Search of human proteins with 6005794

Search of human proteins with 6005794

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|6005794 PRA1 domain family, member 2 [Homo sapiens]
         (178 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|6005794 PRA1 domain family, member 2 [Homo sapiens]                354   3e-98
gi|5453704 ADP-ribosylation-like factor 6 interacting protein 5 ...   167   4e-42
gi|222144309 Rab acceptor 1 [Homo sapiens]                             38   0.004
gi|148839378 gap junction protein, delta 3, 31.9kDa [Homo sapiens]     31   0.64 
gi|6912506 major intrinsic protein of lens fiber [Homo sapiens]        29   2.4  
gi|156119607 olfactory receptor, family 4, subfamily A, member 4...    28   3.2  
gi|4505513 opiate receptor-like 1 [Homo sapiens]                       28   4.1  
gi|33286424 opiate receptor-like 1 [Homo sapiens]                      28   4.1  
gi|52353941 olfactory receptor, family 51, subfamily Q, member 1...    28   5.4  
gi|11024714 ubiquitin B precursor [Homo sapiens]                       27   7.1  
gi|67191208 ubiquitin C [Homo sapiens]                                 27   7.1  
gi|146198640 glycerophosphodiester phosphodiesterase domain cont...    27   7.1  
gi|251831119 cytochrome b [Homo sapiens]                               27   9.2  
gi|117168245 ATPase, aminophospholipid transporter-like, Class I...    27   9.2  
gi|17158025 RNA pseudouridylate synthase domain containing 1 [Ho...    27   9.2  

>gi|6005794 PRA1 domain family, member 2 [Homo sapiens]
          Length = 178

 Score =  354 bits (908), Expect = 3e-98
 Identities = 178/178 (100%), Positives = 178/178 (100%)

Query: 1   MSEVRLPPLRALDDFVLGSARLAAPDPCDPQRWCHRVINNLLYYQTNYLLCFGIGLALAG 60
           MSEVRLPPLRALDDFVLGSARLAAPDPCDPQRWCHRVINNLLYYQTNYLLCFGIGLALAG
Sbjct: 1   MSEVRLPPLRALDDFVLGSARLAAPDPCDPQRWCHRVINNLLYYQTNYLLCFGIGLALAG 60

Query: 61  YVRPLHTLLSALVVAVALGVLVWAAETRAAVRRCRRSHPAACLAAVLAVGLLVLWVAGGA 120
           YVRPLHTLLSALVVAVALGVLVWAAETRAAVRRCRRSHPAACLAAVLAVGLLVLWVAGGA
Sbjct: 61  YVRPLHTLLSALVVAVALGVLVWAAETRAAVRRCRRSHPAACLAAVLAVGLLVLWVAGGA 120

Query: 121 CTFLFSIAGPVLLILVHASLRLRNLKNKIENKIESIGLKRTPMGLLLEALGQEQEAGS 178
           CTFLFSIAGPVLLILVHASLRLRNLKNKIENKIESIGLKRTPMGLLLEALGQEQEAGS
Sbjct: 121 CTFLFSIAGPVLLILVHASLRLRNLKNKIENKIESIGLKRTPMGLLLEALGQEQEAGS 178


>gi|5453704 ADP-ribosylation-like factor 6 interacting protein 5
           [Homo sapiens]
          Length = 188

 Score =  167 bits (423), Expect = 4e-42
 Identities = 79/173 (45%), Positives = 117/173 (67%)

Query: 3   EVRLPPLRALDDFVLGSARLAAPDPCDPQRWCHRVINNLLYYQTNYLLCFGIGLALAGYV 62
           +V + PLRA DDF  GS R A PD  D  +W +RV++NLLYYQTNYL+   + +++ G++
Sbjct: 2   DVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISIVGFL 61

Query: 63  RPLHTLLSALVVAVALGVLVWAAETRAAVRRCRRSHPAACLAAVLAVGLLVLWVAGGACT 122
            P + +L  +VV +     VWAA  +  +RR ++ +P   +  V+     ++ + GG   
Sbjct: 62  SPFNMILGGIVVVLVFTGFVWAAHNKDVLRRMKKRYPTTFVMVVMLASYFLISMFGGVMV 121

Query: 123 FLFSIAGPVLLILVHASLRLRNLKNKIENKIESIGLKRTPMGLLLEALGQEQE 175
           F+F I  P+LL+ +HASLRLRNLKNK+ENK+E IGLKRTPMG++L+AL Q++E
Sbjct: 122 FVFGITFPLLLMFIHASLRLRNLKNKLENKMEGIGLKRTPMGIVLDALEQQEE 174


