Guide to the Human Genome
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Search of human proteins with 56790297

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|56790297 RNA binding motif protein 35A isoform 1 [Homo
sapiens]
         (681 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|56790297 RNA binding motif protein 35A isoform 1 [Homo sapiens]   1383   0.0  
gi|170763525 RNA binding motif protein 35A isoform 2 [Homo sapiens]  1368   0.0  
gi|170763529 RNA binding motif protein 35A isoform 3 [Homo sapiens]  1316   0.0  
gi|170763527 RNA binding motif protein 35A isoform 4 [Homo sapiens]  1228   0.0  
gi|170763533 RNA binding motif protein 35A isoform 5 [Homo sapiens]  1212   0.0  
gi|45935393 RNA binding motif protein 35B [Homo sapiens]              815   0.0  
gi|149193321 G-rich RNA sequence binding factor 1 isoform 1 [Hom...   136   7e-32
gi|74099697 heterogeneous nuclear ribonucleoprotein H2 [Homo sap...   130   4e-30
gi|9624998 heterogeneous nuclear ribonucleoprotein H2 [Homo sapi...   130   4e-30
gi|5031753 heterogeneous nuclear ribonucleoprotein H1 [Homo sapi...   130   5e-30
gi|148470406 heterogeneous nuclear ribonucleoprotein F [Homo sap...   126   6e-29
gi|148470404 heterogeneous nuclear ribonucleoprotein F [Homo sap...   126   6e-29
gi|148470402 heterogeneous nuclear ribonucleoprotein F [Homo sap...   126   6e-29
gi|148470400 heterogeneous nuclear ribonucleoprotein F [Homo sap...   126   6e-29
gi|148470397 heterogeneous nuclear ribonucleoprotein F [Homo sap...   126   6e-29
gi|4826760 heterogeneous nuclear ribonucleoprotein F [Homo sapiens]   126   6e-29
gi|149193319 G-rich RNA sequence binding factor 1 isoform 2 [Hom...   116   8e-26
gi|19923345 RNA binding motif protein 12 [Homo sapiens]               102   2e-21
gi|23510462 RNA binding motif protein 12 [Homo sapiens]               102   2e-21
gi|14141157 heterogeneous nuclear ribonucleoprotein H3 isoform a...    76   9e-14
gi|14141159 heterogeneous nuclear ribonucleoprotein H3 isoform b...    76   9e-14
gi|118722349 RNA binding motif protein 12B [Homo sapiens]              68   3e-11
gi|226497734 RNA binding motif protein 19 [Homo sapiens]               59   1e-08
gi|226497654 RNA binding motif protein 19 [Homo sapiens]               59   1e-08
gi|226497574 RNA binding motif protein 19 [Homo sapiens]               59   1e-08
gi|42475558 SMG-7 homolog isoform 1 [Homo sapiens]                     42   0.001
gi|42476066 SMG-7 homolog isoform 4 [Homo sapiens]                     42   0.001
gi|42476070 SMG-7 homolog isoform 2 [Homo sapiens]                     42   0.001
gi|98986457 host cell factor 1 [Homo sapiens]                          35   0.30 
gi|150417989 cyclin K isoform 1 [Homo sapiens]                         34   0.39 

>gi|56790297 RNA binding motif protein 35A isoform 1 [Homo sapiens]
          Length = 681

 Score = 1383 bits (3580), Expect = 0.0
 Identities = 681/681 (100%), Positives = 681/681 (100%)

Query: 1   MTASPDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLEL 60
           MTASPDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLEL
Sbjct: 1   MTASPDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLEL 60

Query: 61  TEDCKEETKIDVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHP 120
           TEDCKEETKIDVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHP
Sbjct: 61  TEDCKEETKIDVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHP 120

Query: 121 EASKKNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQ 180
           EASKKNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQ
Sbjct: 121 EASKKNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQ 180

Query: 181 VEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQD 240
           VEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQD
Sbjct: 181 VEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQD 240

Query: 241 IARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKA 300
           IARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKA
Sbjct: 241 IARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKA 300

Query: 301 TGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL 360
           TGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL
Sbjct: 301 TGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL 360

Query: 361 FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAP 420
           FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAP
Sbjct: 361 FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAP 420

Query: 421 LIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV 480
           LIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV
Sbjct: 421 LIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV 480

Query: 481 LNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRN 540
           LNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRN
Sbjct: 481 LNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRN 540

Query: 541 GLSPPPCKLPCLSPPSYTFPAPAAVIPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMN 600
           GLSPPPCKLPCLSPPSYTFPAPAAVIPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMN
Sbjct: 541 GLSPPPCKLPCLSPPSYTFPAPAAVIPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMN 600

Query: 601 YTAYYPSPPGSPNSLGYFPTAANLSGVPPQPGTVVRMQGLAYNTGVKEILNFFQGYQYAT 660
           YTAYYPSPPGSPNSLGYFPTAANLSGVPPQPGTVVRMQGLAYNTGVKEILNFFQGYQYAT
Sbjct: 601 YTAYYPSPPGSPNSLGYFPTAANLSGVPPQPGTVVRMQGLAYNTGVKEILNFFQGYQYAT 660

Query: 661 EDGLIHTNDQARTLPKEWVCI 681
           EDGLIHTNDQARTLPKEWVCI
Sbjct: 661 EDGLIHTNDQARTLPKEWVCI 681


>gi|170763525 RNA binding motif protein 35A isoform 2 [Homo sapiens]
          Length = 677

 Score = 1368 bits (3540), Expect = 0.0
 Identities = 677/681 (99%), Positives = 677/681 (99%), Gaps = 4/681 (0%)

Query: 1   MTASPDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLEL 60
           MTASPDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLEL
Sbjct: 1   MTASPDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLEL 60

Query: 61  TEDCKEETKIDVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHP 120
           TEDCKEETKIDVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHP
Sbjct: 61  TEDCKEETKIDVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHP 120

Query: 121 EASKKNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQ 180
           EASKKNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQ
Sbjct: 121 EASKKNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQ 180

Query: 181 VEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQD 240
           VEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQD
Sbjct: 181 VEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQD 240

Query: 241 IARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKA 300
           IARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKA
Sbjct: 241 IARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKA 300

Query: 301 TGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL 360
           TGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL
Sbjct: 301 TGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL 360

Query: 361 FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAP 420
           FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAP
Sbjct: 361 FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAP 420

Query: 421 LIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV 480
           LIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV
Sbjct: 421 LIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV 480

Query: 481 LNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRN 540
           LNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRN
Sbjct: 481 LNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRN 540

Query: 541 GLSPPPCKLPCLSPPSYTFPAPAAVIPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMN 600
           GLSPP    PCLSPPSYTFPAPAAVIPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMN
Sbjct: 541 GLSPP----PCLSPPSYTFPAPAAVIPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMN 596

Query: 601 YTAYYPSPPGSPNSLGYFPTAANLSGVPPQPGTVVRMQGLAYNTGVKEILNFFQGYQYAT 660
           YTAYYPSPPGSPNSLGYFPTAANLSGVPPQPGTVVRMQGLAYNTGVKEILNFFQGYQYAT
Sbjct: 597 YTAYYPSPPGSPNSLGYFPTAANLSGVPPQPGTVVRMQGLAYNTGVKEILNFFQGYQYAT 656

Query: 661 EDGLIHTNDQARTLPKEWVCI 681
           EDGLIHTNDQARTLPKEWVCI
Sbjct: 657 EDGLIHTNDQARTLPKEWVCI 677


>gi|170763529 RNA binding motif protein 35A isoform 3 [Homo sapiens]
          Length = 659

 Score = 1316 bits (3406), Expect = 0.0
 Identities = 653/657 (99%), Positives = 653/657 (99%), Gaps = 4/657 (0%)

Query: 1   MTASPDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLEL 60
           MTASPDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLEL
Sbjct: 1   MTASPDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLEL 60

Query: 61  TEDCKEETKIDVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHP 120
           TEDCKEETKIDVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHP
Sbjct: 61  TEDCKEETKIDVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHP 120

Query: 121 EASKKNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQ 180
           EASKKNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQ
Sbjct: 121 EASKKNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQ 180

Query: 181 VEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQD 240
           VEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQD
Sbjct: 181 VEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQD 240

Query: 241 IARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKA 300
           IARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKA
Sbjct: 241 IARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKA 300

Query: 301 TGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL 360
           TGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL
Sbjct: 301 TGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL 360

Query: 361 FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAP 420
           FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAP
Sbjct: 361 FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAP 420

Query: 421 LIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV 480
           LIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV
Sbjct: 421 LIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV 480

Query: 481 LNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRN 540
           LNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRN
Sbjct: 481 LNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRN 540

Query: 541 GLSPPPCKLPCLSPPSYTFPAPAAVIPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMN 600
           GLSPP    PCLSPPSYTFPAPAAVIPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMN
Sbjct: 541 GLSPP----PCLSPPSYTFPAPAAVIPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMN 596

Query: 601 YTAYYPSPPGSPNSLGYFPTAANLSGVPPQPGTVVRMQGLAYNTGVKEILNFFQGYQ 657
           YTAYYPSPPGSPNSLGYFPTAANLSGVPPQPGTVVRMQGLAYNTGVKEILNFFQGYQ
Sbjct: 597 YTAYYPSPPGSPNSLGYFPTAANLSGVPPQPGTVVRMQGLAYNTGVKEILNFFQGYQ 653


>gi|170763527 RNA binding motif protein 35A isoform 4 [Homo sapiens]
          Length = 608

 Score = 1228 bits (3177), Expect = 0.0
 Identities = 607/607 (100%), Positives = 607/607 (100%)

Query: 1   MTASPDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLEL 60
           MTASPDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLEL
Sbjct: 1   MTASPDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLEL 60

