDIIIA 550
Query: 107 DAKDNSIKVY 116
D + + ++
Sbjct: 551 DYDNKWVSIF 560
Score = 28.5 bits (62), Expect = 1.3
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 4 LEGPCWVGPGPDGGLAVSEEFGD-VRLFGSARQPLGSLGGWTGHTFGCPAGICSNSEGNV 62
L+ P V P G + +++ V +F S + +G +G G P G+ + G++
Sbjct: 533 LQRPTGVAVHPSGDIIIADYDNKWVSIFSSDGKFKTKIG--SGKLMG-PKGVSVDRNGHI 589
Query: 63 IVADEQRRQVTLFPRAGPPIC-LVSEGLGQ-----PLGVACAPQGQLLVADAKDNSIKVY 116
IV D + V +F G + S G G P A ++++ D ++S+KV+
Sbjct: 590 IVVDNKACCVFIFQPNGKIVTRFGSRGNGDRQFAGPHFAAVNSNNEIIITDFHNHSVKVF 649
>gi|194248079 tripartite motif-containing 2 isoform 1 [Homo sapiens]
Length = 771
Score = 46.2 bits (108), Expect = 6e-06
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 38 GSLGGWTGHTFGCPAGICSNSEGNVIVADEQRRQVTLFPRAGPPICLV---SEGLGQPLG 94
GS G G F P G+ +S GN+IVAD ++ +F +G + + ++ L P G
Sbjct: 687 GSNGEGNGQ-FNAPTGVAVDSNGNIIVADWGNSRIQVFDGSGSFLSYINTSADPLYGPQG 745
Query: 95 VACAPQGQLLVADAKDNSIKVYQGLK 120
+A G ++VAD+ ++ KVY+ L+
Sbjct: 746 LALTSDGHVVVADSGNHCFKVYRYLQ 771
Score = 34.7 bits (78), Expect = 0.019
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 51 PAGICSNSEGNVIVADEQRRQVTLFPRAGPPICLVSEG-LGQPLGVACAPQGQLLVADAK 109
P G+ + G++I+AD + V++F G + G L P GV+ G ++V D K
Sbjct: 563 PTGVAVHPSGDIIIADYDNKWVSIFSSDGKFKTKIGSGKLMGPKGVSVDRNGHIIVVDNK 622
Query: 110 DNSIKVYQ 117
+ ++Q
Sbjct: 623 ACCVFIFQ 630
Score = 33.1 bits (74), Expect = 0.054
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 53 GICSNSEGNVIVADEQRRQVTLFPRAGP-----PICLVSEG-LGQPLGVACAPQGQLLVA 106
G+ +++ G +++AD + V +F G I S G L +P GVA P G +++A
Sbjct: 518 GVAASTNGKILIADSNNQCVQIFSNDGQFKSRFGIRGRSPGQLQRPTGVAVHPSGDIIIA 577
Query: 107 DAKDNSIKVY 116
D + + ++
Sbjct: 578 DYDNKWVSIF 587
Score = 28.5 bits (62), Expect = 1.3
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 4 LEGPCWVGPGPDGGLAVSEEFGD-VRLFGSARQPLGSLGGWTGHTFGCPAGICSNSEGNV 62
L+ P V P G + +++ V +F S + +G +G G P G+ + G++
Sbjct: 560 LQRPTGVAVHPSGDIIIADYDNKWVSIFSSDGKFKTKIG--SGKLMG-PKGVSVDRNGHI 616
Query: 63 IVADEQRRQVTLFPRAGPPIC-LVSEGLGQ-----PLGVACAPQGQLLVADAKDNSIKVY 116
IV D + V +F G + S G G P A ++++ D ++S+KV+
Sbjct: 617 IVVDNKACCVFIFQPNGKIVTRFGSRGNGDRQFAGPHFAAVNSNNEIIITDFHNHSVKVF 676
>gi|40255283 NHL repeat containing 1 [Homo sapiens]
Length = 395
Score = 40.0 bits (92), Expect = 4e-04
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 27 VRLFGSARQPLGSLGGWTGHTFGCPAGICSNS-----EGNVIVADEQRRQVTLF--PRAG 79
V++F S+ Q +G + + G + P+ I +++ +GNVIVAD + P
Sbjct: 294 VKVFSSSMQLVGQVDTF-GLSLYFPSKITASAVTFDHQGNVIVADTSGPAILCLGKPEEF 352
Query: 80 P-PICLVSEGLGQPLGVACAPQGQLLVADAKDNSIKVYQ 117
P P +V+ GL P+ + + LLV D +SIKVY+
Sbjct: 353 PVPKPMVTHGLSHPVALTFTKENSLLVLDTASHSIKVYK 391
Score = 35.4 bits (80), Expect = 0.011
Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 12/109 (11%)
Query: 17 GLAVSEEFGDVRLF--GSARQPLGSLGGWTGHTFG----------CPAGICSNSEGNVIV 64
GLA+ + G V + G R + GG H FG P + ++ +V+V
Sbjct: 131 GLALCPKTGRVVVVHDGRRRVKIFDSGGGCAHQFGEKGDAAQDIRYPVDVTITNDCHVVV 190
