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Search of human proteins with 5802966
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5802966 destrin isoform a [Homo sapiens]
(165 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5802966 destrin isoform a [Homo sapiens] 337 4e-93
gi|58530848 destrin isoform b [Homo sapiens] 303 6e-83
gi|169165083 PREDICTED: similar to Destrin (actin depolymerizing... 246 6e-66
gi|169165465 PREDICTED: similar to Destrin (actin depolymerizing... 244 2e-65
gi|113415024 PREDICTED: similar to destrin [Homo sapiens] 244 2e-65
gi|5031635 cofilin 1 (non-muscle) [Homo sapiens] 237 3e-63
gi|14719392 cofilin 2 [Homo sapiens] 230 5e-61
gi|33946278 cofilin 2 [Homo sapiens] 230 5e-61
gi|239754918 PREDICTED: similar to destrin [Homo sapiens] 195 2e-50
gi|239749458 PREDICTED: similar to destrin [Homo sapiens] 195 2e-50
gi|239743590 PREDICTED: hypothetical protein XP_002342890 [Homo ... 195 2e-50
gi|6005846 twinfilin-like protein [Homo sapiens] 43 1e-04
gi|40068475 twinfilin 1 [Homo sapiens] 39 0.002
gi|33519475 NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kD... 31 0.43
gi|56121815 ADAM metallopeptidase with thrombospondin type 1 mot... 28 3.6
gi|31542743 EF-hand domain (C-terminal) containing 2 [Homo sapiens] 28 4.7
gi|171542821 mitochondrial ubiquitin ligase activator of NFKB 1 ... 28 4.7
gi|115430239 spectrin, beta, non-erythrocytic 4 isoform sigma5 [... 28 4.7
gi|115430237 spectrin, beta, non-erythrocytic 4 isoform sigma1 [... 28 4.7
gi|64276808 ADAM metallopeptidase with thrombospondin type 1 mot... 27 6.2
gi|18426913 drebrin 1 isoform b [Homo sapiens] 27 8.0
gi|18426915 drebrin 1 isoform a [Homo sapiens] 27 8.0
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ... 27 8.0
>gi|5802966 destrin isoform a [Homo sapiens]
Length = 165
Score = 337 bits (863), Expect = 4e-93
Identities = 165/165 (100%), Positives = 165/165 (100%)
Query: 1 MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDV 60
MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDV
Sbjct: 1 MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDV 60
Query: 61 GVTITDPFKHFVGMLPEKDCRYALYDASFETKESRKEELMFFLWAPELAPLKSKMIYASS 120
GVTITDPFKHFVGMLPEKDCRYALYDASFETKESRKEELMFFLWAPELAPLKSKMIYASS
Sbjct: 61 GVTITDPFKHFVGMLPEKDCRYALYDASFETKESRKEELMFFLWAPELAPLKSKMIYASS 120
Query: 121 KDAIKKKFQGIKHECQANGPEDLNRACIAEKLGGSLIVAFEGCPV 165
KDAIKKKFQGIKHECQANGPEDLNRACIAEKLGGSLIVAFEGCPV
Sbjct: 121 KDAIKKKFQGIKHECQANGPEDLNRACIAEKLGGSLIVAFEGCPV 165
>gi|58530848 destrin isoform b [Homo sapiens]
Length = 148
Score = 303 bits (775), Expect = 6e-83
Identities = 148/148 (100%), Positives = 148/148 (100%)
Query: 18 MKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPE 77
MKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPE
Sbjct: 1 MKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPE 60
Query: 78 KDCRYALYDASFETKESRKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQA 137
KDCRYALYDASFETKESRKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQA
Sbjct: 61 KDCRYALYDASFETKESRKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQA 120