Query: 61  TEDCKEETKIDVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHP 120
           TEDCKEETKIDVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHP
Sbjct: 61  TEDCKEETKIDVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHP 120

Query: 121 EASKKNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQ 180
           EASKKNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQ
Sbjct: 121 EASKKNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQ 180

Query: 181 VEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQD 240
           VEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQD
Sbjct: 181 VEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQD 240

Query: 241 IARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKA 300
           IARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKA
Sbjct: 241 IARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKA 300

Query: 301 TGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL 360
           TGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL
Sbjct: 301 TGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL 360

Query: 361 FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAP 420
           FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAP
Sbjct: 361 FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAP 420

Query: 421 LIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV 480
           LIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV
Sbjct: 421 LIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV 480

Query: 481 LNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRN 540
           LNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRN
Sbjct: 481 LNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRN 540

Query: 541 GLSPPPCKLPCLSPPSYTFPAPAAVIPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMN 600
           GLSPPPCKLPCLSPPSYTFPAPAAVIPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMN
Sbjct: 541 GLSPPPCKLPCLSPPSYTFPAPAAVIPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMN 600

Query: 601 YTAYYPS 607
           YTAYYPS
Sbjct: 601 YTAYYPS 607


>gi|170763533 RNA binding motif protein 35A isoform 5 [Homo sapiens]
          Length = 604

 Score = 1212 bits (3137), Expect = 0.0
 Identities = 603/607 (99%), Positives = 603/607 (99%), Gaps = 4/607 (0%)

Query: 1   MTASPDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLEL 60
           MTASPDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLEL
Sbjct: 1   MTASPDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLEL 60

Query: 61  TEDCKEETKIDVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHP 120
           TEDCKEETKIDVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHP
Sbjct: 61  TEDCKEETKIDVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHP 120

Query: 121 EASKKNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQ 180
           EASKKNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQ
Sbjct: 121 EASKKNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQ 180

Query: 181 VEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQD 240
           VEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQD
Sbjct: 181 VEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQD 240

Query: 241 IARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKA 300
           IARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKA
Sbjct: 241 IARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKA 300

Query: 301 TGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL 360
           TGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL
Sbjct: 301 TGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL 360

Query: 361 FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAP 420
           FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAP
Sbjct: 361 FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAP 420

Query: 421 LIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV 480
           LIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV
Sbjct: 421 LIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV 480

Query: 481 LNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRN 540
           LNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRN
Sbjct: 481 LNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRN 540

Query: 541 GLSPPPCKLPCLSPPSYTFPAPAAVIPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMN 600
           GLSPP    PCLSPPSYTFPAPAAVIPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMN
Sbjct: 541 GLSPP----PCLSPPSYTFPAPAAVIPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMN 596

Query: 601 YTAYYPS 607
           YTAYYPS
Sbjct: 597 YTAYYPS 603


>gi|45935393 RNA binding motif protein 35B [Homo sapiens]
          Length = 717

 Score =  815 bits (2106), Expect = 0.0
 Identities = 418/693 (60%), Positives = 515/693 (74%), Gaps = 18/693 (2%)

Query: 5   PDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLELTEDC 64
           P  LVVLFG TAGA G  LGSDE +LILL W+VV+  +++VG LH+ LVR +   L+  C
Sbjct: 27  PGSLVVLFGATAGALGRDLGSDETDLILLVWQVVEPRSRQVGTLHKSLVRAEAAALSTQC 86

Query: 65  KEETKIDVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHPEASK 124
           +E + +  +SL+ A  LD+ L+QF+Q V+ ++ +  G  + LCTDGQ  +RQ+LHPEAS+
Sbjct: 87  REASGLSADSLARAEPLDKVLQQFSQLVNGDVALLGGGPYMLCTDGQQLLRQVLHPEASR 146

Query: 125 KNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQVEDM 184
           KN++LP+ F+SF+DLR+EF    P +     L VATM + L  E  ++   +G  +V+ M
Sbjct: 147 KNLVLPDMFFSFYDLRREFHMQHPSTCPARDLTVATMAQGLGLETDATEDDFGVWEVKTM 206

Query: 185 GNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQDIARF 244
             +IL ++ EP +  FS PE +  K+E+G CSK +++D  TVVRARGLPWQSSDQD+ARF
Sbjct: 207 VAVILHLLKEPSSQLFSKPEVIKQKYETGPCSKADVVDSETVVRARGLPWQSSDQDVARF 266

Query: 245 FKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGED 304
           FKGLN+A+GG ALCLNAQGRRNGEAL+RFV  E RDLALQRHKHHMG RYIEVYKATGE+
Sbjct: 267 FKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEE 326

Query: 305 FLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY 364
           F+KIAGGTS EVA+FLS+E+QVI+R+RGLPF+A   +V+ F G  CP+TGG EG+LFV +
Sbjct: 327 FVKIAGGTSLEVARFLSREDQVILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRH 386

Query: 365 PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPL 424
           PDGRPTGDAF LFACEE AQ ALR+HK +LGKRYIELFRSTAAEVQQVLNR++S PL+P 
Sbjct: 387 PDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPT 446

Query: 425 PTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ 484
            T P++P+ P    P T  RDC+RLRGLPY ATIEDIL FLGE A DIR HGVHMVLN Q
Sbjct: 447 LTAPLLPI-PFPLAPGTG-RDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQ 504

Query: 485 GRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSP 544
           GRPSGDAFIQM SA+RA  AAQ+CHKK MK+RYVEV  CS EEM+ VLMGGTL R+G+SP
Sbjct: 505 GRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMSP 564

Query: 545 PPCKLPCLSPPSY-TFPAPAAVIPTEAAIYQPSVILNPRALQPS----TAYYPA-GTQLF 598
           PPCKLPCLSPP+Y TF A   +IPTE A   PS  L P A  P+     AYYP   TQL+
Sbjct: 565 PPCKLPCLSPPTYTTFQATPTLIPTETAALYPSSALLPAARVPAAPTPVAYYPGPATQLY 624

Query: 599 MNYTAYYPSPPGSPNSLGYF--PTAANLS---GVPPQPGTVVRMQGLAYNTGVKEILNFF 653
           +NYTAYYPSPP SP ++GY   PTAA  S    V  Q G +VRMQG+ Y  G+K++L+ F
Sbjct: 625 LNYTAYYPSPPVSPTTVGYLTTPTAALASAPTSVLSQSGALVRMQGVPYTAGMKDLLSVF 684

Query: 654 QGYQYATED--GLIHTNDQARTL---PKEWVCI 681
           Q YQ   +D   L+   D  RT+   PKEWVC+
Sbjct: 685 QAYQLPADDYTSLMPVGDPPRTVLQAPKEWVCL 717


>gi|149193321 G-rich RNA sequence binding factor 1 isoform 1 [Homo
           sapiens]
          Length = 480

 Score =  136 bits (342), Expect = 7e-32
 Identities = 102/356 (28%), Positives = 167/356 (46%), Gaps = 60/356 (16%)

Query: 209 KFESGTCSKMELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKG--GAALCLNAQGRRN 266
           ++E       E +DD  ++RA+GLPW  + +D+  FF    I  G  G    LN  G+R 
Sbjct: 134 EYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRR 193

Query: 267 GEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGED---FLKIAGGTSNEVAQFLSKE 323
           G+AL+   SE+    AL++H+ +MG RY+EVY+   ED    +K     S+ V       
Sbjct: 194 GDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVV------ 247

Query: 324 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFV-TYPDGRPTGDAFVLFACEEY 382
           N  +VR+RGLP++   +++V FF     +      I FV  Y   R TG+A+V F   E 
Sbjct: 248 NDGVVRLRGLPYSCNEKDIVDFFAGLNIV-----DITFVMDYRGRRKTGEAYVQFEEPEM 302

Query: 383 AQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIP----------- 431
           A  AL KH++ +G RYIE+F S   EV+  +  +    +   PT   I            
Sbjct: 303 ANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEV 362

Query: 432 ----------------VLPQQFVP----------PTNVRDCIRLRGLPYAATIEDILDFL 465
                            LP++ VP           T+    + +RGLP+ A  +DI++F 
Sbjct: 363 NEDIQPMTAFESEKEIELPKE-VPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFF 421

Query: 466 GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVF 521
                 ++   + M  +  G+ +G+A +  ++ + A +AA    + ++  RY+E+F
Sbjct: 422 ----APLKPVRITMEYSSSGKATGEADVHFETHEDA-VAAMLKDRSHVHHRYIELF 472



 Score = 97.1 bits (240), Expect = 5e-20
 Identities = 58/203 (28%), Positives = 107/203 (52%), Gaps = 25/203 (12%)

Query: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
           ++R +GLP++ T E+V+ FF   C I  G+ GI F+   DG+  GDA +    E+  Q A
Sbjct: 151 LIRAQGLPWSCTMEDVLNFFSD-CRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA 209

Query: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
           L KH+  +G+RY+E++     +V  ++        + + + P++                
Sbjct: 210 LEKHRMYMGQRYVEVYEINNEDVDALMKS------LQVKSSPVVN------------DGV 251

Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGR-PSGDAFIQMKSADRAFMAA 505
           +RLRGLPY+   +DI+DF       +    +  V++++GR  +G+A++Q +  + A  A 
Sbjct: 252 VRLRGLPYSCNEKDIVDFFA----GLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQAL 307

Query: 506 QKCHKKNMKDRYVEVFQCSAEEM 528
            K H++ + +RY+E+F     E+
Sbjct: 308 LK-HREEIGNRYIEIFPSRRNEV 329



 Score = 69.7 bits (169), Expect = 8e-12
 Identities = 36/109 (33%), Positives = 62/109 (56%), Gaps = 1/109 (0%)

Query: 424 LPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNH 483
           LP PP   + P +     +    IR +GLP++ T+ED+L+F  +       +G+H +LN 
Sbjct: 129 LPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNR 188