Query: 65 ADEQRRQVTLFPRAGPPICLVSEGLGQPLGVACAPQGQLLVADAKDNSI 113
D R + +F G ++ P GV PQ ++V DA+ S+
Sbjct: 191 TDAGDRSIKVFDFFGQIKLVIGGQFSLPWGVETTPQNGIVVTDAEAGSL 239
>gi|239751049 PREDICTED: similar to ATPase, Ca++ transporting, fast
twitch 1 [Homo sapiens]
Length = 879
Score = 32.3 bits (72), Expect = 0.093
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 47 TFGCPAGICSNSEGNVIVADEQRRQVTLFPRAGPPICLVSEGLGQPLGVACAPQGQLLVA 106
T GC + ICS+ G + ++ + + ICL++E G AP+G++L
Sbjct: 596 TLGCTSVICSDKTGTLTTNQMSVCKMFIIDKVDGDICLLNE--FSITGSTYAPEGEVLKN 653
Query: 107 DAKDNSIKVYQGLKELA 123
D K Y GL ELA
Sbjct: 654 D-KPVRPGQYDGLVELA 669
>gi|10835220 ATPase, Ca++ transporting, fast twitch 1 isoform b
[Homo sapiens]
Length = 994
Score = 32.3 bits (72), Expect = 0.093
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 47 TFGCPAGICSNSEGNVIVADEQRRQVTLFPRAGPPICLVSEGLGQPLGVACAPQGQLLVA 106
T GC + ICS+ G + ++ + + ICL++E G AP+G++L
Sbjct: 341 TLGCTSVICSDKTGTLTTNQMSVCKMFIIDKVDGDICLLNE--FSITGSTYAPEGEVLKN 398
Query: 107 DAKDNSIKVYQGLKELA 123
D K Y GL ELA
Sbjct: 399 D-KPVRPGQYDGLVELA 414
>gi|27886529 ATPase, Ca++ transporting, fast twitch 1 isoform a
[Homo sapiens]
Length = 1001
Score = 32.3 bits (72), Expect = 0.093
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 47 TFGCPAGICSNSEGNVIVADEQRRQVTLFPRAGPPICLVSEGLGQPLGVACAPQGQLLVA 106
T GC + ICS+ G + ++ + + ICL++E G AP+G++L
Sbjct: 341 TLGCTSVICSDKTGTLTTNQMSVCKMFIIDKVDGDICLLNE--FSITGSTYAPEGEVLKN 398
Query: 107 DAKDNSIKVYQGLKELA 123
D K Y GL ELA
Sbjct: 399 D-KPVRPGQYDGLVELA 414
>gi|39995107 Fas-activated serine/threonine kinase isoform 4 [Homo
sapiens]
Length = 408
Score = 30.4 bits (67), Expect = 0.35
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 45 GHTFGCPAGICSNSEGNVIVADEQRRQVTLFPRAGPPI-CLVSEGLGQPLGVAC 97
G T P C S+G ++ A EQ R++ L P+ PP+ L+ G G ++C
Sbjct: 18 GATCAGPGESCFPSDGPLVCALEQERRLRLPPKPPPPLQPLLRGGQGLEAALSC 71
>gi|24308201 chromosome 20 open reading frame 3 [Homo sapiens]
Length = 416
Score = 30.0 bits (66), Expect = 0.46
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 13/46 (28%)
Query: 77 RAGPPICLVSEGLGQPLGVACAPQGQLLVADAKDNSIKVYQGLKEL 122
R P+C G+PLG+ P G L VADA Y+GL E+
Sbjct: 143 RDDEPVC------GRPLGIRAGPNGTLFVADA-------YKGLFEV 175
>gi|216548382 WD repeat domain 47 isoform 3 [Homo sapiens]
Length = 919
Score = 29.6 bits (65), Expect = 0.60
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 13/114 (11%)
Query: 11 GPGPDGGLAVSEEFGDVRLFGS---ARQPLGSLGGWTGHTFGCPAGICSNSEGNVIVADE 67
GP G + +S GD ++ + Q L +L G TGH G +I +
Sbjct: 719 GPESGGAILISAGAGDCNIYTTDCQRGQGLHALSGHTGHILA-----LYTWSGWMIASGS 773
Query: 68 QRRQVTLFPRAGPPICLV----SEGLGQPL-GVACAPQGQLLVADAKDNSIKVY 116
Q + V + P V G G + VA P G+LL +D+S +Y
Sbjct: 774 QDKTVRFWDLRVPSCVRVVGTTFHGTGSAVASVAVDPSGRLLATGQEDSSCMLY 827
>gi|216548378 WD repeat domain 47 isoform 1 [Homo sapiens]
Length = 927
Score = 29.6 bits (65), Expect = 0.60
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 13/114 (11%)
