Guide to the Human Genome
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Name: MAGEA12 Sequence: fasta or formatted (314aa) NCBI GI: 58530873
Description:

melanoma antigen family A, 12

Referenced in:

Melanoma Antigen Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         22           2
 C cysteine            1.3          4           1
 D aspartate           3.2         10           1
 E glutamate          11.8         37           2
 F phenylalanine       3.8         12           2
 G glycine             6.7         21           2
 H histidine           2.9          9           2
 I isoleucine          4.5         14           2
 K lysine              3.5         11           1
 L leucine            12.1         38           3
 M methionine          1.0          3           1
 N asparagine          1.6          5           1
 P proline             7.0         22           2
 Q glutamine           4.8         15           1
 R arginine            3.8         12           1
 S serine              8.6         27           4
 T threonine           4.8         15           2
 V valine              7.3         23           2
 W tryptophan          1.3          4           1
 Y tyrosine            3.2         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   melanoma antigen family A, 12 
MAGEA2                0.883   melanoma antigen family A, 2 
MAGEA2                0.883   melanoma antigen family A, 2 
MAGEA2                0.883   melanoma antigen family A, 2 
MAGEA2B               0.883   melanoma antigen family A, 2B 
MAGEA3                0.858   melanoma antigen family A, 3 
MAGEA6                0.850   melanoma antigen family A, 6 
MAGEA6                0.850   melanoma antigen family A, 6 
MAGEA4                0.648   melanoma antigen family A, 4 
MAGEA4                0.648   melanoma antigen family A, 4 
MAGEA4                0.648   melanoma antigen family A, 4 
MAGEA4                0.648   melanoma antigen family A, 4 
MAGEA1                0.610   melanoma antigen family A, 1 
MAGEA8                0.595   melanoma antigen family A, 8 
MAGEA9B               0.545   melanoma antigen family A, 9 -like 
MAGEA9                0.545   melanoma antigen family A, 9 
MAGEA11               0.542   melanoma antigen family A, 11 isoform b 
MAGEA11               0.542   melanoma antigen family A, 11 isoform a 
MAGEA10               0.460   melanoma antigen family A, 10 
MAGEA10               0.460   melanoma antigen family A, 10 
MAGEB16               0.352   melanoma antigen family B, 16 
MAGEB4                0.322   melanoma antigen family B, 4 
MAGEB1                0.312   melanoma antigen family B, 1 
MAGEB1                0.312   melanoma antigen family B, 1 
MAGEB1                0.312   melanoma antigen family B, 1 
MAGEB10               0.311   melanoma antigen family B, 10 
MAGEB18               0.307   melanoma antigen family B, 18 
MAGEC3                0.299   melanoma antigen family C, 3 isoform 2 
LOC100292575          0.294   PREDICTED: similar to melanoma antigen family C, 2 ...
MAGEC2                0.294   melanoma antigen family C, 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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