Query: 484 QGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVL 532
            G+  GDA I+M+S      A +K H+  M  RYVEV++ + E+++ ++
Sbjct: 189 DGKRRGDALIEMESEQDVQKALEK-HRMYMGQRYVEVYEINNEDVDALM 236


>gi|74099697 heterogeneous nuclear ribonucleoprotein H2 [Homo
           sapiens]
          Length = 449

 Score =  130 bits (327), Expect = 4e-30
 Identities = 80/193 (41%), Positives = 108/193 (55%), Gaps = 20/193 (10%)

Query: 226 VVRARGLPWQSSDQDIARFFKGLNIAKG--GAALCLNAQGRRNGEALVRFVSEEHRDLAL 283
           VV+ RGLPW  S  ++ RFF    I  G  G       +GR +GEA V   SEE   LAL
Sbjct: 12  VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71

Query: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340
           ++ +  MG RY+EV+K+   +    LK  G  S + A      N   VR+RGLPF  + E
Sbjct: 72  KKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTA------NDGFVRLRGLPFGCSKE 125

Query: 341 EVVAFFGQHCPITGGKEGILFVTYP---DGRPTGDAFVLFACEEYAQNALRKHKDLLGKR 397
           E+V FF     +  G      +T P    GR TG+AFV FA +E A+ AL+KHK+ +G R
Sbjct: 126 EIVQFFSGLEIVPNG------MTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHR 179

Query: 398 YIELFRSTAAEVQ 410
           YIE+F+S+ AEV+
Sbjct: 180 YIEIFKSSRAEVR 192



 Score =  117 bits (294), Expect = 3e-26
 Identities = 71/202 (35%), Positives = 115/202 (56%), Gaps = 22/202 (10%)

Query: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
           +V++RGLP++ +A+EV+ FF   C I  G  GI F+   +GRP+G+AFV    EE  + A
Sbjct: 12  VVKVRGLPWSCSADEVMRFFSD-CKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLA 70

Query: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
           L+K ++ +G RY+E+F+S + E+  VL            T P          P T     
Sbjct: 71  LKKDRETMGHRYVEVFKSNSVEMDWVLKH----------TGP--------NSPDTANDGF 112

Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
           +RLRGLP+  + E+I+ F      +I  +G+ + ++ QGR +G+AF+Q  S + A  A +
Sbjct: 113 VRLRGLPFGCSKEEIVQFFS--GLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALK 170

Query: 507 KCHKKNMKDRYVEVFQCSAEEM 528
           K HK+ +  RY+E+F+ S  E+
Sbjct: 171 K-HKERIGHRYIEIFKSSRAEV 191



 Score = 65.5 bits (158), Expect = 2e-10
 Identities = 28/86 (32%), Positives = 57/86 (66%), Gaps = 1/86 (1%)

Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
           +++RGLP++ + ++++ F  +      T G+  +   +GRPSG+AF++++S +   +A +
Sbjct: 13  VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALK 72

Query: 507 KCHKKNMKDRYVEVFQCSAEEMNFVL 532
           K  ++ M  RYVEVF+ ++ EM++VL
Sbjct: 73  K-DRETMGHRYVEVFKSNSVEMDWVL 97



 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 5/80 (6%)

Query: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
           V MRGLP+ AT  ++  FF    P+      +     PDGR TG+A V FA  E A  A+
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPMR-----VHIEIGPDGRVTGEADVEFATHEDAVAAM 345

Query: 388 RKHKDLLGKRYIELFRSTAA 407
            K K  +  RY+ELF ++ A
Sbjct: 346 AKDKANMQHRYVELFLNSTA 365



 Score = 50.1 bits (118), Expect = 7e-06
 Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 5/76 (6%)

Query: 446 CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 505
           C+ +RGLPY AT  DI +F     + +    VH+ +   GR +G+A ++  + + A +AA
Sbjct: 290 CVHMRGLPYRATENDIYNFF----SPLNPMRVHIEIGPDGRVTGEADVEFATHEDA-VAA 344

Query: 506 QKCHKKNMKDRYVEVF 521
               K NM+ RYVE+F
Sbjct: 345 MAKDKANMQHRYVELF 360



 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
           V  RGLP+++++ DI  FF  LN  +    + +   GR  GEA V F + E    A+ + 
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPMR--VHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348

Query: 287 KHHMGTRYIEVYKATGEDFLKIAGGTS 313
           K +M  RY+E+       FL    GTS
Sbjct: 349 KANMQHRYVEL-------FLNSTAGTS 368


>gi|9624998 heterogeneous nuclear ribonucleoprotein H2 [Homo
           sapiens]
          Length = 449

 Score =  130 bits (327), Expect = 4e-30
 Identities = 80/193 (41%), Positives = 108/193 (55%), Gaps = 20/193 (10%)

Query: 226 VVRARGLPWQSSDQDIARFFKGLNIAKG--GAALCLNAQGRRNGEALVRFVSEEHRDLAL 283
           VV+ RGLPW  S  ++ RFF    I  G  G       +GR +GEA V   SEE   LAL
Sbjct: 12  VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71

Query: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340
           ++ +  MG RY+EV+K+   +    LK  G  S + A      N   VR+RGLPF  + E
Sbjct: 72  KKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTA------NDGFVRLRGLPFGCSKE 125

Query: 341 EVVAFFGQHCPITGGKEGILFVTYP---DGRPTGDAFVLFACEEYAQNALRKHKDLLGKR 397
           E+V FF     +  G      +T P    GR TG+AFV FA +E A+ AL+KHK+ +G R
Sbjct: 126 EIVQFFSGLEIVPNG------MTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHR 179

Query: 398 YIELFRSTAAEVQ 410
           YIE+F+S+ AEV+
Sbjct: 180 YIEIFKSSRAEVR 192



 Score =  117 bits (294), Expect = 3e-26
 Identities = 71/202 (35%), Positives = 115/202 (56%), Gaps = 22/202 (10%)

Query: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
           +V++RGLP++ +A+EV+ FF   C I  G  GI F+   +GRP+G+AFV    EE  + A
Sbjct: 12  VVKVRGLPWSCSADEVMRFFSD-CKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLA 70

Query: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
           L+K ++ +G RY+E+F+S + E+  VL            T P          P T     
Sbjct: 71  LKKDRETMGHRYVEVFKSNSVEMDWVLKH----------TGP--------NSPDTANDGF 112

Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
           +RLRGLP+  + E+I+ F      +I  +G+ + ++ QGR +G+AF+Q  S + A  A +
Sbjct: 113 VRLRGLPFGCSKEEIVQFFS--GLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALK 170

Query: 507 KCHKKNMKDRYVEVFQCSAEEM 528
           K HK+ +  RY+E+F+ S  E+
Sbjct: 171 K-HKERIGHRYIEIFKSSRAEV 191



 Score = 65.5 bits (158), Expect = 2e-10
 Identities = 28/86 (32%), Positives = 57/86 (66%), Gaps = 1/86 (1%)

Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
           +++RGLP++ + ++++ F  +      T G+  +   +GRPSG+AF++++S +   +A +
Sbjct: 13  VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALK 72

Query: 507 KCHKKNMKDRYVEVFQCSAEEMNFVL 532
           K  ++ M  RYVEVF+ ++ EM++VL
Sbjct: 73  K-DRETMGHRYVEVFKSNSVEMDWVL 97



 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 5/80 (6%)

Query: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
           V MRGLP+ AT  ++  FF    P+      +     PDGR TG+A V FA  E A  A+
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPMR-----VHIEIGPDGRVTGEADVEFATHEDAVAAM 345

Query: 388 RKHKDLLGKRYIELFRSTAA 407
            K K  +  RY+ELF ++ A
Sbjct: 346 AKDKANMQHRYVELFLNSTA 365



 Score = 50.1 bits (118), Expect = 7e-06
 Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 5/76 (6%)

Query: 446 CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 505
           C+ +RGLPY AT  DI +F     + +    VH+ +   GR +G+A ++  + + A +AA
Sbjct: 290 CVHMRGLPYRATENDIYNFF----SPLNPMRVHIEIGPDGRVTGEADVEFATHEDA-VAA 344

Query: 506 QKCHKKNMKDRYVEVF 521
               K NM+ RYVE+F
Sbjct: 345 MAKDKANMQHRYVELF 360



 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
           V  RGLP+++++ DI  FF  LN  +    + +   GR  GEA V F + E    A+ + 
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPMR--VHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348

Query: 287 KHHMGTRYIEVYKATGEDFLKIAGGTS 313
           K +M  RY+E+       FL    GTS
Sbjct: 349 KANMQHRYVEL-------FLNSTAGTS 368


>gi|5031753 heterogeneous nuclear ribonucleoprotein H1 [Homo
           sapiens]
          Length = 449

 Score =  130 bits (326), Expect = 5e-30
 Identities = 79/193 (40%), Positives = 108/193 (55%), Gaps = 20/193 (10%)

Query: 226 VVRARGLPWQSSDQDIARFFKGLNIAKG--GAALCLNAQGRRNGEALVRFVSEEHRDLAL 283
           VV+ RGLPW  S  ++ RFF    I  G  G       +GR +GEA V   SE+   LAL
Sbjct: 12  VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71

Query: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340
           ++ +  MG RY+EV+K+   +    LK  G  S + A      N   VR+RGLPF  + E
Sbjct: 72  KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTA------NDGFVRLRGLPFGCSKE 125

Query: 341 EVVAFFGQHCPITGGKEGILFVTYP---DGRPTGDAFVLFACEEYAQNALRKHKDLLGKR 397
           E+V FF     +  G      +T P    GR TG+AFV FA +E A+ AL+KHK+ +G R
Sbjct: 126 EIVQFFSGLEIVPNG------ITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHR 179