Query: 138 NGPEDLNRACIAEKLGGSLIVAFEGCPV 165
NGPEDLNRACIAEKLGGSLIVAFEGCPV
Sbjct: 121 NGPEDLNRACIAEKLGGSLIVAFEGCPV 148
>gi|169165083 PREDICTED: similar to Destrin (actin depolymerizing
factor) [Homo sapiens]
Length = 252
Score = 246 bits (628), Expect = 6e-66
Identities = 129/164 (78%), Positives = 134/164 (81%), Gaps = 8/164 (4%)
Query: 3 SGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGV 62
SGVQVADEVC IF D+KV KCST EEIKKRKK VIFCLSADKKCIIVEEGKEI GD+GV
Sbjct: 96 SGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGV 155
Query: 63 TITDPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSK 121
TIT PFKHFVGMLPEKDC YALYDASFETK+S R + FLWAPEL PLKSKMI+ S K
Sbjct: 156 TITGPFKHFVGMLPEKDCCYALYDASFETKKSGRVLFVCLFLWAPELPPLKSKMIFTSCK 215
Query: 122 DAIKKKFQGIKHECQANGPEDLNRACIAEKLGGSLIVAFEGCPV 165
DAIKKKF QANGPEDLN ACIAEKL G LI AFEGC V
Sbjct: 216 DAIKKKF-------QANGPEDLNWACIAEKLDGYLIAAFEGCSV 252
>gi|169165465 PREDICTED: similar to Destrin (actin depolymerizing
factor) [Homo sapiens]
Length = 252
Score = 244 bits (624), Expect = 2e-65
Identities = 128/164 (78%), Positives = 134/164 (81%), Gaps = 8/164 (4%)
Query: 3 SGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGV 62
SGVQVADEVC IF D+KV KCST EEIKKRKK VIFCLSADKKCIIVEEGKEI GD+GV
Sbjct: 96 SGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGV 155
Query: 63 TITDPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSK 121
+IT PFKHFVGMLPEKDC YALYDASFETK+S R + FLWAPEL PLKSKMI+ S K
Sbjct: 156 SITGPFKHFVGMLPEKDCCYALYDASFETKKSGRVLFVCLFLWAPELPPLKSKMIFTSCK 215
Query: 122 DAIKKKFQGIKHECQANGPEDLNRACIAEKLGGSLIVAFEGCPV 165
DAIKKKF QANGPEDLN ACIAEKL G LI AFEGC V
Sbjct: 216 DAIKKKF-------QANGPEDLNWACIAEKLDGYLIAAFEGCSV 252
>gi|113415024 PREDICTED: similar to destrin [Homo sapiens]
Length = 199
Score = 244 bits (624), Expect = 2e-65
Identities = 128/164 (78%), Positives = 134/164 (81%), Gaps = 8/164 (4%)
Query: 3 SGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGV 62
SGVQVADEVC IF D+KV KCST EEIKKRKK VIFCLSADKKCIIVEEGKEI GD+GV
Sbjct: 43 SGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGV 102
Query: 63 TITDPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSK 121
+IT PFKHFVGMLPEKDC YALYDASFETK+S R + FLWAPEL PLKSKMI+ S K
Sbjct: 103 SITGPFKHFVGMLPEKDCCYALYDASFETKKSGRVLFVCLFLWAPELPPLKSKMIFTSCK 162
Query: 122 DAIKKKFQGIKHECQANGPEDLNRACIAEKLGGSLIVAFEGCPV 165
DAIKKKF QANGPEDLN ACIAEKL G LI AFEGC V
Sbjct: 163 DAIKKKF-------QANGPEDLNWACIAEKLDGYLIAAFEGCSV 199
>gi|5031635 cofilin 1 (non-muscle) [Homo sapiens]
Length = 166
Score = 237 bits (605), Expect = 3e-63
Identities = 118/166 (71%), Positives = 139/166 (83%), Gaps = 1/166 (0%)
Query: 1 MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDV 60
MASGV V+D V ++F DMKVRK STPEE+KKRKKAV+FCLS DKK II+EEGKEILVGDV
Sbjct: 1 MASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDV 60
Query: 61 GVTITDPFKHFVGMLPEKDCRYALYDASFETKESRKEELMFFLWAPELAPLKSKMIYASS 120
G T+ DP+ FV MLP+KDCRYALYDA++ETKES+KE+L+F WAPE APLKSKMIYASS
Sbjct: 61 GQTVDDPYATFVKMLPDKDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASS 120
