Guide to the Human Genome
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Name: C20orf3 Sequence: fasta or formatted (416aa) NCBI GI: 24308201
Description:

chromosome 20 open reading frame 3

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         19           1
 C cysteine            0.7          3           1
 D aspartate           6.5         27           3
 E glutamate           6.2         26           1
 F phenylalanine       5.5         23           1
 G glycine             8.4         35           2
 H histidine           1.4          6           1
 I isoleucine          3.4         14           1
 K lysine              3.8         16           1
 L leucine            12.0         50           3
 M methionine          3.4         14           2
 N asparagine          2.6         11           1
 P proline             6.7         28           2
 Q glutamine           2.9         12           1
 R arginine            7.7         32           2
 S serine              7.7         32           3
 T threonine           5.0         21           2
 V valine              8.2         34           2
 W tryptophan          1.0          4           1
 Y tyrosine            2.2          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chromosome 20 open reading frame 3 
CYP2S1                0.009   cytochrome P450, family 2, subfamily S, polypeptide ...
PON2                  0.009   paraoxonase 2 isoform 2 
LRP5                  0.007   low density lipoprotein receptor-related protein 5 ...
LOC100291910          0.007   PREDICTED: hypothetical protein XP_002345652 
CREBBP                0.006   CREB binding protein isoform b 
CREBBP                0.006   CREB binding protein isoform a 
MED1                  0.006   mediator complex subunit 1 
PON1                  0.006   paraoxonase 1 precursor 
FLJ36208              0.006   hypothetical protein LOC283948 
LRP6                  0.005   low density lipoprotein receptor-related protein 6 ...
PON2                  0.005   paraoxonase 2 isoform 1 
ALS2CR8               0.005   amyotrophic lateral sclerosis 2 (juvenile) chromoso...
ALS2CR8               0.005   amyotrophic lateral sclerosis 2 (juvenile) chromoso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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