Query: 398 YIELFRSTAAEVQ 410
           YIE+F+S+ AEV+
Sbjct: 180 YIEIFKSSRAEVR 192



 Score =  115 bits (289), Expect = 1e-25
 Identities = 70/202 (34%), Positives = 114/202 (56%), Gaps = 22/202 (10%)

Query: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
           +V++RGLP++ +A+EV  FF   C I  G +GI F+   +GRP+G+AFV    E+  + A
Sbjct: 12  VVKVRGLPWSCSADEVQRFFSD-CKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 70

Query: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
           L+K ++ +G RY+E+F+S   E+  VL            T P          P T     
Sbjct: 71  LKKDRETMGHRYVEVFKSNNVEMDWVLKH----------TGP--------NSPDTANDGF 112

Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
           +RLRGLP+  + E+I+ F      +I  +G+ + ++ QGR +G+AF+Q  S + A  A +
Sbjct: 113 VRLRGLPFGCSKEEIVQFFS--GLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALK 170

Query: 507 KCHKKNMKDRYVEVFQCSAEEM 528
           K HK+ +  RY+E+F+ S  E+
Sbjct: 171 K-HKERIGHRYIEIFKSSRAEV 191



 Score = 62.8 bits (151), Expect = 1e-09
 Identities = 28/86 (32%), Positives = 54/86 (62%), Gaps = 1/86 (1%)

Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
           +++RGLP++ + +++  F  +        G+  +   +GRPSG+AF++++S D   +A +
Sbjct: 13  VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 72

Query: 507 KCHKKNMKDRYVEVFQCSAEEMNFVL 532
           K  ++ M  RYVEVF+ +  EM++VL
Sbjct: 73  K-DRETMGHRYVEVFKSNNVEMDWVL 97



 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 5/80 (6%)

Query: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
           V MRGLP+ AT  ++  FF    P+      +     PDGR TG+A V FA  E A  A+
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEDAVAAM 345

Query: 388 RKHKDLLGKRYIELFRSTAA 407
            K K  +  RY+ELF ++ A
Sbjct: 346 SKDKANMQHRYVELFLNSTA 365



 Score = 50.1 bits (118), Expect = 7e-06
 Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 5/76 (6%)

Query: 446 CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 505
           C+ +RGLPY AT  DI +F     + +    VH+ +   GR +G+A ++  + + A +AA
Sbjct: 290 CVHMRGLPYRATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEFATHEDA-VAA 344

Query: 506 QKCHKKNMKDRYVEVF 521
               K NM+ RYVE+F
Sbjct: 345 MSKDKANMQHRYVELF 360



 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
           V  RGLP+++++ DI  FF  LN  +    + +   GR  GEA V F + E    A+ + 
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 348

Query: 287 KHHMGTRYIEVY 298
           K +M  RY+E++
Sbjct: 349 KANMQHRYVELF 360


>gi|148470406 heterogeneous nuclear ribonucleoprotein F [Homo
           sapiens]
          Length = 415

 Score =  126 bits (317), Expect = 6e-29
 Identities = 80/201 (39%), Positives = 112/201 (55%), Gaps = 18/201 (8%)

Query: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAAL--CLNAQGRRNGEALVRFVSEEHRDLAL 283
           VV+ RGLPW  S +D+  F     I  G A +      +GR++GEA V   SE+   +AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340
           ++ +  MG RYIEV+K+   +    LK +G  S + A      N   VR+RGLPF  T E
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSA------NDGFVRLRGLPFGCTKE 125

Query: 341 EVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 400
           E+V FF     +     GI     P+G+ TG+AFV FA +E A+ AL KHK+ +G RYIE
Sbjct: 126 EIVQFFSG---LEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIE 182

Query: 401 LFRSTAAEVQQVLNRFSSAPL 421
           +F+S+  EV+     +S  PL
Sbjct: 183 VFKSSQEEVRS----YSDPPL 199



 Score =  104 bits (260), Expect = 2e-22
 Identities = 98/340 (28%), Positives = 149/340 (43%), Gaps = 55/340 (16%)

Query: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
           +V++RGLP++ + E+V  F    C I  G  G+ F+   +GR +G+AFV    E+  + A
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70

Query: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
           L+K ++ +G RYIE+F+S   E+  VL             P         FV        
Sbjct: 71  LKKDRESMGHRYIEVFKSHRTEMDWVLKHSG---------PNSADSANDGFV-------- 113

Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
            RLRGLP+  T E+I+ F      +I  +G+ + ++ +G+ +G+AF+Q  S + A  A  
Sbjct: 114 -RLRGLPFGCTKEEIVQFFS--GLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 170

Query: 507 KCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSPPPCKLPCLSPPS-YTFPAPAAV 565
           K HK+ +  RY+EVF+ S EE+              S PP K   +  P  Y  P  A  
Sbjct: 171 K-HKERIGHRYIEVFKSSQEEV-----------RSYSDPPLKFMSVQRPGPYDRPGTAR- 217

Query: 566 IPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMNYTAYYPSPPGSPNSLGYFPTAANLS 625
                 I + + +   R    ST Y   G + +   +  Y    G    L     +  LS
Sbjct: 218 --RYIGIVKQAGLERMRPGAYSTGY--GGYEEYSGLSDGY----GFTTDLFGRDLSYCLS 269

Query: 626 G------------VPPQPGTVVRMQGLAYNTGVKEILNFF 653
           G            V    G  V M+GL Y     +I NFF
Sbjct: 270 GMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFF 309



 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 21/156 (13%)

Query: 159 ATMTEYLNFEKSSSVSRYGASQVEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKM 218
           A  T Y  +E+ S +S       +  G  +   +S  Y+HR+ D E    +  +G C   
Sbjct: 235 AYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSE-FTVQSTTGHC--- 290

Query: 219 ELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEH 278
                   V  RGLP+++++ DI  FF  LN  +    + +   GR  GEA V F + E 
Sbjct: 291 --------VHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEE 340

Query: 279 RDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSN 314
              A+ + + +M  RYIE+       FL    G SN
Sbjct: 341 AVAAMSKDRANMQHRYIEL-------FLNSTTGASN 369



 Score = 50.8 bits (120), Expect = 4e-06
 Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 5/75 (6%)

Query: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
           V MRGLP+ AT  ++  FF    P+      +     PDGR TG+A V FA  E A  A+
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEEAVAAM 345

Query: 388 RKHKDLLGKRYIELF 402
            K +  +  RYIELF
Sbjct: 346 SKDRANMQHRYIELF 360



 Score = 50.4 bits (119), Expect = 5e-06
 Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 5/86 (5%)

Query: 436 QFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
           +F   +    C+ +RGLPY AT  DI +F     + +    VH+ +   GR +G+A ++ 
Sbjct: 280 EFTVQSTTGHCVHMRGLPYKATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEF 335

Query: 496 KSADRAFMAAQKCHKKNMKDRYVEVF 521
            + + A +AA    + NM+ RY+E+F
Sbjct: 336 ATHEEA-VAAMSKDRANMQHRYIELF 360


>gi|148470404 heterogeneous nuclear ribonucleoprotein F [Homo
           sapiens]
          Length = 415

 Score =  126 bits (317), Expect = 6e-29
 Identities = 80/201 (39%), Positives = 112/201 (55%), Gaps = 18/201 (8%)

Query: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAAL--CLNAQGRRNGEALVRFVSEEHRDLAL 283
           VV+ RGLPW  S +D+  F     I  G A +      +GR++GEA V   SE+   +AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340
           ++ +  MG RYIEV+K+   +    LK +G  S + A      N   VR+RGLPF  T E
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSA------NDGFVRLRGLPFGCTKE 125

Query: 341 EVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 400
           E+V FF     +     GI     P+G+ TG+AFV FA +E A+ AL KHK+ +G RYIE
Sbjct: 126 EIVQFFSG---LEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIE 182

Query: 401 LFRSTAAEVQQVLNRFSSAPL 421
           +F+S+  EV+     +S  PL
Sbjct: 183 VFKSSQEEVRS----YSDPPL 199



 Score =  104 bits (260), Expect = 2e-22
 Identities = 98/340 (28%), Positives = 149/340 (43%), Gaps = 55/340 (16%)

Query: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
           +V++RGLP++ + E+V  F    C I  G  G+ F+   +GR +G+AFV    E+  + A
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70

Query: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
           L+K ++ +G RYIE+F+S   E+  VL             P         FV        
Sbjct: 71  LKKDRESMGHRYIEVFKSHRTEMDWVLKHSG---------PNSADSANDGFV-------- 113

Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
            RLRGLP+  T E+I+ F      +I  +G+ + ++ +G+ +G+AF+Q  S + A  A  
Sbjct: 114 -RLRGLPFGCTKEEIVQFFS--GLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 170

Query: 507 KCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSPPPCKLPCLSPPS-YTFPAPAAV 565
           K HK+ +  RY+EVF+ S EE+              S PP K   +  P  Y  P  A  
Sbjct: 171 K-HKERIGHRYIEVFKSSQEEV-----------RSYSDPPLKFMSVQRPGPYDRPGTAR- 217

Query: 566 IPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMNYTAYYPSPPGSPNSLGYFPTAANLS 625
                 I + + +   R    ST Y   G + +   +  Y    G    L     +  LS
Sbjct: 218 --RYIGIVKQAGLERMRPGAYSTGY--GGYEEYSGLSDGY----GFTTDLFGRDLSYCLS 269

Query: 626 G------------VPPQPGTVVRMQGLAYNTGVKEILNFF 653
           G            V    G  V M+GL Y     +I NFF
Sbjct: 270 GMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFF 309



 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 21/156 (13%)

Query: 159 ATMTEYLNFEKSSSVSRYGASQVEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKM 218
           A  T Y  +E+ S +S       +  G  +   +S  Y+HR+ D E    +  +G C   
Sbjct: 235 AYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSE-FTVQSTTGHC--- 290

Query: 219 ELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEH 278
                   V  RGLP+++++ DI  FF  LN  +    + +   GR  GEA V F + E 
Sbjct: 291 --------VHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEE 340