Query: 121 KDAIKKKFQGIKHECQANGPEDLNRAC-IAEKLGGSLIVAFEGCPV 165
KDAIKKK GIKHE QAN E++ C +AEKLGGS +++ EG P+
Sbjct: 121 KDAIKKKLTGIKHELQANCYEEVKDRCTLAEKLGGSAVISLEGKPL 166
>gi|14719392 cofilin 2 [Homo sapiens]
Length = 166
Score = 230 bits (586), Expect = 5e-61
Identities = 114/166 (68%), Positives = 138/166 (83%), Gaps = 1/166 (0%)
Query: 1 MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDV 60
MASGV V DEV ++F DMKVRK ST EEIKKRKKAV+FCLS DK+ IIVEE K+ILVGD+
Sbjct: 1 MASGVTVNDEVIKVFNDMKVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDI 60
Query: 61 GVTITDPFKHFVGMLPEKDCRYALYDASFETKESRKEELMFFLWAPELAPLKSKMIYASS 120
G T+ DP+ FV +LP DCRYALYDA++ETKES+KE+L+F WAPE APLKSKMIYASS
Sbjct: 61 GDTVEDPYTSFVKLLPLNDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASS 120
Query: 121 KDAIKKKFQGIKHECQANGPEDL-NRACIAEKLGGSLIVAFEGCPV 165
KDAIKKKF GIKHE Q NG +D+ +R+ + EKLGG+++V+ EG P+
Sbjct: 121 KDAIKKKFTGIKHEWQVNGLDDIKDRSTLGEKLGGNVVVSLEGKPL 166
>gi|33946278 cofilin 2 [Homo sapiens]
Length = 166
Score = 230 bits (586), Expect = 5e-61
Identities = 114/166 (68%), Positives = 138/166 (83%), Gaps = 1/166 (0%)
Query: 1 MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDV 60
MASGV V DEV ++F DMKVRK ST EEIKKRKKAV+FCLS DK+ IIVEE K+ILVGD+
Sbjct: 1 MASGVTVNDEVIKVFNDMKVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDI 60
Query: 61 GVTITDPFKHFVGMLPEKDCRYALYDASFETKESRKEELMFFLWAPELAPLKSKMIYASS 120
G T+ DP+ FV +LP DCRYALYDA++ETKES+KE+L+F WAPE APLKSKMIYASS
Sbjct: 61 GDTVEDPYTSFVKLLPLNDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASS 120
Query: 121 KDAIKKKFQGIKHECQANGPEDL-NRACIAEKLGGSLIVAFEGCPV 165
KDAIKKKF GIKHE Q NG +D+ +R+ + EKLGG+++V+ EG P+
Sbjct: 121 KDAIKKKFTGIKHEWQVNGLDDIKDRSTLGEKLGGNVVVSLEGKPL 166
>gi|239754918 PREDICTED: similar to destrin [Homo sapiens]
Length = 103
Score = 195 bits (495), Expect = 2e-50
Identities = 96/103 (93%), Positives = 98/103 (95%)
Query: 1 MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDV 60
MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCL AD+KCIIVEEGKEILVGDV
Sbjct: 1 MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDV 60
Query: 61 GVTITDPFKHFVGMLPEKDCRYALYDASFETKESRKEELMFFL 103
GVTIT PFKHFVGMLPEKDCR ALYDASFETKES EEL+FFL
Sbjct: 61 GVTITGPFKHFVGMLPEKDCRCALYDASFETKESSTEELIFFL 103
>gi|239749458 PREDICTED: similar to destrin [Homo sapiens]
Length = 103
Score = 195 bits (495), Expect = 2e-50
Identities = 96/103 (93%), Positives = 98/103 (95%)
Query: 1 MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDV 60
MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCL AD+KCIIVEEGKEILVGDV
Sbjct: 1 MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDV 60
Query: 61 GVTITDPFKHFVGMLPEKDCRYALYDASFETKESRKEELMFFL 103
GVTIT PFKHFVGMLPEKDCR ALYDASFETKES EEL+FFL
Sbjct: 61 GVTITGPFKHFVGMLPEKDCRCALYDASFETKESSTEELIFFL 103
>gi|239743590 PREDICTED: hypothetical protein XP_002342890 [Homo
sapiens]
Length = 103
Score = 195 bits (495), Expect = 2e-50
Identities = 96/103 (93%), Positives = 98/103 (95%)
Query: 1 MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDV 60
MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCL AD+KCIIVEEGKEILVGDV
