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Search of human proteins with 58761488
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|58761488 hypothetical protein LOC89853 isoform 1 [Homo
sapiens]
(319 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|58761488 hypothetical protein LOC89853 isoform 1 [Homo sapiens] 652 0.0
gi|58761490 hypothetical protein LOC89853 isoform 2 [Homo sapiens] 456 e-128
gi|24308440 family with sequence similarity 125, member A [Homo ... 153 2e-37
gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens] 39 0.006
gi|126090663 zinc finger homeodomain 4 [Homo sapiens] 38 0.014
gi|52485606 formin-like 2 [Homo sapiens] 37 0.030
gi|40353727 synaptopodin isoform A [Homo sapiens] 37 0.030
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens] 37 0.030
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens] 37 0.030
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens] 37 0.030
gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens] 37 0.030
gi|62000702 diacylglycerol kinase kappa [Homo sapiens] 37 0.030
gi|118918413 MICAL C-terminal like [Homo sapiens] 36 0.040
gi|117938310 sine oculis binding protein homolog [Homo sapiens] 36 0.040
gi|150170670 piccolo isoform 2 [Homo sapiens] 36 0.052
gi|150378539 piccolo isoform 1 [Homo sapiens] 36 0.052
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 36 0.052
gi|110431370 espin [Homo sapiens] 35 0.068
gi|40807465 zinc finger protein 341 [Homo sapiens] 35 0.068
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 35 0.068
gi|222144283 hypothetical protein LOC65998 [Homo sapiens] 35 0.088
gi|210032580 SET domain containing 1B [Homo sapiens] 35 0.088
gi|41281683 disabled homolog 2 interacting protein isoform 2 [Ho... 35 0.12
gi|94967023 disabled homolog 2 interacting protein isoform 1 [Ho... 35 0.12
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 34 0.15
gi|160707950 methyl CpG binding protein 2 isoform 2 [Homo sapiens] 34 0.15
gi|4826830 methyl CpG binding protein 2 isoform 1 [Homo sapiens] 34 0.15
gi|4504733 insulin receptor substrate 4 [Homo sapiens] 34 0.15
gi|90903231 huntingtin [Homo sapiens] 34 0.15
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens] 34 0.15
>gi|58761488 hypothetical protein LOC89853 isoform 1 [Homo sapiens]
Length = 319
Score = 652 bits (1681), Expect = 0.0
Identities = 319/319 (100%), Positives = 319/319 (100%)
Query: 1 MRSCFCVRRSRDPPPPQPPPPPPQRGTDQSTMPEVKDLSEALPETSMDPITGVGVVASRN 60
MRSCFCVRRSRDPPPPQPPPPPPQRGTDQSTMPEVKDLSEALPETSMDPITGVGVVASRN
Sbjct: 1 MRSCFCVRRSRDPPPPQPPPPPPQRGTDQSTMPEVKDLSEALPETSMDPITGVGVVASRN 60
Query: 61 RAPTGYDVVAQTADGVDADLWKDGLFKSKVTRYLCFTRSFSKENSHLGNVLVDMKLIDIK 120
RAPTGYDVVAQTADGVDADLWKDGLFKSKVTRYLCFTRSFSKENSHLGNVLVDMKLIDIK
Sbjct: 61 RAPTGYDVVAQTADGVDADLWKDGLFKSKVTRYLCFTRSFSKENSHLGNVLVDMKLIDIK 120