Query: 279 RDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSN 314
              A+ + + +M  RYIE+       FL    G SN
Sbjct: 341 AVAAMSKDRANMQHRYIEL-------FLNSTTGASN 369



 Score = 50.8 bits (120), Expect = 4e-06
 Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 5/75 (6%)

Query: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
           V MRGLP+ AT  ++  FF    P+      +     PDGR TG+A V FA  E A  A+
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEEAVAAM 345

Query: 388 RKHKDLLGKRYIELF 402
            K +  +  RYIELF
Sbjct: 346 SKDRANMQHRYIELF 360



 Score = 50.4 bits (119), Expect = 5e-06
 Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 5/86 (5%)

Query: 436 QFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
           +F   +    C+ +RGLPY AT  DI +F     + +    VH+ +   GR +G+A ++ 
Sbjct: 280 EFTVQSTTGHCVHMRGLPYKATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEF 335

Query: 496 KSADRAFMAAQKCHKKNMKDRYVEVF 521
            + + A +AA    + NM+ RY+E+F
Sbjct: 336 ATHEEA-VAAMSKDRANMQHRYIELF 360


>gi|148470402 heterogeneous nuclear ribonucleoprotein F [Homo
           sapiens]
          Length = 415

 Score =  126 bits (317), Expect = 6e-29
 Identities = 80/201 (39%), Positives = 112/201 (55%), Gaps = 18/201 (8%)

Query: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAAL--CLNAQGRRNGEALVRFVSEEHRDLAL 283
           VV+ RGLPW  S +D+  F     I  G A +      +GR++GEA V   SE+   +AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340
           ++ +  MG RYIEV+K+   +    LK +G  S + A      N   VR+RGLPF  T E
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSA------NDGFVRLRGLPFGCTKE 125

Query: 341 EVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 400
           E+V FF     +     GI     P+G+ TG+AFV FA +E A+ AL KHK+ +G RYIE
Sbjct: 126 EIVQFFSG---LEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIE 182

Query: 401 LFRSTAAEVQQVLNRFSSAPL 421
           +F+S+  EV+     +S  PL
Sbjct: 183 VFKSSQEEVRS----YSDPPL 199



 Score =  104 bits (260), Expect = 2e-22
 Identities = 98/340 (28%), Positives = 149/340 (43%), Gaps = 55/340 (16%)

Query: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
           +V++RGLP++ + E+V  F    C I  G  G+ F+   +GR +G+AFV    E+  + A
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70

Query: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
           L+K ++ +G RYIE+F+S   E+  VL             P         FV        
Sbjct: 71  LKKDRESMGHRYIEVFKSHRTEMDWVLKHSG---------PNSADSANDGFV-------- 113

Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
            RLRGLP+  T E+I+ F      +I  +G+ + ++ +G+ +G+AF+Q  S + A  A  
Sbjct: 114 -RLRGLPFGCTKEEIVQFFS--GLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 170

Query: 507 KCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSPPPCKLPCLSPPS-YTFPAPAAV 565
           K HK+ +  RY+EVF+ S EE+              S PP K   +  P  Y  P  A  
Sbjct: 171 K-HKERIGHRYIEVFKSSQEEV-----------RSYSDPPLKFMSVQRPGPYDRPGTAR- 217

Query: 566 IPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMNYTAYYPSPPGSPNSLGYFPTAANLS 625
                 I + + +   R    ST Y   G + +   +  Y    G    L     +  LS
Sbjct: 218 --RYIGIVKQAGLERMRPGAYSTGY--GGYEEYSGLSDGY----GFTTDLFGRDLSYCLS 269

Query: 626 G------------VPPQPGTVVRMQGLAYNTGVKEILNFF 653
           G            V    G  V M+GL Y     +I NFF
Sbjct: 270 GMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFF 309



 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 21/156 (13%)

Query: 159 ATMTEYLNFEKSSSVSRYGASQVEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKM 218
           A  T Y  +E+ S +S       +  G  +   +S  Y+HR+ D E    +  +G C   
Sbjct: 235 AYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSE-FTVQSTTGHC--- 290

Query: 219 ELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEH 278
                   V  RGLP+++++ DI  FF  LN  +    + +   GR  GEA V F + E 
Sbjct: 291 --------VHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEE 340

Query: 279 RDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSN 314
              A+ + + +M  RYIE+       FL    G SN
Sbjct: 341 AVAAMSKDRANMQHRYIEL-------FLNSTTGASN 369



 Score = 50.8 bits (120), Expect = 4e-06
 Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 5/75 (6%)

Query: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
           V MRGLP+ AT  ++  FF    P+      +     PDGR TG+A V FA  E A  A+
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEEAVAAM 345

Query: 388 RKHKDLLGKRYIELF 402
            K +  +  RYIELF
Sbjct: 346 SKDRANMQHRYIELF 360



 Score = 50.4 bits (119), Expect = 5e-06
 Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 5/86 (5%)

Query: 436 QFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
           +F   +    C+ +RGLPY AT  DI +F     + +    VH+ +   GR +G+A ++ 
Sbjct: 280 EFTVQSTTGHCVHMRGLPYKATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEF 335

Query: 496 KSADRAFMAAQKCHKKNMKDRYVEVF 521
            + + A +AA    + NM+ RY+E+F
Sbjct: 336 ATHEEA-VAAMSKDRANMQHRYIELF 360


>gi|148470400 heterogeneous nuclear ribonucleoprotein F [Homo
           sapiens]
          Length = 415

 Score =  126 bits (317), Expect = 6e-29
 Identities = 80/201 (39%), Positives = 112/201 (55%), Gaps = 18/201 (8%)

Query: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAAL--CLNAQGRRNGEALVRFVSEEHRDLAL 283
           VV+ RGLPW  S +D+  F     I  G A +      +GR++GEA V   SE+   +AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340
           ++ +  MG RYIEV+K+   +    LK +G  S + A      N   VR+RGLPF  T E
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSA------NDGFVRLRGLPFGCTKE 125

Query: 341 EVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 400
           E+V FF     +     GI     P+G+ TG+AFV FA +E A+ AL KHK+ +G RYIE
Sbjct: 126 EIVQFFSG---LEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIE 182

Query: 401 LFRSTAAEVQQVLNRFSSAPL 421
           +F+S+  EV+     +S  PL
Sbjct: 183 VFKSSQEEVRS----YSDPPL 199



 Score =  104 bits (260), Expect = 2e-22
 Identities = 98/340 (28%), Positives = 149/340 (43%), Gaps = 55/340 (16%)

Query: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
           +V++RGLP++ + E+V  F    C I  G  G+ F+   +GR +G+AFV    E+  + A
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70

Query: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
           L+K ++ +G RYIE+F+S   E+  VL             P         FV        
Sbjct: 71  LKKDRESMGHRYIEVFKSHRTEMDWVLKHSG---------PNSADSANDGFV-------- 113

Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
            RLRGLP+  T E+I+ F      +I  +G+ + ++ +G+ +G+AF+Q  S + A  A  
Sbjct: 114 -RLRGLPFGCTKEEIVQFFS--GLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 170

Query: 507 KCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSPPPCKLPCLSPPS-YTFPAPAAV 565
           K HK+ +  RY+EVF+ S EE+              S PP K   +  P  Y  P  A  
Sbjct: 171 K-HKERIGHRYIEVFKSSQEEV-----------RSYSDPPLKFMSVQRPGPYDRPGTAR- 217

Query: 566 IPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMNYTAYYPSPPGSPNSLGYFPTAANLS 625
                 I + + +   R    ST Y   G + +   +  Y    G    L     +  LS
Sbjct: 218 --RYIGIVKQAGLERMRPGAYSTGY--GGYEEYSGLSDGY----GFTTDLFGRDLSYCLS 269

Query: 626 G------------VPPQPGTVVRMQGLAYNTGVKEILNFF 653
           G            V    G  V M+GL Y     +I NFF
Sbjct: 270 GMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFF 309



 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 21/156 (13%)

Query: 159 ATMTEYLNFEKSSSVSRYGASQVEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKM 218
           A  T Y  +E+ S +S       +  G  +   +S  Y+HR+ D E    +  +G C   
Sbjct: 235 AYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSE-FTVQSTTGHC--- 290

Query: 219 ELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEH 278
                   V  RGLP+++++ DI  FF  LN  +    + +   GR  GEA V F + E 
Sbjct: 291 --------VHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEE 340

Query: 279 RDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSN 314
              A+ + + +M  RYIE+       FL    G SN
Sbjct: 341 AVAAMSKDRANMQHRYIEL-------FLNSTTGASN 369



 Score = 50.8 bits (120), Expect = 4e-06
 Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 5/75 (6%)

Query: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
           V MRGLP+ AT  ++  FF    P+      +     PDGR TG+A V FA  E A  A+
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEEAVAAM 345

Query: 388 RKHKDLLGKRYIELF 402
            K +  +  RYIELF
Sbjct: 346 SKDRANMQHRYIELF 360



 Score = 50.4 bits (119), Expect = 5e-06
 Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 5/86 (5%)

Query: 436 QFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
           +F   +    C+ +RGLPY AT  DI +F     + +    VH+ +   GR +G+A ++ 
Sbjct: 280 EFTVQSTTGHCVHMRGLPYKATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEF 335

Query: 496 KSADRAFMAAQKCHKKNMKDRYVEVF 521
            + + A +AA    + NM+ RY+E+F
Sbjct: 336 ATHEEA-VAAMSKDRANMQHRYIELF 360


>gi|148470397 heterogeneous nuclear ribonucleoprotein F [Homo
           sapiens]
          Length = 415

 Score =  126 bits (317), Expect = 6e-29
 Identities = 80/201 (39%), Positives = 112/201 (55%), Gaps = 18/201 (8%)