Sbjct: 1 MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDV 60
Query: 61 GVTITDPFKHFVGMLPEKDCRYALYDASFETKESRKEELMFFL 103
GVTIT PFKHFVGMLPEKDCR ALYDASFETKES EEL+FFL
Sbjct: 61 GVTITGPFKHFVGMLPEKDCRCALYDASFETKESSTEELIFFL 103
>gi|6005846 twinfilin-like protein [Homo sapiens]
Length = 349
Score = 42.7 bits (99), Expect = 1e-04
Identities = 29/105 (27%), Positives = 58/105 (55%), Gaps = 8/105 (7%)
Query: 48 IVEEGKEILVG----DVGVTITDPFKHFVGMLPEKDCRYALYDASFETKESRKEELMFFL 103
+V E +++++G VG D + + +L + Y LY +++ ++ E +F
Sbjct: 30 VVIEDEQLVLGASQEPVGRWDQDYDRAVLPLLDAQQPCYLLY--RLDSQNAQGFEWLFLA 87
Query: 104 WAPELAPLKSKMIYASSKDAIKKKFQG--IKHECQANGPEDLNRA 146
W+P+ +P++ KM+YA+++ +KK+F G IK E +DL+ A
Sbjct: 88 WSPDNSPVRLKMLYAATRATVKKEFGGGHIKDELFGTVKDDLSFA 132
>gi|40068475 twinfilin 1 [Homo sapiens]
Length = 384
Score = 38.9 bits (89), Expect = 0.002
Identities = 21/73 (28%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 74 MLPEKDCRYALYDASFETKESRKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQG--I 131
+L +K Y L+ +++ ++ E +F W+P+ + ++ KM+YA+++ +KK+F G I
Sbjct: 94 LLEDKQPCYILF--RLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHI 151
Query: 132 KHECQANGPEDLN 144
K E ED++
Sbjct: 152 KDEVFGTVKEDVS 164
>gi|33519475 NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa
precursor [Homo sapiens]
Length = 727
Score = 31.2 bits (69), Expect = 0.43
Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 21/107 (19%)
Query: 27 EEIKKRKKAVIFCLSAD----------KKCIIVEEGKEILVGDVGVTITDPFKHFVGMLP 76
E I+K V+F L AD K C I+ +G GDVG I D +LP
Sbjct: 535 EAIRKNPPKVLFLLGADGGCITRQDLPKDCFIIYQGHH---GDVGAPIADV------ILP 585
Query: 77 EKDCRYALYDASFETKESRKEELMFFLWAPELAPLKSKMIYASSKDA 123
Y A++ E R ++ + P LA K+I A S+ A
Sbjct: 586 --GAAYTEKSATYVNTEGRAQQTKVAVTPPGLAREDWKIIRALSEIA 630
>gi|56121815 ADAM metallopeptidase with thrombospondin type 1 motif,
10 preproprotein [Homo sapiens]
Length = 1103
Score = 28.1 bits (61), Expect = 3.6
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 8 ADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCI 47
ADE CR + +K R+C E + ++CLS +CI
Sbjct: 475 ADEQCRFQHGVKSRQCKYGEVCSE-----LWCLSKSNRCI 509
>gi|31542743 EF-hand domain (C-terminal) containing 2 [Homo sapiens]
Length = 749
Score = 27.7 bits (60), Expect = 4.7
Identities = 14/60 (23%), Positives = 29/60 (48%)
Query: 66 DPFKHFVGMLPEKDCRYALYDASFETKESRKEELMFFLWAPELAPLKSKMIYASSKDAIK 125
D K F+ + C + L+D S R+E ++ + + +K + ++S +DA+K
Sbjct: 217 DTLKQFLQYHGKILCFFCLWDDSVSMFGDRRELILHYFLCDDTIEIKELLPHSSGRDALK 276
>gi|171542821 mitochondrial ubiquitin ligase activator of NFKB 1
[Homo sapiens]
Length = 352
Score = 27.7 bits (60), Expect = 4.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 26 PEEIKKRKKAVIFCLSADKKCIIVEEG 52
PE+ + K A + CLS+ K C+ +E G
Sbjct: 292 PEDRESLKSACVVCLSSFKSCVFLECG 318
>gi|115430239 spectrin, beta, non-erythrocytic 4 isoform sigma5
[Homo sapiens]
Length = 678
Score = 27.7 bits (60), Expect = 4.7
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 9/113 (7%)
Query: 40 LSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPEKDCRYALYDASFETKESRKEEL 99