Query: 121 DTLPVGFIPIQETVDTQEVAFRKKRLCIKFIPRDSTEAAICDIRIMGRTKQAPPQYTFIG 180
DTLPVGFIPIQETVDTQEVAFRKKRLCIKFIPRDSTEAAICDIRIMGRTKQAPPQYTFIG
Sbjct: 121 DTLPVGFIPIQETVDTQEVAFRKKRLCIKFIPRDSTEAAICDIRIMGRTKQAPPQYTFIG 180
Query: 181 ELNSMGIWYRMGRVPRNHDSSQPTTPSQSSAASTPAPNLPRHISLTLPATFRGRNSTRTD 240
ELNSMGIWYRMGRVPRNHDSSQPTTPSQSSAASTPAPNLPRHISLTLPATFRGRNSTRTD
Sbjct: 181 ELNSMGIWYRMGRVPRNHDSSQPTTPSQSSAASTPAPNLPRHISLTLPATFRGRNSTRTD 240
Query: 241 YEYQHSNLYAISAMDGVPFMISEKFSCVPESMQPFDLLGITIKSLAEIEKEYEYSFRTEQ 300
YEYQHSNLYAISAMDGVPFMISEKFSCVPESMQPFDLLGITIKSLAEIEKEYEYSFRTEQ
Sbjct: 241 YEYQHSNLYAISAMDGVPFMISEKFSCVPESMQPFDLLGITIKSLAEIEKEYEYSFRTEQ 300
Query: 301 SAAARLPPSPTRCQQIPQS 319
SAAARLPPSPTRCQQIPQS
Sbjct: 301 SAAARLPPSPTRCQQIPQS 319
>gi|58761490 hypothetical protein LOC89853 isoform 2 [Homo sapiens]
Length = 221
Score = 456 bits (1173), Expect = e-128
Identities = 221/221 (100%), Positives = 221/221 (100%)
Query: 1 MRSCFCVRRSRDPPPPQPPPPPPQRGTDQSTMPEVKDLSEALPETSMDPITGVGVVASRN 60
MRSCFCVRRSRDPPPPQPPPPPPQRGTDQSTMPEVKDLSEALPETSMDPITGVGVVASRN
Sbjct: 1 MRSCFCVRRSRDPPPPQPPPPPPQRGTDQSTMPEVKDLSEALPETSMDPITGVGVVASRN 60
Query: 61 RAPTGYDVVAQTADGVDADLWKDGLFKSKVTRYLCFTRSFSKENSHLGNVLVDMKLIDIK 120
RAPTGYDVVAQTADGVDADLWKDGLFKSKVTRYLCFTRSFSKENSHLGNVLVDMKLIDIK
Sbjct: 61 RAPTGYDVVAQTADGVDADLWKDGLFKSKVTRYLCFTRSFSKENSHLGNVLVDMKLIDIK 120
Query: 121 DTLPVGFIPIQETVDTQEVAFRKKRLCIKFIPRDSTEAAICDIRIMGRTKQAPPQYTFIG 180
DTLPVGFIPIQETVDTQEVAFRKKRLCIKFIPRDSTEAAICDIRIMGRTKQAPPQYTFIG
Sbjct: 121 DTLPVGFIPIQETVDTQEVAFRKKRLCIKFIPRDSTEAAICDIRIMGRTKQAPPQYTFIG 180
Query: 181 ELNSMGIWYRMGRVPRNHDSSQPTTPSQSSAASTPAPNLPR 221
ELNSMGIWYRMGRVPRNHDSSQPTTPSQSSAASTPAPNLPR
Sbjct: 181 ELNSMGIWYRMGRVPRNHDSSQPTTPSQSSAASTPAPNLPR 221
>gi|24308440 family with sequence similarity 125, member A [Homo
sapiens]
Length = 273
Score = 153 bits (386), Expect = 2e-37
Identities = 97/278 (34%), Positives = 149/278 (53%), Gaps = 16/278 (5%)
Query: 40 EALPETSMDPITGVGVVASRNRAPTGYDVVAQTADGVDADLWKDGLFKSKVTRYLCFTRS 99
+ +P T P+ G+ ++ P G+ ++ T +G A K F K +LC +
Sbjct: 2 DPVPGTDSAPLAGLAWSSASAPPPRGFSAISCTVEGAPASFGKS--FAQKSGYFLCLSSL 59
Query: 100 FSKENSHLGNVLVDMKLIDIKDTLPVGFIPIQETVDTQEVAFRKKRLCIKFIPRDSTEAA 159
S EN NV+ D++++ K LP+GF P+ + +D++ +KKR+C+K +P +T+ A
Sbjct: 60 GSLENPQ-ENVVADIQIVVDKSPLPLGFSPVCDPMDSKASVSKKKRMCVKLLPLGATDTA 118
Query: 160 ICDIRIMGRTKQAPPQYTFIGELNSMGIWYRMGR----VPRNHDSSQPTTPSQSSAASTP 215
+ D+R+ G+TK P Y IG++ IW + + VP+ S+ AAS P
Sbjct: 119 VFDVRLSGKTKTV-PGYLRIGDMGGFAIWCKKAKAPRPVPKPRGLSRDMQGLSLDAASQP 177
Query: 216 AP-NLPRHISLTLPATFRGRNSTRTDYEYQHSNLYAISAMDGVPFMISEKF---SCVPES 271
+ L + L + R R D Y+ S+LY ISAMDGVPF + +F SC P +
Sbjct: 178 SKGGLLERTASRLGS--RASTLRRNDSIYEASSLYGISAMDGVPFTLHPRFEGKSCSPLA 235
Query: 272 MQPFDLLGITIKSLAEIEKEYEYSFRTEQSAAARLPPS 309
F +TIKSLA+IE+EY Y F E++AAARLPPS
Sbjct: 236 FSAFG--DLTIKSLADIEEEYNYGFVVEKTAAARLPPS 271
>gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens]
Length = 1603
Score = 38.9 bits (89), Expect = 0.006
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
Query: 12 DPPPPQPPPPPPQRGTDQSTMPEVKDLSEALPETSMDPI 50
+PPPP PPPPP G ++PE+K PE+S P+
Sbjct: 428 EPPPPPPPPPPALPGPGPVSVPELK------PESSQTPV 460
>gi|126090663 zinc finger homeodomain 4 [Homo sapiens]
Length = 3571
Score = 37.7 bits (86), Expect = 0.014
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 13 PPPPQPPPPPPQRGTDQSTMPEVKDLSEALPETSMDPI 50
PPPP PPPPPP Q +P DL P M P+
Sbjct: 2005 PPPPPPPPPPPPSAPPQVQLPVSLDL-PLFPSIMMQPV 2041
Score = 34.3 bits (77), Expect = 0.15
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 13 PPPPQPPPPPPQRGTDQSTMPEVK 36
PPPP PPPPPP S P+V+
Sbjct: 2000 PPPPPPPPPPPPPPPPPSAPPQVQ 2023
Score = 32.3 bits (72), Expect = 0.57
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 13 PPPPQPPPPPPQRGTDQSTMPEVKDLSEALPETSMDPI 50
PPPP PPPP P S+M VK +P T P+
Sbjct: 1958 PPPPPPPPPLPPAPPQPSSMGPVK-----IPNTVSTPL 1990
Score = 31.2 bits (69), Expect = 1.3
Identities = 10/11 (90%), Positives = 10/11 (90%)
Query: 13 PPPPQPPPPPP 23
PPPP PPPPPP
Sbjct: 1997 PPPPPPPPPPP 2007
Score = 31.2 bits (69), Expect = 1.3
Identities = 10/11 (90%), Positives = 10/11 (90%)
Query: 13 PPPPQPPPPPP 23
PPPP PPPPPP
Sbjct: 1998 PPPPPPPPPPP 2008
Score = 31.2 bits (69), Expect = 1.3
Identities = 10/11 (90%), Positives = 10/11 (90%)
Query: 13 PPPPQPPPPPP 23
PPPP PPPPPP
Sbjct: 3117 PPPPPPPPPPP 3127
Score = 31.2 bits (69), Expect = 1.3
Identities = 10/11 (90%), Positives = 10/11 (90%)
Query: 13 PPPPQPPPPPP 23
PPPP PPPPPP
Sbjct: 3118 PPPPPPPPPPP 3128
Score = 31.2 bits (69), Expect = 1.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 13 PPPPQPPPPPPQRGTDQSTMPEVKD 37
PPPP PPPPP + Q T + K+
Sbjct: 3119 PPPPPPPPPPSSSLSGQQTEQQNKE 3143
Score = 28.5 bits (62), Expect = 8.3
Identities = 9/10 (90%), Positives = 9/10 (90%)
Query: 14 PPPQPPPPPP 23
PPP PPPPPP
Sbjct: 1993 PPPTPPPPPP 2002
>gi|52485606 formin-like 2 [Homo sapiens]
Length = 1092
Score = 36.6 bits (83), Expect = 0.030
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 13 PPPPQPPPPPPQRGTDQSTMPEVKDLSEALPETSMDPITG 52
PPPP PPPPPP G T+P L+ LP S P+ G
Sbjct: 563 PPPPPPPPPPPLPGPAAETVP-APPLAPPLP--SAPPLPG 599
Score = 32.7 bits (73), Expect = 0.44
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 13 PPPPQPPPPPPQRGTDQSTMPEVKDLSEALPETSMDP 49
PPPP PPPPPP P +E +P + P
Sbjct: 553 PPPPPPPPPPPPPPPPPPPPPLPGPAAETVPAPPLAP 589
>gi|40353727 synaptopodin isoform A [Homo sapiens]
Length = 903
Score = 36.6 bits (83), Expect = 0.030
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 13 PPPPQPPPPPPQRGTDQSTMPEVKDLSEALPETSMDPI 50
PPPP PPPPPP+ + Q P S A+P + PI
Sbjct: 790 PPPPPPPPPPPRMRSPQPARPG----SAAVPGAAFAPI 823
Score = 29.6 bits (65), Expect = 3.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 10 SRDPPPPQPPPPPPQRGTDQSTMPEVKDLSEALP 43