Query: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAAL--CLNAQGRRNGEALVRFVSEEHRDLAL 283
           VV+ RGLPW  S +D+  F     I  G A +      +GR++GEA V   SE+   +AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340
           ++ +  MG RYIEV+K+   +    LK +G  S + A      N   VR+RGLPF  T E
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSA------NDGFVRLRGLPFGCTKE 125

Query: 341 EVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 400
           E+V FF     +     GI     P+G+ TG+AFV FA +E A+ AL KHK+ +G RYIE
Sbjct: 126 EIVQFFSG---LEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIE 182

Query: 401 LFRSTAAEVQQVLNRFSSAPL 421
           +F+S+  EV+     +S  PL
Sbjct: 183 VFKSSQEEVRS----YSDPPL 199



 Score =  104 bits (260), Expect = 2e-22
 Identities = 98/340 (28%), Positives = 149/340 (43%), Gaps = 55/340 (16%)

Query: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
           +V++RGLP++ + E+V  F    C I  G  G+ F+   +GR +G+AFV    E+  + A
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70

Query: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
           L+K ++ +G RYIE+F+S   E+  VL             P         FV        
Sbjct: 71  LKKDRESMGHRYIEVFKSHRTEMDWVLKHSG---------PNSADSANDGFV-------- 113

Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
            RLRGLP+  T E+I+ F      +I  +G+ + ++ +G+ +G+AF+Q  S + A  A  
Sbjct: 114 -RLRGLPFGCTKEEIVQFFS--GLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 170

Query: 507 KCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSPPPCKLPCLSPPS-YTFPAPAAV 565
           K HK+ +  RY+EVF+ S EE+              S PP K   +  P  Y  P  A  
Sbjct: 171 K-HKERIGHRYIEVFKSSQEEV-----------RSYSDPPLKFMSVQRPGPYDRPGTAR- 217

Query: 566 IPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMNYTAYYPSPPGSPNSLGYFPTAANLS 625
                 I + + +   R    ST Y   G + +   +  Y    G    L     +  LS
Sbjct: 218 --RYIGIVKQAGLERMRPGAYSTGY--GGYEEYSGLSDGY----GFTTDLFGRDLSYCLS 269

Query: 626 G------------VPPQPGTVVRMQGLAYNTGVKEILNFF 653
           G            V    G  V M+GL Y     +I NFF
Sbjct: 270 GMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFF 309



 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 21/156 (13%)

Query: 159 ATMTEYLNFEKSSSVSRYGASQVEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKM 218
           A  T Y  +E+ S +S       +  G  +   +S  Y+HR+ D E    +  +G C   
Sbjct: 235 AYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSE-FTVQSTTGHC--- 290

Query: 219 ELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEH 278
                   V  RGLP+++++ DI  FF  LN  +    + +   GR  GEA V F + E 
Sbjct: 291 --------VHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEE 340

Query: 279 RDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSN 314
              A+ + + +M  RYIE+       FL    G SN
Sbjct: 341 AVAAMSKDRANMQHRYIEL-------FLNSTTGASN 369



 Score = 50.8 bits (120), Expect = 4e-06
 Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 5/75 (6%)

Query: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
           V MRGLP+ AT  ++  FF    P+      +     PDGR TG+A V FA  E A  A+
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEEAVAAM 345

Query: 388 RKHKDLLGKRYIELF 402
            K +  +  RYIELF
Sbjct: 346 SKDRANMQHRYIELF 360



 Score = 50.4 bits (119), Expect = 5e-06
 Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 5/86 (5%)

Query: 436 QFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
           +F   +    C+ +RGLPY AT  DI +F     + +    VH+ +   GR +G+A ++ 
Sbjct: 280 EFTVQSTTGHCVHMRGLPYKATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEF 335

Query: 496 KSADRAFMAAQKCHKKNMKDRYVEVF 521
            + + A +AA    + NM+ RY+E+F
Sbjct: 336 ATHEEA-VAAMSKDRANMQHRYIELF 360


>gi|4826760 heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
          Length = 415

 Score =  126 bits (317), Expect = 6e-29
 Identities = 80/201 (39%), Positives = 112/201 (55%), Gaps = 18/201 (8%)

Query: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAAL--CLNAQGRRNGEALVRFVSEEHRDLAL 283
           VV+ RGLPW  S +D+  F     I  G A +      +GR++GEA V   SE+   +AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340
           ++ +  MG RYIEV+K+   +    LK +G  S + A      N   VR+RGLPF  T E
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSA------NDGFVRLRGLPFGCTKE 125

Query: 341 EVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 400
           E+V FF     +     GI     P+G+ TG+AFV FA +E A+ AL KHK+ +G RYIE
Sbjct: 126 EIVQFFSG---LEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIE 182

Query: 401 LFRSTAAEVQQVLNRFSSAPL 421
           +F+S+  EV+     +S  PL
Sbjct: 183 VFKSSQEEVRS----YSDPPL 199



 Score =  104 bits (260), Expect = 2e-22
 Identities = 98/340 (28%), Positives = 149/340 (43%), Gaps = 55/340 (16%)

Query: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
           +V++RGLP++ + E+V  F    C I  G  G+ F+   +GR +G+AFV    E+  + A
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70

Query: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
           L+K ++ +G RYIE+F+S   E+  VL             P         FV        
Sbjct: 71  LKKDRESMGHRYIEVFKSHRTEMDWVLKHSG---------PNSADSANDGFV-------- 113

Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
            RLRGLP+  T E+I+ F      +I  +G+ + ++ +G+ +G+AF+Q  S + A  A  
Sbjct: 114 -RLRGLPFGCTKEEIVQFFS--GLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 170

Query: 507 KCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSPPPCKLPCLSPPS-YTFPAPAAV 565
           K HK+ +  RY+EVF+ S EE+              S PP K   +  P  Y  P  A  
Sbjct: 171 K-HKERIGHRYIEVFKSSQEEV-----------RSYSDPPLKFMSVQRPGPYDRPGTAR- 217

Query: 566 IPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMNYTAYYPSPPGSPNSLGYFPTAANLS 625
                 I + + +   R    ST Y   G + +   +  Y    G    L     +  LS
Sbjct: 218 --RYIGIVKQAGLERMRPGAYSTGY--GGYEEYSGLSDGY----GFTTDLFGRDLSYCLS 269

Query: 626 G------------VPPQPGTVVRMQGLAYNTGVKEILNFF 653
           G            V    G  V M+GL Y     +I NFF
Sbjct: 270 GMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFF 309



 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 21/156 (13%)

Query: 159 ATMTEYLNFEKSSSVSRYGASQVEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKM 218
           A  T Y  +E+ S +S       +  G  +   +S  Y+HR+ D E    +  +G C   
Sbjct: 235 AYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSE-FTVQSTTGHC--- 290

Query: 219 ELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEH 278
                   V  RGLP+++++ DI  FF  LN  +    + +   GR  GEA V F + E 
Sbjct: 291 --------VHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEE 340

Query: 279 RDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSN 314
              A+ + + +M  RYIE+       FL    G SN
Sbjct: 341 AVAAMSKDRANMQHRYIEL-------FLNSTTGASN 369



 Score = 50.8 bits (120), Expect = 4e-06
 Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 5/75 (6%)

Query: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
           V MRGLP+ AT  ++  FF    P+      +     PDGR TG+A V FA  E A  A+
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEEAVAAM 345

Query: 388 RKHKDLLGKRYIELF 402
            K +  +  RYIELF
Sbjct: 346 SKDRANMQHRYIELF 360



 Score = 50.4 bits (119), Expect = 5e-06
 Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 5/86 (5%)

Query: 436 QFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
           +F   +    C+ +RGLPY AT  DI +F     + +    VH+ +   GR +G+A ++ 
Sbjct: 280 EFTVQSTTGHCVHMRGLPYKATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEF 335

Query: 496 KSADRAFMAAQKCHKKNMKDRYVEVF 521
            + + A +AA    + NM+ RY+E+F
Sbjct: 336 ATHEEA-VAAMSKDRANMQHRYIELF 360


>gi|149193319 G-rich RNA sequence binding factor 1 isoform 2 [Homo
           sapiens]
          Length = 318

 Score =  116 bits (290), Expect = 8e-26
 Identities = 92/326 (28%), Positives = 150/326 (46%), Gaps = 60/326 (18%)

Query: 239 QDIARFFKGLNIAKG--GAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIE 296
           +D+  FF    I  G  G    LN  G+R G+AL+   SE+    AL++H+ +MG RY+E
Sbjct: 2   EDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 61

Query: 297 VYKATGED---FLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPIT 353
           VY+   ED    +K     S+ V       N  +VR+RGLP++   +++V FF     + 
Sbjct: 62  VYEINNEDVDALMKSLQVKSSPVV------NDGVVRLRGLPYSCNEKDIVDFFAGLNIV- 114

Query: 354 GGKEGILFV-TYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
                I FV  Y   R TG+A+V F   E A  AL KH++ +G RYIE+F S   EV+  
Sbjct: 115 ----DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 170

Query: 413 LNRFSSAPLIPLPTPPIIP---------------------------VLPQQFVP------ 439
           +  +    +   PT   I                             LP++ VP      
Sbjct: 171 VGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKE-VPEKLPEA 229

Query: 440 ----PTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
                T+    + +RGLP+ A  +DI++F       ++   + M  +  G+ +G+A +  
Sbjct: 230 ADFGTTSSLHFVHMRGLPFQANAQDIINFF----APLKPVRITMEYSSSGKATGEADVHF 285

Query: 496 KSADRAFMAAQKCHKKNMKDRYVEVF 521
           ++ + A +AA    + ++  RY+E+F
Sbjct: 286 ETHEDA-VAAMLKDRSHVHHRYIELF 310



 Score = 84.3 bits (207), Expect = 3e-16
 Identities = 53/190 (27%), Positives = 97/190 (51%), Gaps = 25/190 (13%)