L A + +E + LVG+ + + + L E R L AS E + +
Sbjct: 145 LQAQTAALPLEPASKELVGERQNAVGERLVRLLEPLQE---RRRLLLASKELHQVAHDLD 201
Query: 100 MFFLWAPELAPLKSKMIYASSKDAIK---KKFQGIKHECQANGP---EDLNRA 146
W E PL + + A++ KK QG++ E QA+GP E L RA
Sbjct: 202 DELAWVQERLPLAMQTERGNGLQAVQQHIKKNQGLRREIQAHGPRLEEVLERA 254
>gi|115430237 spectrin, beta, non-erythrocytic 4 isoform sigma1 [Homo
sapiens]
Length = 2564
Score = 27.7 bits (60), Expect = 4.7
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 9/113 (7%)
Query: 40 LSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPEKDCRYALYDASFETKESRKEEL 99
L A + +E + LVG+ + + + L E R L AS E + +
Sbjct: 1469 LQAQTAALPLEPASKELVGERQNAVGERLVRLLEPLQE---RRRLLLASKELHQVAHDLD 1525
Query: 100 MFFLWAPELAPLKSKMIYASSKDAIK---KKFQGIKHECQANGP---EDLNRA 146
W E PL + + A++ KK QG++ E QA+GP E L RA
Sbjct: 1526 DELAWVQERLPLAMQTERGNGLQAVQQHIKKNQGLRREIQAHGPRLEEVLERA 1578
>gi|64276808 ADAM metallopeptidase with thrombospondin type 1 motif,
6 preproprotein [Homo sapiens]
Length = 1117
Score = 27.3 bits (59), Expect = 6.2
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 8 ADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCI 47
ADE CR Y R+C E ++ ++CLS +C+
Sbjct: 486 ADEQCRFQYGATSRQCKYGEVCRE-----LWCLSKSNRCV 520
>gi|18426913 drebrin 1 isoform b [Homo sapiens]
Length = 651
Score = 26.9 bits (58), Expect = 8.0
Identities = 15/53 (28%), Positives = 23/53 (43%)
Query: 104 WAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLNRACIAEKLGGSL 156
W E P K AS + + FQG+ A+ ED++ I ++L L
Sbjct: 87 WVGEDVPDARKCACASHVAKVAEFFQGVDVIVNASSVEDIDAGAIGQRLSNGL 139
>gi|18426915 drebrin 1 isoform a [Homo sapiens]
Length = 649
Score = 26.9 bits (58), Expect = 8.0
Identities = 15/53 (28%), Positives = 23/53 (43%)
Query: 104 WAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLNRACIAEKLGGSL 156
W E P K AS + + FQG+ A+ ED++ I ++L L
Sbjct: 85 WVGEDVPDARKCACASHVAKVAEFFQGVDVIVNASSVEDIDAGAIGQRLSNGL 137
>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin (with
transmembrane signal), 1 [Homo sapiens]
Length = 3259
Score = 26.9 bits (58), Expect = 8.0
Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 17/118 (14%)
Query: 27 EEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPEKDCRYALYD 86
EE+K++ + F S +K + +EE + L +V P D +
Sbjct: 1672 EEMKEKMRK--FAKSKQQKILELEEENDRLRAEVH--------------PAGDTAKECME 1715
Query: 87 ASFETKESRKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLN 144
+ S KEEL E K + + S KD++ ++ Q +KH+ + N + N
Sbjct: 1716 TLLSSNASMKEELERVKMEYETLSKKFQSLM-SEKDSLSEEVQDLKHQIEGNVSKQAN 1772
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,356,666
Number of Sequences: 37866
Number of extensions: 254893
Number of successful extensions: 481
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 455
Number of HSP's gapped (non-prelim): 23
length of query: 165
length of database: 18,247,518
effective HSP length: 94
effective length of query: 71
effective length of database: 14,688,114
effective search space: 1042856094
effective search space used: 1042856094
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.