S PPP PPPPP + ++ ++ +EA P
Sbjct: 715 SMSSPPPLPPPPPMSPSWSERSVSPLRPETEARP 748
>gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 36.6 bits (83), Expect = 0.030
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 7 VRRSRDPPPPQPPPPPPQRGTDQSTMP 33
++ ++ PPP PPPPPP +Q TMP
Sbjct: 644 LQATQTAPPPPPPPPPPPPAPEQQTMP 670
>gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 36.6 bits (83), Expect = 0.030
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 7 VRRSRDPPPPQPPPPPPQRGTDQSTMP 33
++ ++ PPP PPPPPP +Q TMP
Sbjct: 644 LQATQTAPPPPPPPPPPPPAPEQQTMP 670
>gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 36.6 bits (83), Expect = 0.030
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 7 VRRSRDPPPPQPPPPPPQRGTDQSTMP 33
++ ++ PPP PPPPPP +Q TMP
Sbjct: 644 LQATQTAPPPPPPPPPPPPAPEQQTMP 670
>gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens]
Length = 1132
Score = 36.6 bits (83), Expect = 0.030
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 7 VRRSRDPPPPQPPPPPPQRGTDQSTMP 33
++ ++ PPP PPPPPP +Q TMP
Sbjct: 650 LQATQTAPPPPPPPPPPPPAPEQQTMP 676
>gi|62000702 diacylglycerol kinase kappa [Homo sapiens]
Length = 1271
Score = 36.6 bits (83), Expect = 0.030
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 10 SRDPPPPQPPPPPPQRGTDQSTMPEVKDLSEALPETSMDP 49
S +PPPP PPPPPP + P LSEA PE +P
Sbjct: 23 SPEPPPPWPPPPPP-----PAPPPAPPLLSEASPEPIPEP 57
>gi|118918413 MICAL C-terminal like [Homo sapiens]
Length = 695
Score = 36.2 bits (82), Expect = 0.040
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 7 VRRSRDPPPPQPPPPPP---QRGTDQSTMPEVKDLSEALPETS 46
+R++ PPPP PPPPPP G D P ++EA S
Sbjct: 452 LRQAAPPPPPPPPPPPPPPTAGGADSKNFPLRAQVTEASSSAS 494
>gi|117938310 sine oculis binding protein homolog [Homo sapiens]
Length = 873
Score = 36.2 bits (82), Expect = 0.040
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 9 RSRDPPPPQPPPPPPQRGTDQSTMPEVKDLSE 40
+S +PPP QPPPPPP + PE +SE
Sbjct: 736 KSAEPPPEQPPPPPPPAPPKKLLSPEEPAVSE 767
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 35.8 bits (81), Expect = 0.052
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 13 PPPPQPPPPPPQRGTDQSTMPEVKDLSEALPETSMDPI 50
PPPP PPPP P + + T+ K L+ A P T+ P+
Sbjct: 2418 PPPPPPPPPLPPPTSPKPTILPKKKLTVASPVTTATPL 2455
Score = 32.3 bits (72), Expect = 0.57
Identities = 11/14 (78%), Positives = 11/14 (78%)
Query: 10 SRDPPPPQPPPPPP 23
S PPPP PPPPPP
Sbjct: 2402 SAQPPPPPPPPPPP 2415
Score = 32.3 bits (72), Expect = 0.57
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 13 PPPPQPPPPPPQRGTDQSTMPEVKDLSEALPE---TSMDPIT 51
PPPP PPPPPP P LP+ T P+T
Sbjct: 2409 PPPPPPPPPPPPPPPPPPLPPPTSPKPTILPKKKLTVASPVT 2450
Score = 31.6 bits (70), Expect = 0.98
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 10 SRDPPPPQPPPPPP 23
++ PPPP PPPPPP
Sbjct: 2403 AQPPPPPPPPPPPP 2416