Query: 340 EEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYI 399
           E+V+ FF   C I  G+ GI F+   DG+  GDA +    E+  Q AL KH+  +G+RY+
Sbjct: 2   EDVLNFFSD-CRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYV 60

Query: 400 ELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIE 459
           E++     +V  ++        + + + P++                +RLRGLPY+   +
Sbjct: 61  EVYEINNEDVDALMKS------LQVKSSPVVN------------DGVVRLRGLPYSCNEK 102

Query: 460 DILDFLGEFATDIRTHGVHMVLNHQGR-PSGDAFIQMKSADRAFMAAQKCHKKNMKDRYV 518
           DI+DF       +    +  V++++GR  +G+A++Q +  + A  A  K H++ + +RY+
Sbjct: 103 DIVDFFA----GLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLK-HREEIGNRYI 157

Query: 519 EVFQCSAEEM 528
           E+F     E+
Sbjct: 158 EIFPSRRNEV 167



 Score = 80.5 bits (197), Expect = 5e-15
 Identities = 68/238 (28%), Positives = 99/238 (41%), Gaps = 59/238 (24%)

Query: 217 KMELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRR-NGEALVRFVS 275
           K   + ++ VVR RGLP+  +++DI  FF GLNI        ++ +GRR  GEA V+F  
Sbjct: 80  KSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIV--DITFVMDYRGRRKTGEAYVQFEE 137

Query: 276 EEHRDLALQRHKHHMGTRYIEVYKA----------------------------------- 300
            E  + AL +H+  +G RYIE++ +                                   
Sbjct: 138 PEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEE 197

Query: 301 --TGEDFLKIAGGTSN--------------EVAQFLSKENQVIVRMRGLPFTATAEEVVA 344
               ED   +    S               E A F +  +   V MRGLPF A A++++ 
Sbjct: 198 HEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIIN 257

Query: 345 FFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 402
           FF    P+      I       G+ TG+A V F   E A  A+ K +  +  RYIELF
Sbjct: 258 FFAPLKPVR-----ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 310



 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 25/75 (33%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 458 IEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRY 517
           +ED+L+F  +       +G+H +LN  G+  GDA I+M+S      A +K H+  M  RY
Sbjct: 1   MEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEK-HRMYMGQRY 59

Query: 518 VEVFQCSAEEMNFVL 532
           VEV++ + E+++ ++
Sbjct: 60  VEVYEINNEDVDALM 74



 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 8/96 (8%)

Query: 203 PERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQ 262
           PE++    + GT S +        V  RGLP+Q++ QDI  FF  L   +    +  ++ 
Sbjct: 223 PEKLPEAADFGTTSSLHF------VHMRGLPFQANAQDIINFFAPLKPVR--ITMEYSSS 274

Query: 263 GRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVY 298
           G+  GEA V F + E    A+ + + H+  RYIE++
Sbjct: 275 GKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 310


>gi|19923345 RNA binding motif protein 12 [Homo sapiens]
          Length = 932

 Score =  102 bits (253), Expect = 2e-21
 Identities = 88/343 (25%), Positives = 154/343 (44%), Gaps = 57/343 (16%)

Query: 223 DNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLA 282
           D+  V   G+P+ + + D+  FF GL +      L  +  GR NG  LV+F+S +    A
Sbjct: 302 DDLYVSVHGMPFSAMENDVRDFFHGLRV--DAVHLLKDHVGRNNGNGLVKFLSPQDTFEA 359

Query: 283 LQRHKHHMGTRYIEVYKATGEDFLKIAG-----------GTSNEVAQFLSK--------- 322
           L+R++  M  RY+EV  AT   ++   G           G ++   Q L +         
Sbjct: 360 LKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKR 419

Query: 323 -------ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAF 374
                  E    V ++GLPF A  + V+ FF +   +    E  +++ Y P+G+ TG+ F
Sbjct: 420 SRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIV----EDSIYIAYGPNGKATGEGF 475

Query: 375 VLFACEEYAQNALRKHKDLLGKRYIELFRSTAA-------EVQQVLNRFS--SAPLIPLP 425
           V F  E   + AL +HK  +G R+I++   T          +++ L  FS     +I  P
Sbjct: 476 VEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNP 535

Query: 426 TPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQG 485
              +            + + C  +  +P++ T  D+L FL     D   + VH+++++ G
Sbjct: 536 EGDV-----------NSAKVCAHITNIPFSITKMDVLQFLEGIPVD--ENAVHVLVDNNG 582

Query: 486 RPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEM 528
           +  G A +Q K+ D A   +++ H+K +  R   V   + E+M
Sbjct: 583 QGLGQALVQFKNEDDA-RKSERLHRKKLNGREAFVHVVTLEDM 624



 Score = 81.3 bits (199), Expect = 3e-15
 Identities = 110/484 (22%), Positives = 180/484 (37%), Gaps = 88/484 (18%)

Query: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
           V  +GLP+++ ++ +  FFK L+I +    +     G+  GE  V F +E     AL RH
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491

Query: 287 KHHMGTRYIEVYKATGEDFLKIAGGTSNEVAQFLSKENQVIVRMRG-------------L 333
           K +MG R+I+V+  T +  L+        +  F   + ++I+   G             +
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKVCAHITNI 551

Query: 334 PFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDL 393
           PF+ T  +V+ F  +  P+   +  +  +   +G+  G A V F  E+ A+ + R H+  
Sbjct: 552 PFSITKMDVLQFL-EGIPV--DENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKK 608

Query: 394 LGKRYIELFRSTAAEVQQVLN----RFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDCIRL 449
           L  R   +   T  +++++      +      +P+P  P +P +P   +P          
Sbjct: 609 LNGREAFVHVVTLEDMREIEKNPPAQGKKGLKMPVPGNPAVPGMPNAGLPGV-------- 660

Query: 450 RGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCH 509
            GLP A      L   G   + I + G    L   G PS          + AF+      
Sbjct: 661 -GLPSAGLPGAGLPSTGLPGSAITSAG----LPGAGMPSA-GIPSAGGEEHAFLTVGSKE 714

Query: 510 KKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSPPPCKLPCLSPPSYTFPAPAAVIPTE 569
             N                NF    G  N  G   PP   P L   ++    P   +P+ 
Sbjct: 715 ANN------------GPPFNFPGNFGGSNAFG---PPIPPPGLGGGAFGDARPG--MPSV 757

Query: 570 AAIYQPSVILN-------PRALQPSTAYYPAGTQLFMNYTAYYPSPPG----------SP 612
                P + L+       P  L   +  +  G Q F N       PPG          +P
Sbjct: 758 GNSGLPGLGLDVPGFGGGPNNLSGPSG-FGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAP 816

Query: 613 NSLGYFPTAANLSGVPPQPG-------------------TVVRMQGLAYNTGVKEILNFF 653
             LG  P      G  P PG                   TV+++Q + +   + EIL+FF
Sbjct: 817 GHLGGPPAFGPGPGPGPGPGPIHIGGPPGFASSSGKPGPTVIKVQNMPFTVSIDEILDFF 876

Query: 654 QGYQ 657
            GYQ
Sbjct: 877 YGYQ 880



 Score = 50.8 bits (120), Expect = 4e-06
 Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 22/151 (14%)

Query: 421 LIPLPTPPIIPVLPQQFVPPTNVRDC--------IRLRGLPYAATIEDILDFLGEFATDI 472
           L P+   P+ PV P Q    ++V+          + + G+P++A   D+ DF       +
Sbjct: 272 LNPMFLGPLNPVNPIQMNSQSSVKPLPINPDDLYVSVHGMPFSAMENDVRDFFH----GL 327

Query: 473 RTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVL 532
           R   VH++ +H GR +G+  ++  S    F A ++ ++  M  RYVEV    A E  +V 
Sbjct: 328 RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKR-NRMLMIQRYVEV--SPATERQWVA 384

Query: 533 MGG--TLNRN-----GLSPPPCKLPCLSPPS 556
            GG  T  +N        PPP  LP    PS
Sbjct: 385 AGGHITFKQNMGPSGQTHPPPQTLPRSKSPS 415



 Score = 39.3 bits (90), Expect = 0.012
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
           V+R +GLP  +   DI  FF GL I  GG    ++  G   GEA + F ++E   L + R
Sbjct: 4   VIRLQGLPIVAGTMDIRHFFSGLTIPDGG----VHIVGGELGEAFIVFATDEDARLGMMR 59



 Score = 37.7 bits (86), Expect = 0.035
 Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
           I+++ +P+  +I++ILDF   +   +    V +  N +G P+G+A +  +S D A  A  
Sbjct: 858 IKVQNMPFTVSIDEILDFF--YGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVI 915

Query: 507 KCHKKNMKDRYVEV 520
             + + +  R V++
Sbjct: 916 DLNDRPIGSRKVKL 929



 Score = 36.6 bits (83), Expect = 0.079
 Identities = 46/194 (23%), Positives = 72/194 (37%), Gaps = 18/194 (9%)

Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
           IRL+GLP  A   DI  F       I   GVH+V    G   G+AFI   + + A +   
Sbjct: 5   IRLQGLPIVAGTMDIRHFFS--GLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMM 58

Query: 507 KCHKKNMKDRYVEVFQCSAEEMNFV-LMGGTLNRNGLSPPPCKLPCLSPPSYTFPAPAAV 565
           +        +   +     E  N + L         L  PP       PP  +  +    
Sbjct: 59  RTGGTIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPSSGMSSRVN 118

Query: 566 IPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMNYTAYYPSPP-------GSPNSLGYF 618
           +PT  + +      +P  +  +T+ + +   +    TA   + P       GSP      
Sbjct: 119 LPTTVSNFNNP---SPSVVTATTSVHESNKNIQTFSTASVGTAPPNMGASFGSPTFSSTV 175