>gi|222144309 Rab acceptor 1 [Homo sapiens]
          Length = 185

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 34  CHRVINNLLYYQTNYLLCFGIGLALAGYVRPLHTLLSALVVAVALGVLVWAAETRAAVRR 93
           C R++ N+ YYQ+NY+  F +GL L   V     L++  V   A  +L         V  
Sbjct: 64  CQRLVRNVEYYQSNYVFVF-LGLILYCVVTSPMLLVALAVFFGACYILYLRTLESKLVLF 122

Query: 94  CRRSHPAACLAAVLAVGLLVLWVAGGACTFLFSIAGPVLLILVHAS 139
            R   PA   A    +     W+AG      + +   +++I  HA+
Sbjct: 123 GREVSPAHQYALAGGISFPFFWLAGAGSAVFWVLGATLVVIGSHAA 168


>gi|148839378 gap junction protein, delta 3, 31.9kDa [Homo sapiens]
          Length = 294

 Score = 30.8 bits (68), Expect = 0.64
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 68  LLSALVVAVALGVLVWAAETRAAVR--RCRRSHPAA 101
           LLSAL+    LG L+W    RA  R  RC R+H  A
Sbjct: 199 LLSALLSVAELGHLLWKGRPRAGERDNRCNRAHEEA 234


>gi|6912506 major intrinsic protein of lens fiber [Homo sapiens]
          Length = 263

 Score = 28.9 bits (63), Expect = 2.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 43 YYQTNYLLCFGIGLALAGYVRPLHTLLSALVVAVALGVLV 82
          ++ T + + FG+G +L     PLH L  A+   +AL  LV
Sbjct: 17 FFATLFYVFFGLGSSLRWAPGPLHVLQVAMAFGLALATLV 56


>gi|156119607 olfactory receptor, family 4, subfamily A, member 47
           [Homo sapiens]
          Length = 309

 Score = 28.5 bits (62), Expect = 3.2
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 6/40 (15%)

Query: 108 AVGLLVLWVAGGACTFLFSIAGPVLLILVHASLRLRNLKN 147
           A+GLLV+   G ACT +F      LL+L+   + L +LKN
Sbjct: 192 AIGLLVVANGGLACTIVF------LLLLISYGVILHSLKN 225


>gi|4505513 opiate receptor-like 1 [Homo sapiens]
          Length = 370

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 14/26 (53%), Positives = 17/26 (65%)

Query: 121 CTFLFSIAGPVLLILVHASLRLRNLK 146
           C FLFS   PVL+I V  SL +R L+
Sbjct: 218 CIFLFSFIVPVLVISVCYSLMIRRLR 243


>gi|33286424 opiate receptor-like 1 [Homo sapiens]
          Length = 370

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 14/26 (53%), Positives = 17/26 (65%)

Query: 121 CTFLFSIAGPVLLILVHASLRLRNLK 146
           C FLFS   PVL+I V  SL +R L+
Sbjct: 218 CIFLFSFIVPVLVISVCYSLMIRRLR 243


>gi|52353941 olfactory receptor, family 51, subfamily Q, member 1
           [Homo sapiens]
          Length = 317

 Score = 27.7 bits (60), Expect = 5.4
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 11/93 (11%)

Query: 52  FGIGLALAGY-VRPLHTLLS-ALVVAVALGVLVWAAETRAAVRRCRRSHPAACLAAVLAV 109
           +G  LAL    V PL  ++S  L++   LG   WA   RA            CL+ +LAV
Sbjct: 200 YGFALALLIIIVDPLLIVISYTLILKNILGTATWAERLRALNN---------CLSHILAV 250

Query: 110 GLLVLWVAGGACTFLFSIAGPVLLILVHASLRL 142
            +L + + G + T  F+     L+ ++ A++ L
Sbjct: 251 LVLYIPMVGVSMTHRFAKHASPLVHVIMANIYL 283


>gi|11024714 ubiquitin B precursor [Homo sapiens]
          Length = 229

 Score = 27.3 bits (59), Expect = 7.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 112 LVLWVAGGACTFLFSIAGPVLLILVHASLRLRNLKNKIENK 152
           LVL + GG   F+ ++ G  + + V  S  + N+K KI++K
Sbjct: 69  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK 109



 Score = 27.3 bits (59), Expect = 7.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 112 LVLWVAGGACTFLFSIAGPVLLILVHASLRLRNLKNKIENK 152
           LVL + GG   F+ ++ G  + + V  S  + N+K KI++K
Sbjct: 145 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK 185


>gi|67191208 ubiquitin C [Homo sapiens]
          Length = 685

 Score = 27.3 bits (59), Expect = 7.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 112 LVLWVAGGACTFLFSIAGPVLLILVHASLRLRNLKNKIENK 152
           LVL + GG   F+ ++ G  + + V  S  + N+K KI++K
Sbjct: 69  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK 109