Score = 31.2 bits (69), Expect = 1.3
Identities = 10/11 (90%), Positives = 10/11 (90%)
Query: 13 PPPPQPPPPPP 23
PPPP PPPPPP
Sbjct: 2407 PPPPPPPPPPP 2417
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 35.8 bits (81), Expect = 0.052
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 13 PPPPQPPPPPPQRGTDQSTMPEVKDLSEALPETSMDPI 50
PPPP PPPP P + + T+ K L+ A P T+ P+
Sbjct: 2418 PPPPPPPPPLPPPTSPKPTILPKKKLTVASPVTTATPL 2455
Score = 32.3 bits (72), Expect = 0.57
Identities = 11/14 (78%), Positives = 11/14 (78%)
Query: 10 SRDPPPPQPPPPPP 23
S PPPP PPPPPP
Sbjct: 2402 SAQPPPPPPPPPPP 2415
Score = 32.3 bits (72), Expect = 0.57
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 13 PPPPQPPPPPPQRGTDQSTMPEVKDLSEALPE---TSMDPIT 51
PPPP PPPPPP P LP+ T P+T
Sbjct: 2409 PPPPPPPPPPPPPPPPPPLPPPTSPKPTILPKKKLTVASPVT 2450
Score = 31.6 bits (70), Expect = 0.98
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 10 SRDPPPPQPPPPPP 23
++ PPPP PPPPPP
Sbjct: 2403 AQPPPPPPPPPPPP 2416
Score = 31.2 bits (69), Expect = 1.3
Identities = 10/11 (90%), Positives = 10/11 (90%)
Query: 13 PPPPQPPPPPP 23
PPPP PPPPPP
Sbjct: 2407 PPPPPPPPPPP 2417
>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
Length = 1303
Score = 35.8 bits (81), Expect = 0.052
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 14 PPPQPPPPPPQRGTDQSTMPEVKDLS 39
PPP PPPPPP G Q MP + LS
Sbjct: 541 PPPPPPPPPPPPGPPQMPMPVHEPLS 566
>gi|110431370 espin [Homo sapiens]
Length = 854
Score = 35.4 bits (80), Expect = 0.068
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 8 RRSRDPPPPQPPPPPPQRGTDQSTMPEVKDLSEALPETSMDPITGVGVVASRNRAPTGYD 67
+ SR+ PPP PPPPPP S P + LP S P G +S + ++
Sbjct: 590 KASRELPPPPPPPPPPLPEAASSPPP-----APPLPLESAGPGCGQRRSSSSTGSTKSFN 644
Query: 68 VVAQTAD 74
+++ T D
Sbjct: 645 MMSPTGD 651
Score = 30.8 bits (68), Expect = 1.7
Identities = 12/21 (57%), Positives = 12/21 (57%)
Query: 13 PPPPQPPPPPPQRGTDQSTMP 33
PPPP PPPPP GT P
Sbjct: 432 PPPPSFPPPPPPPGTQLPPPP 452
>gi|40807465 zinc finger protein 341 [Homo sapiens]
Length = 847
Score = 35.4 bits (80), Expect = 0.068
Identities = 12/12 (100%), Positives = 12/12 (100%)
Query: 13 PPPPQPPPPPPQ 24
PPPPQPPPPPPQ
Sbjct: 191 PPPPQPPPPPPQ 202
Score = 32.7 bits (73), Expect = 0.44
Identities = 11/12 (91%), Positives = 11/12 (91%)
Query: 13 PPPPQPPPPPPQ 24
PPPP PPPPPPQ
Sbjct: 184 PPPPLPPPPPPQ 195
Score = 28.9 bits (63), Expect = 6.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 10 SRDPPPPQPPPPPPQRGTDQSTMPEVKDL 38
++ PPPP PPPP P Q P + L
Sbjct: 176 TQPPPPPPPPPPLPPPPPPQPPPPPPQSL 204
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 35.4 bits (80), Expect = 0.068
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 11 RDPPPPQPPPPPPQRGTDQSTMPEVKDLSEALPET 45
+D PPP PPP PP QS P ++ +E P T
Sbjct: 1056 KDLPPPPPPPQPPAPIQPQSVPPPIQPEAEKFPST 1090
>gi|222144283 hypothetical protein LOC65998 [Homo sapiens]
