Search of human proteins with 58331107

Search of human proteins with 58331107

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|58331107 hypothetical protein LOC83932 isoform b [Homo
sapiens]
         (250 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|58331107 hypothetical protein LOC83932 isoform b [Homo sapiens]    537   e-153
gi|58331105 hypothetical protein LOC83932 isoform a [Homo sapiens]    516   e-147
gi|170016061 spectrin, beta, non-erythrocytic 5 [Homo sapiens]         31   0.89 
gi|16445033 ACRC protein [Homo sapiens]                                30   2.6  
gi|239750685 PREDICTED: hypothetical protein XP_002347506 [Homo ...    28   5.8  
gi|239744995 PREDICTED: hypothetical protein XP_002343325 [Homo ...    28   5.8  
gi|45827771 autoantigen RCD8 [Homo sapiens]                            28   5.8  
gi|223468617 family with sequence similarity 75, member C1 [Homo...    28   7.5  
gi|42558250 membrane component chromosome 11 surface marker 1 is...    28   9.8  
gi|42734503 membrane component chromosome 11 surface marker 1 is...    28   9.8  

>gi|58331107 hypothetical protein LOC83932 isoform b [Homo sapiens]
          Length = 250

 Score =  537 bits (1383), Expect = e-153
 Identities = 250/250 (100%), Positives = 250/250 (100%)

Query: 1   MDDDLMLALRLQEEWNLQEAERDHAQESLSLVDASWELVDPTPDLQALFVQFNDQFFWGQ 60
           MDDDLMLALRLQEEWNLQEAERDHAQESLSLVDASWELVDPTPDLQALFVQFNDQFFWGQ
Sbjct: 1   MDDDLMLALRLQEEWNLQEAERDHAQESLSLVDASWELVDPTPDLQALFVQFNDQFFWGQ 60

Query: 61  LEAVEVKWSVRMTLCAGICSYEGKGGMCSIRLSEPLLKLRPRKDLVETLLHEMIHAYLFV 120
           LEAVEVKWSVRMTLCAGICSYEGKGGMCSIRLSEPLLKLRPRKDLVETLLHEMIHAYLFV
Sbjct: 61  LEAVEVKWSVRMTLCAGICSYEGKGGMCSIRLSEPLLKLRPRKDLVETLLHEMIHAYLFV 120

Query: 121 TNNDKDREGHGPEFCKHMHRINSLTGANITVYHTFHDEVDEYRRHWWRCNGPCQHRPPYY 180
           TNNDKDREGHGPEFCKHMHRINSLTGANITVYHTFHDEVDEYRRHWWRCNGPCQHRPPYY
Sbjct: 121 TNNDKDREGHGPEFCKHMHRINSLTGANITVYHTFHDEVDEYRRHWWRCNGPCQHRPPYY 180

Query: 181 GYVKRATNREPSAHDYWWAEHQKTCGGTYIKIKEPENYSKKGKGKAKLGKEPVLAAENKG 240
           GYVKRATNREPSAHDYWWAEHQKTCGGTYIKIKEPENYSKKGKGKAKLGKEPVLAAENKG
Sbjct: 181 GYVKRATNREPSAHDYWWAEHQKTCGGTYIKIKEPENYSKKGKGKAKLGKEPVLAAENKG 240

Query: 241 TFVYILLIFM 250
           TFVYILLIFM
Sbjct: 241 TFVYILLIFM 250


>gi|58331105 hypothetical protein LOC83932 isoform a [Homo sapiens]
          Length = 489

 Score =  516 bits (1328), Expect = e-147
 Identities = 239/239 (100%), Positives = 239/239 (100%)

Query: 1   MDDDLMLALRLQEEWNLQEAERDHAQESLSLVDASWELVDPTPDLQALFVQFNDQFFWGQ 60
           MDDDLMLALRLQEEWNLQEAERDHAQESLSLVDASWELVDPTPDLQALFVQFNDQFFWGQ
Sbjct: 1   MDDDLMLALRLQEEWNLQEAERDHAQESLSLVDASWELVDPTPDLQALFVQFNDQFFWGQ 60

Query: 61  LEAVEVKWSVRMTLCAGICSYEGKGGMCSIRLSEPLLKLRPRKDLVETLLHEMIHAYLFV 120
           LEAVEVKWSVRMTLCAGICSYEGKGGMCSIRLSEPLLKLRPRKDLVETLLHEMIHAYLFV
Sbjct: 61  LEAVEVKWSVRMTLCAGICSYEGKGGMCSIRLSEPLLKLRPRKDLVETLLHEMIHAYLFV 120

Query: 121 TNNDKDREGHGPEFCKHMHRINSLTGANITVYHTFHDEVDEYRRHWWRCNGPCQHRPPYY 180
           TNNDKDREGHGPEFCKHMHRINSLTGANITVYHTFHDEVDEYRRHWWRCNGPCQHRPPYY
Sbjct: 121 TNNDKDREGHGPEFCKHMHRINSLTGANITVYHTFHDEVDEYRRHWWRCNGPCQHRPPYY 180

Query: 181 GYVKRATNREPSAHDYWWAEHQKTCGGTYIKIKEPENYSKKGKGKAKLGKEPVLAAENK 239
           GYVKRATNREPSAHDYWWAEHQKTCGGTYIKIKEPENYSKKGKGKAKLGKEPVLAAENK
Sbjct: 181 GYVKRATNREPSAHDYWWAEHQKTCGGTYIKIKEPENYSKKGKGKAKLGKEPVLAAENK 239