 Score = 27.3 bits (59), Expect = 7.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 112 LVLWVAGGACTFLFSIAGPVLLILVHASLRLRNLKNKIENK 152
           LVL + GG   F+ ++ G  + + V  S  + N+K KI++K
Sbjct: 145 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK 185



 Score = 27.3 bits (59), Expect = 7.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 112 LVLWVAGGACTFLFSIAGPVLLILVHASLRLRNLKNKIENK 152
           LVL + GG   F+ ++ G  + + V  S  + N+K KI++K
Sbjct: 221 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK 261



 Score = 27.3 bits (59), Expect = 7.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 112 LVLWVAGGACTFLFSIAGPVLLILVHASLRLRNLKNKIENK 152
           LVL + GG   F+ ++ G  + + V  S  + N+K KI++K
Sbjct: 297 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK 337



 Score = 27.3 bits (59), Expect = 7.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 112 LVLWVAGGACTFLFSIAGPVLLILVHASLRLRNLKNKIENK 152
           LVL + GG   F+ ++ G  + + V  S  + N+K KI++K
Sbjct: 373 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK 413



 Score = 27.3 bits (59), Expect = 7.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 112 LVLWVAGGACTFLFSIAGPVLLILVHASLRLRNLKNKIENK 152
           LVL + GG   F+ ++ G  + + V  S  + N+K KI++K
Sbjct: 449 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK 489



 Score = 27.3 bits (59), Expect = 7.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 112 LVLWVAGGACTFLFSIAGPVLLILVHASLRLRNLKNKIENK 152
           LVL + GG   F+ ++ G  + + V  S  + N+K KI++K
Sbjct: 525 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK 565



 Score = 27.3 bits (59), Expect = 7.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 112 LVLWVAGGACTFLFSIAGPVLLILVHASLRLRNLKNKIENK 152
           LVL + GG   F+ ++ G  + + V  S  + N+K KI++K
Sbjct: 601 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK 641


>gi|146198640 glycerophosphodiester phosphodiesterase domain
           containing 3 [Homo sapiens]
          Length = 318

 Score = 27.3 bits (59), Expect = 7.1
 Identities = 9/35 (25%), Positives = 22/35 (62%)

Query: 80  VLVWAAETRAAVRRCRRSHPAACLAAVLAVGLLVL 114
           + +WA+E  + +++C+ ++P   L+  ++ G  VL
Sbjct: 174 ITIWASEKSSVMKKCKAANPEMPLSFTISRGFWVL 208


>gi|251831119 cytochrome b [Homo sapiens]
          Length = 380

 Score = 26.9 bits (58), Expect = 9.2
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 8/91 (8%)

Query: 65  LHTLLSALVVAVALGVLVWAAETRAAVRRCRRSHPAACLAAVLAVGLLVL-WVAGGACTF 123
           L  LLS L++A+ + +L  + +     R   +S     L  +LA  LL+L W+ G   ++
Sbjct: 292 LALLLSILILAM-IPILHMSKQQSMMFRPLSQS-----LYWLLAADLLILTWIGGQPVSY 345

Query: 124 LFSIAGPVLLILVHAS-LRLRNLKNKIENKI 153
            F+I G V  +L   + L L    + IENK+
Sbjct: 346 PFTIIGQVASVLYFTTILILMPTISLIENKM 376


>gi|117168245 ATPase, aminophospholipid transporter-like, Class I,
           type 8A, member 2 [Homo sapiens]
          Length = 1188

 Score = 26.9 bits (58), Expect = 9.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 152 KIESIGLKRTPMGLLLEALGQEQEAG 177
           K+  +   RTP  +++EA+GQEQ  G
Sbjct: 537 KLGFVFTARTPFSVIIEAMGQEQTFG 562


>gi|17158025 RNA pseudouridylate synthase domain containing 1
          [Homo sapiens]
          Length = 312

 Score = 26.9 bits (58), Expect = 9.2
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 5/39 (12%)

Query: 22 LAAPDPCDPQRWCHRVINNLLYYQTNYLLCFGIGLALAG 60
          LA PD C   R+CH+     L + T+  LC  +  A AG
Sbjct: 51 LADPDTCYGFRFCHQ-----LDFSTSGALCVALNKAAAG 84


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.327    0.140    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,509,550
Number of Sequences: 37866
Number of extensions: 249409
Number of successful extensions: 819
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 798
Number of HSP's gapped (non-prelim): 26
length of query: 178
length of database: 18,247,518
effective HSP length: 96
effective length of query: 82
effective length of database: 14,612,382
effective search space: 1198215324
effective search space used: 1198215324
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.