Length = 678
Score = 35.0 bits (79), Expect = 0.088
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 13 PPPPQPPPPPPQRGTDQ 29
PPPP PPPPPP R +Q
Sbjct: 561 PPPPPPPPPPPPRSREQ 577
Score = 30.4 bits (67), Expect = 2.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 13 PPPPQPPPPPPQRGTDQSTMP 33
PPPP PPPPP R ++ P
Sbjct: 563 PPPPPPPPPPRSREQRRNYQP 583
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 35.0 bits (79), Expect = 0.088
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 13 PPPPQPPPPPPQRGTDQSTMPEVKDLSEALPETSMDP 49
P PPQPPPPPP + + +P K+L P ++ P
Sbjct: 1542 PLPPQPPPPPPPPPVEPTKLP-FKELDNQWPSEAIPP 1577
Score = 30.8 bits (68), Expect = 1.7
Identities = 11/14 (78%), Positives = 11/14 (78%)
Query: 13 PPPPQPPPPPPQRG 26
P PP PPPPPPQ G
Sbjct: 689 PLPPPPPPPPPQPG 702
Score = 30.4 bits (67), Expect = 2.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 13 PPPPQPPPPPPQRGTDQSTMPEV 35
P PP+PP PPP+ T ++ P V
Sbjct: 1285 PRPPRPPSPPPEPETTDASHPSV 1307
Score = 28.9 bits (63), Expect = 6.3
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 13 PPPPQPPPPPPQRGTDQSTMP 33
PPP PPPPPP T+P
Sbjct: 706 PPPLPPPPPPPPPAHPAVTVP 726
>gi|41281683 disabled homolog 2 interacting protein isoform 2 [Homo
sapiens]
Length = 1065
Score = 34.7 bits (78), Expect = 0.12
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
Query: 8 RRSRDPPPPQPPPPPPQRG--------TDQSTMPEVKDLSEALPE 44
RR PPPP PPPPP RG T Q P L+ A P+
Sbjct: 791 RRIDQPPPPPPPPPPAPRGRTPPNLLSTLQYPRPSSGTLASASPD 835
Score = 31.2 bits (69), Expect = 1.3
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 8 RRSRDPPPPQPPPPPP 23
+R D PPP PPPPPP
Sbjct: 790 QRRIDQPPPPPPPPPP 805
>gi|94967023 disabled homolog 2 interacting protein isoform 1 [Homo
sapiens]
Length = 1132
Score = 34.7 bits (78), Expect = 0.12
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
Query: 8 RRSRDPPPPQPPPPPPQRG--------TDQSTMPEVKDLSEALPE 44
RR PPPP PPPPP RG T Q P L+ A P+
Sbjct: 887 RRIDQPPPPPPPPPPAPRGRTPPNLLSTLQYPRPSSGTLASASPD 931
Score = 31.2 bits (69), Expect = 1.3
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 8 RRSRDPPPPQPPPPPP 23
+R D PPP PPPPPP
Sbjct: 886 QRRIDQPPPPPPPPPP 901
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 34.3 bits (77), Expect = 0.15
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 11 RDPPPPQPPPPPPQRGTDQSTMPEVKDLSEALPETSMDPITGVGVVASRNRA--PTGYDV 68
+ PPPP PP PPP G P+ +EALP + D G + SR+ + G
Sbjct: 33 QQPPPPPPPAPPPGPG---PAPPQHPPRAEALPPEAADEGGPRGRLRSRDSSCGRPGTPG 89
Query: 69 VAQTADG 75
A TA G
Sbjct: 90 AASTAKG 96
>gi|160707950 methyl CpG binding protein 2 isoform 2 [Homo sapiens]
Length = 498
Score = 34.3 bits (77), Expect = 0.15
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 14 PPPQPPPPPPQRGTDQSTMPEVKDLSEALPETSMDPITG 52
PP PPPP P+ D ++ PE +DLS ++ + P G
Sbjct: 396 PPLPPPPPEPESSEDPTSPPEPQDLSSSVCKEEKMPRGG 434