Query: 11 GPGPDGGLAVSEEFGDVRLFGS---ARQPLGSLGGWTGHTFGCPAGICSNSEGNVIVADE 67
GP G + +S GD ++ + Q L +L G TGH G +I +
Sbjct: 727 GPESGGAILISAGAGDCNIYTTDCQRGQGLHALSGHTGHILA-----LYTWSGWMIASGS 781
Query: 68 QRRQVTLFPRAGPPICLV----SEGLGQPL-GVACAPQGQLLVADAKDNSIKVY 116
Q + V + P V G G + VA P G+LL +D+S +Y
Sbjct: 782 QDKTVRFWDLRVPSCVRVVGTTFHGTGSAVASVAVDPSGRLLATGQEDSSCMLY 835
>gi|216548347 WD repeat domain 47 isoform 2 [Homo sapiens]
Length = 920
Score = 29.6 bits (65), Expect = 0.60
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 13/114 (11%)
Query: 11 GPGPDGGLAVSEEFGDVRLFGS---ARQPLGSLGGWTGHTFGCPAGICSNSEGNVIVADE 67
GP G + +S GD ++ + Q L +L G TGH G +I +
Sbjct: 720 GPESGGAILISAGAGDCNIYTTDCQRGQGLHALSGHTGHILA-----LYTWSGWMIASGS 774
Query: 68 QRRQVTLFPRAGPPICLV----SEGLGQPL-GVACAPQGQLLVADAKDNSIKVY 116
Q + V + P V G G + VA P G+LL +D+S +Y
Sbjct: 775 QDKTVRFWDLRVPSCVRVVGTTFHGTGSAVASVAVDPSGRLLATGQEDSSCMLY 828
>gi|253970412 G-2 and S-phase expressed 1 [Homo sapiens]
Length = 739
Score = 29.3 bits (64), Expect = 0.79
Identities = 32/106 (30%), Positives = 42/106 (39%), Gaps = 15/106 (14%)
Query: 6 GPCWVGPG-----PDGGLAVSEEFGDVRLFGSARQPLGSLG--GWTGHTFGCPA------ 52
GP W G P G A S EF + ++ +PL ++ G G PA
Sbjct: 333 GPVWSGASSACTSPAVGKAKSSEFASIP--ANSSRPLSNISKSGRMGPAMLRPALPAGPV 390
Query: 53 GICSNSEGNVIVADEQRRQVTLFPRAGPPICLVSEGLGQPLGVACA 98
G S V V++ Q+T P A P EG GQ L +CA
Sbjct: 391 GASSWQAKRVDVSELAAEQLTAPPSASPTQPQTPEGGGQWLNSSCA 436
>gi|5174447 guanine nucleotide binding protein (G protein), beta
polypeptide 2-like 1 [Homo sapiens]
Length = 317
Score = 29.3 bits (64), Expect = 0.79
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 59 EGNVIVADEQRRQVTLFPRAGPPICLVSEGLGQPLGVACAPQGQLLVADAKDNSIKVYQ 117
EG +IV + ++ ++ +A PP C +A + GQ L A DN ++V+Q
Sbjct: 262 EGKIIVDELKQEVISTSSKAEPPQC---------TSLAWSADGQTLFAGYTDNLVRVWQ 311
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 28.9 bits (63), Expect = 1.0
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 13 GPDGGLAVSEEFGDVRLFGSARQPLGSLGGWTGHTFGCPAGICSNSEGNVIVADEQRRQV 72
GP G S GD R F + LGS GG +G T +S G++ + E+RR +
Sbjct: 79 GPARGAGKSSTNGDCRRFRGSLASLGSRGGGSGGTGS------GSSHGHLHDSAEERRLI 132
>gi|91208437 GEM interacting protein [Homo sapiens]
Length = 970
Score = 28.5 bits (62), Expect = 1.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 5 EGPCWVGPGPDGGLAVSEEFGDVRL 29
E CW GP P+G + ++ E D+RL
Sbjct: 63 EASCWSGPSPEGPVPLTGEELDLRL 87
>gi|115430231 REC8 homolog [Homo sapiens]
Length = 547
Score = 28.1 bits (61), Expect = 1.8
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 56 SNSEGNVIVADEQRRQVTLFPRAGPPICLVSEGLGQPLG 94
S E ++++A+E+ + PR PP EG+G+ LG
Sbjct: 217 SRRELDLLIAEEEEAILLEIPRLPPPAPAEVEGIGEALG 255
>gi|115430229 REC8 homolog [Homo sapiens]
Length = 547
Score = 28.1 bits (61), Expect = 1.8
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 56 SNSEGNVIVADEQRRQVTLFPRAGPPICLVSEGLGQPLG 94
S E ++++A+E+ + PR PP EG+G+ LG
Sbjct: 217 SRRELDLLIAEEEEAILLEIPRLPPPAPAEVEGIGEALG 255