>gi|170016061 spectrin, beta, non-erythrocytic 5 [Homo sapiens]
          Length = 3639

 Score = 31.2 bits (69), Expect = 0.89
 Identities = 14/42 (33%), Positives = 27/42 (64%)

Query: 58  WGQLEAVEVKWSVRMTLCAGICSYEGKGGMCSIRLSEPLLKL 99
           WGQLEA++ + +V++     +CS+  + G   ++L + LL+L
Sbjct: 947 WGQLEALKREKAVQLAHSVEVCSFLQECGPTQVQLRDVLLQL 988


>gi|16445033 ACRC protein [Homo sapiens]
          Length = 691

 Score = 29.6 bits (65), Expect = 2.6
 Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 16/120 (13%)

Query: 17  LQEAERDHAQESLSLVDASWELVDPTPDLQALFVQFNDQFFWGQL-EAVEVKWSVRMTLC 75
           LQ+ E+       +L     ELV    DL      FN      +L E + + W+ +M   
Sbjct: 500 LQDLEKSKKYSGKNLKRNKDELVQRIYDL------FNRSVCDKKLPEKLRIGWNNKMVKT 553

Query: 76  AGICS-----YEGKGGMCSIRLSEPLLKLRPRKDLV-ETLLHEMIHAYLFVTNNDKDREG 129
           AG+CS     Y        I++    LK+    D + +TL+HEM HA  ++ +   D  G
Sbjct: 554 AGLCSTGEMWYPKWRRFAKIQIG---LKVCDSADRIRDTLIHEMCHAASWLIDGIHDSHG 610


>gi|239750685 PREDICTED: hypothetical protein XP_002347506 [Homo
           sapiens]
          Length = 684

 Score = 28.5 bits (62), Expect = 5.8
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 163 RRHWWRCNGPCQHRPPYYG-YVKRATNREPS---AHDYWWAEHQKTC 205
           R+ +W C+G    R  Y G   +R+T+ +PS   +H +W A   + C
Sbjct: 156 RQSYWHCHGSRHTRSGYIGPQRQRSTSGQPSLRKSHGHWAAGTARGC 202


>gi|239744995 PREDICTED: hypothetical protein XP_002343325 [Homo
           sapiens]
          Length = 909

 Score = 28.5 bits (62), Expect = 5.8
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 163 RRHWWRCNGPCQHRPPYYG-YVKRATNREPS---AHDYWWAEHQKTC 205
           R+ +W C+G    R  Y G   +R+T+ +PS   +H +W A   + C
Sbjct: 156 RQSYWHCHGSRHTRSGYIGPQRQRSTSGQPSLRKSHGHWAAGTARGC 202


>gi|45827771 autoantigen RCD8 [Homo sapiens]
          Length = 1401

 Score = 28.5 bits (62), Expect = 5.8
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 175 HRPPYYGYVKRAT---NREPSAHDYWWAEHQKTCGGTYIKIKEPENYSKKGKGKAKLGKE 231
           HRPPY+   +R +   + E S HD   A      GG   K+  P   +K  K K      
Sbjct: 859 HRPPYHLLQQRDSQDASAEQSDHDDEVASLASASGGFGTKVPAPRLPAKDWKTKGSPRTS 918

Query: 232 PVLAAENK 239
           P L  ++K
Sbjct: 919 PKLKRKSK 926


>gi|223468617 family with sequence similarity 75, member C1 [Homo
            sapiens]
          Length = 1188

 Score = 28.1 bits (61), Expect = 7.5
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 129  GHGPEFCKHMHRINSLTGANITVYHTFH-DEVDEYRRHWWR--CNGPCQHRPPYY 180
            G   E  + M  +  +   N+++ H  H  +V++ R+ +    C  PC HR P+Y
Sbjct: 1053 GSSAEAERLMTAVGQIPEENMSLCHARHASKVNQQRQQFQAPVCGFPCNHRHPFY 1107


>gi|42558250 membrane component chromosome 11 surface marker 1
           isoform 1 [Homo sapiens]
          Length = 709

 Score = 27.7 bits (60), Expect = 9.8
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 9/47 (19%)

Query: 25  AQESLSLVDASWELVDPTPDLQALFVQFNDQF------FWGQLEAVE 65
           ++E LSL+D  ++LVDP  D+    ++ N+Q+       W  LE  E
Sbjct: 179 SEEELSLLDEFYKLVDPERDMS---LRLNEQYEHASIHLWDLLEGKE 222


>gi|42734503 membrane component chromosome 11 surface marker 1
           isoform 2 [Homo sapiens]
          Length = 694

 Score = 27.7 bits (60), Expect = 9.8
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 9/47 (19%)

Query: 25  AQESLSLVDASWELVDPTPDLQALFVQFNDQF------FWGQLEAVE 65
           ++E LSL+D  ++LVDP  D+    ++ N+Q+       W  LE  E
Sbjct: 179 SEEELSLLDEFYKLVDPERDMS---LRLNEQYEHASIHLWDLLEGKE 222


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.137    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,935,784
Number of Sequences: 37866
Number of extensions: 505771
Number of successful extensions: 1039
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1032
Number of HSP's gapped (non-prelim): 14
length of query: 250
length of database: 18,247,518
effective HSP length: 100
effective length of query: 150
effective length of database: 14,460,918
effective search space: 2169137700
effective search space used: 2169137700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.