>gi|4826830 methyl CpG binding protein 2 isoform 1 [Homo sapiens]
Length = 486
Score = 34.3 bits (77), Expect = 0.15
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 14 PPPQPPPPPPQRGTDQSTMPEVKDLSEALPETSMDPITG 52
PP PPPP P+ D ++ PE +DLS ++ + P G
Sbjct: 384 PPLPPPPPEPESSEDPTSPPEPQDLSSSVCKEEKMPRGG 422
>gi|4504733 insulin receptor substrate 4 [Homo sapiens]
Length = 1257
Score = 34.3 bits (77), Expect = 0.15
Identities = 12/15 (80%), Positives = 12/15 (80%)
Query: 13 PPPPQPPPPPPQRGT 27
PPPP PPPPPP GT
Sbjct: 629 PPPPPPPPPPPAGGT 643
Score = 33.1 bits (74), Expect = 0.34
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 8 RRSRDPPPPQPPPPPPQRG 26
++ + PPPP PPPPPP G
Sbjct: 623 KQQQMPPPPPPPPPPPPAG 641
>gi|90903231 huntingtin [Homo sapiens]
Length = 3144
Score = 34.3 bits (77), Expect = 0.15
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 8 RRSRDPPPPQPPPPPPQ 24
++ + PPPP PPPPPPQ
Sbjct: 36 QQQQQPPPPPPPPPPPQ 52
Score = 29.6 bits (65), Expect = 3.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 13 PPPPQPPPPPPQRGTDQSTMPEVKDLS 39
PPPP PPPPP ++ K+LS
Sbjct: 69 PPPPPPPPPPGPAVAEEPLHRPKKELS 95
Score = 29.3 bits (64), Expect = 4.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 8 RRSRDPPPPQPPPPPP 23
++ + PPP PPPPPP
Sbjct: 35 QQQQQQPPPPPPPPPP 50
Score = 28.5 bits (62), Expect = 8.3
Identities = 10/12 (83%), Positives = 10/12 (83%)
Query: 13 PPPPQPPPPPPQ 24
PPPPQ P PPPQ
Sbjct: 48 PPPPQLPQPPPQ 59
>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
Length = 502
Score = 34.3 bits (77), Expect = 0.15
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 13 PPPPQPPPPPPQRGTDQSTMP 33
PPPP PPPPPP G + P
Sbjct: 394 PPPPPPPPPPPSSGNGPAPPP 414
Score = 31.6 bits (70), Expect = 0.98
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 7 VRRSRDPPPPQPPPPPPQRGTDQSTMPEV 35
VR+ P PPPPPP RG +Q P +
Sbjct: 303 VRQEMRRQEPLPPPPPPSRGGNQLPRPPI 331
Score = 28.9 bits (63), Expect = 6.3
Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 13 PPPPQP-PPPPPQRGTDQSTMPEVKDLSEALP 43
PPPP P PPPP RG P S LP
Sbjct: 351 PPPPTPRGPPPPGRGGPPPPPPPATGRSGPLP 382
Score = 28.5 bits (62), Expect = 8.3
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 13 PPPPQPPPPPPQRGTDQSTMP 33
P PP PPPPPP + P
Sbjct: 392 PMPPPPPPPPPPPSSGNGPAP 412
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,660,748
Number of Sequences: 37866
Number of extensions: 756419
Number of successful extensions: 16314
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 95
Number of HSP's that attempted gapping in prelim test: 11378
Number of HSP's gapped (non-prelim): 3269
length of query: 319
length of database: 18,247,518
effective HSP length: 102
effective length of query: 217
effective length of database: 14,385,186
effective search space: 3121585362
effective search space used: 3121585362
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.