>gi|6631102 protocadherin 8 isoform 1 precursor [Homo sapiens]
Length = 1070
Score = 27.3 bits (59), Expect = 3.0
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 15/57 (26%)
Query: 12 PGPDGGLAVSEEF----GDVRLFGSARQPLGSLGG-----------WTGHTFGCPAG 53
PG +GG A E G RL G+ +P G+ G W GH+F +G
Sbjct: 850 PGSEGGSATGESACHFEGQQRLRGAHAEPYGASPGFGKEPAPPVAVWKGHSFNTISG 906
>gi|163914373 solute carrier family 8 (sodium/calcium exchanger),
member 1 isoform D [Homo sapiens]
Length = 937
Score = 26.9 bits (58), Expect = 3.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 7/38 (18%)
Query: 2 LGLEGPCWVGPGPDGGLAVSEEFGDVRLFGSARQPLGS 39
L LE P W+ G GG +++E+ D +QPL S
Sbjct: 624 LVLEEPKWIRRGMKGGFTITDEYDD-------KQPLTS 654
>gi|157412249 RUN and SH3 domain containing 1 isoform c [Homo
sapiens]
Length = 492
Score = 26.6 bits (57), Expect = 5.1
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 41 GGWTGHTFGCPAGICSNSEGNVIVADEQRRQVTLFPRAGPPICLVSEG 88
G W G FG P G N G A + RR + P + LV G
Sbjct: 371 GLWLGRLFGVPGGPAENENG----ALKSRRPSSWLPPTVSVLALVKRG 414
>gi|157412247 RUN and SH3 domain containing 1 isoform b [Homo
sapiens]
Length = 796
Score = 26.6 bits (57), Expect = 5.1
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 41 GGWTGHTFGCPAGICSNSEGNVIVADEQRRQVTLFPRAGPPICLVSEG 88
G W G FG P G N G A + RR + P + LV G
Sbjct: 675 GLWLGRLFGVPGGPAENENG----ALKSRRPSSWLPPTVSVLALVKRG 718
>gi|157412245 RUN and SH3 domain containing 1 isoform a [Homo
sapiens]
Length = 902
Score = 26.6 bits (57), Expect = 5.1
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 41 GGWTGHTFGCPAGICSNSEGNVIVADEQRRQVTLFPRAGPPICLVSEG 88
G W G FG P G N G A + RR + P + LV G
Sbjct: 781 GLWLGRLFGVPGGPAENENG----ALKSRRPSSWLPPTVSVLALVKRG 824
>gi|42476123 RUN and SH3 domain containing 1 isoform d [Homo
sapiens]
Length = 433
Score = 26.6 bits (57), Expect = 5.1
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 41 GGWTGHTFGCPAGICSNSEGNVIVADEQRRQVTLFPRAGPPICLVSEG 88
G W G FG P G N G A + RR + P + LV G
Sbjct: 312 GLWLGRLFGVPGGPAENENG----ALKSRRPSSWLPPTVSVLALVKRG 355
>gi|116235485 delta-notch-like EGF repeat-containing transmembrane
[Homo sapiens]
Length = 737
Score = 26.6 bits (57), Expect = 5.1
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
Query: 2 LGLEGPCWVGPGPDGGLAVSEEFGDVRLFGSARQPLGSLGGWTGHTFGCPAGI 54
L GPC P +GG+ S D + A +P G++ CPAGI
Sbjct: 42 LSAPGPCAAQPCRNGGVCTSRPEPDPQHPAPAGEP--------GYSCTCPAGI 86
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.141 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,837,053
Number of Sequences: 37866
Number of extensions: 287958
Number of successful extensions: 727
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 654
Number of HSP's gapped (non-prelim): 72
length of query: 123
length of database: 18,247,518
effective HSP length: 89
effective length of query: 34
effective length of database: 14,877,444
effective search space: 505833096
effective search space used: 505833096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.