Query: 619 P-TAANLSGVPPQP 631
           P TA+ ++ VPP P
Sbjct: 176 PSTASPMNTVPPPP 189



 Score = 35.8 bits (81), Expect = 0.13
 Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 11/100 (11%)

Query: 326 VIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQN 385
           V++R++GLP  A   ++  FF       GG   +       G   G+AF++FA +E A+ 
Sbjct: 3   VVIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV-------GGELGEAFIVFATDEDARL 55

Query: 386 ALRKHKDLLGKRYIELFRSTAAEVQQVL----NRFSSAPL 421
            + +    +    + L  S+  E+Q ++     RF +A L
Sbjct: 56  GMMRTGGTIKGSKVTLLLSSKTEMQNMIELSRRRFETANL 95



 Score = 35.8 bits (81), Expect = 0.13
 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 322 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEE 381
           K    +++++ +PFT + +E++ FF  +  I G    +       G PTG+A V F   +
Sbjct: 852 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGS---VCLKYNEKGMPTGEAMVAFESRD 908

Query: 382 YAQNALRKHKDL-LGKRYIEL 401
            A  A+    D  +G R ++L
Sbjct: 909 EATAAVIDLNDRPIGSRKVKL 929


>gi|23510462 RNA binding motif protein 12 [Homo sapiens]
          Length = 932

 Score =  102 bits (253), Expect = 2e-21
 Identities = 88/343 (25%), Positives = 154/343 (44%), Gaps = 57/343 (16%)

Query: 223 DNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLA 282
           D+  V   G+P+ + + D+  FF GL +      L  +  GR NG  LV+F+S +    A
Sbjct: 302 DDLYVSVHGMPFSAMENDVRDFFHGLRV--DAVHLLKDHVGRNNGNGLVKFLSPQDTFEA 359

Query: 283 LQRHKHHMGTRYIEVYKATGEDFLKIAG-----------GTSNEVAQFLSK--------- 322
           L+R++  M  RY+EV  AT   ++   G           G ++   Q L +         
Sbjct: 360 LKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKR 419

Query: 323 -------ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAF 374
                  E    V ++GLPF A  + V+ FF +   +    E  +++ Y P+G+ TG+ F
Sbjct: 420 SRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIV----EDSIYIAYGPNGKATGEGF 475

Query: 375 VLFACEEYAQNALRKHKDLLGKRYIELFRSTAA-------EVQQVLNRFS--SAPLIPLP 425
           V F  E   + AL +HK  +G R+I++   T          +++ L  FS     +I  P
Sbjct: 476 VEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNP 535

Query: 426 TPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQG 485
              +            + + C  +  +P++ T  D+L FL     D   + VH+++++ G
Sbjct: 536 EGDV-----------NSAKVCAHITNIPFSITKMDVLQFLEGIPVD--ENAVHVLVDNNG 582

Query: 486 RPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEM 528
           +  G A +Q K+ D A   +++ H+K +  R   V   + E+M
Sbjct: 583 QGLGQALVQFKNEDDA-RKSERLHRKKLNGREAFVHVVTLEDM 624



 Score = 81.3 bits (199), Expect = 3e-15
 Identities = 110/484 (22%), Positives = 180/484 (37%), Gaps = 88/484 (18%)

Query: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
           V  +GLP+++ ++ +  FFK L+I +    +     G+  GE  V F +E     AL RH
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491

Query: 287 KHHMGTRYIEVYKATGEDFLKIAGGTSNEVAQFLSKENQVIVRMRG-------------L 333
           K +MG R+I+V+  T +  L+        +  F   + ++I+   G             +
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKVCAHITNI 551

Query: 334 PFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDL 393
           PF+ T  +V+ F  +  P+   +  +  +   +G+  G A V F  E+ A+ + R H+  
Sbjct: 552 PFSITKMDVLQFL-EGIPV--DENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKK 608

Query: 394 LGKRYIELFRSTAAEVQQVLN----RFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDCIRL 449
           L  R   +   T  +++++      +      +P+P  P +P +P   +P          
Sbjct: 609 LNGREAFVHVVTLEDMREIEKNPPAQGKKGLKMPVPGNPAVPGMPNAGLPGV-------- 660

Query: 450 RGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCH 509
            GLP A      L   G   + I + G    L   G PS          + AF+      
Sbjct: 661 -GLPSAGLPGAGLPSTGLPGSAITSAG----LPGAGMPSA-GIPSAGGEEHAFLTVGSKE 714

Query: 510 KKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSPPPCKLPCLSPPSYTFPAPAAVIPTE 569
             N                NF    G  N  G   PP   P L   ++    P   +P+ 
Sbjct: 715 ANN------------GPPFNFPGNFGGSNAFG---PPIPPPGLGGGAFGDARPG--MPSV 757

Query: 570 AAIYQPSVILN-------PRALQPSTAYYPAGTQLFMNYTAYYPSPPG----------SP 612
                P + L+       P  L   +  +  G Q F N       PPG          +P
Sbjct: 758 GNSGLPGLGLDVPGFGGGPNNLSGPSG-FGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAP 816

Query: 613 NSLGYFPTAANLSGVPPQPG-------------------TVVRMQGLAYNTGVKEILNFF 653
             LG  P      G  P PG                   TV+++Q + +   + EIL+FF
Sbjct: 817 GHLGGPPAFGPGPGPGPGPGPIHIGGPPGFASSSGKPGPTVIKVQNMPFTVSIDEILDFF 876

Query: 654 QGYQ 657
            GYQ
Sbjct: 877 YGYQ 880



 Score = 50.8 bits (120), Expect = 4e-06
 Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 22/151 (14%)

Query: 421 LIPLPTPPIIPVLPQQFVPPTNVRDC--------IRLRGLPYAATIEDILDFLGEFATDI 472
           L P+   P+ PV P Q    ++V+          + + G+P++A   D+ DF       +
Sbjct: 272 LNPMFLGPLNPVNPIQMNSQSSVKPLPINPDDLYVSVHGMPFSAMENDVRDFFH----GL 327

Query: 473 RTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVL 532
           R   VH++ +H GR +G+  ++  S    F A ++ ++  M  RYVEV    A E  +V 
Sbjct: 328 RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKR-NRMLMIQRYVEV--SPATERQWVA 384

Query: 533 MGG--TLNRN-----GLSPPPCKLPCLSPPS 556
            GG  T  +N        PPP  LP    PS
Sbjct: 385 AGGHITFKQNMGPSGQTHPPPQTLPRSKSPS 415



 Score = 39.3 bits (90), Expect = 0.012
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
           V+R +GLP  +   DI  FF GL I  GG    ++  G   GEA + F ++E   L + R
Sbjct: 4   VIRLQGLPIVAGTMDIRHFFSGLTIPDGG----VHIVGGELGEAFIVFATDEDARLGMMR 59



 Score = 37.7 bits (86), Expect = 0.035
 Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
           I+++ +P+  +I++ILDF   +   +    V +  N +G P+G+A +  +S D A  A  
Sbjct: 858 IKVQNMPFTVSIDEILDFF--YGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVI 915

Query: 507 KCHKKNMKDRYVEV 520
             + + +  R V++
Sbjct: 916 DLNDRPIGSRKVKL 929



 Score = 36.6 bits (83), Expect = 0.079
 Identities = 46/194 (23%), Positives = 72/194 (37%), Gaps = 18/194 (9%)

Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
           IRL+GLP  A   DI  F       I   GVH+V    G   G+AFI   + + A +   
Sbjct: 5   IRLQGLPIVAGTMDIRHFFS--GLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMM 58

Query: 507 KCHKKNMKDRYVEVFQCSAEEMNFV-LMGGTLNRNGLSPPPCKLPCLSPPSYTFPAPAAV 565
           +        +   +     E  N + L         L  PP       PP  +  +    
Sbjct: 59  RTGGTIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPSSGMSSRVN 118

Query: 566 IPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMNYTAYYPSPP-------GSPNSLGYF 618
           +PT  + +      +P  +  +T+ + +   +    TA   + P       GSP      
Sbjct: 119 LPTTVSNFNNP---SPSVVTATTSVHESNKNIQTFSTASVGTAPPNMGASFGSPTFSSTV 175

Query: 619 P-TAANLSGVPPQP 631
           P TA+ ++ VPP P
Sbjct: 176 PSTASPMNTVPPPP 189



 Score = 35.8 bits (81), Expect = 0.13
 Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 11/100 (11%)

Query: 326 VIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQN 385
           V++R++GLP  A   ++  FF       GG   +       G   G+AF++FA +E A+ 
Sbjct: 3   VVIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV-------GGELGEAFIVFATDEDARL 55

Query: 386 ALRKHKDLLGKRYIELFRSTAAEVQQVL----NRFSSAPL 421
            + +    +    + L  S+  E+Q ++     RF +A L
Sbjct: 56  GMMRTGGTIKGSKVTLLLSSKTEMQNMIELSRRRFETANL 95



 Score = 35.8 bits (81), Expect = 0.13
 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 322 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEE 381
           K    +++++ +PFT + +E++ FF  +  I G    +       G PTG+A V F   +
Sbjct: 852 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGS---VCLKYNEKGMPTGEAMVAFESRD 908

Query: 382 YAQNALRKHKDL-LGKRYIEL 401
            A  A+    D  +G R ++L
Sbjct: 909 EATAAVIDLNDRPIGSRKVKL 929


>gi|14141157 heterogeneous nuclear ribonucleoprotein H3 isoform a
           [Homo sapiens]
          Length = 346

 Score = 76.3 bits (186), Expect = 9e-14
 Identities = 42/83 (50%), Positives = 55/83 (66%), Gaps = 3/83 (3%)

Query: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
           VR+RGLPF  + EE+V FF Q   I     GI       GR TG+AFV FA +E A+NAL
Sbjct: 18  VRLRGLPFGCSKEEIVQFF-QGLEIV--PNGITLTMDYQGRSTGEAFVQFASKEIAENAL 74

Query: 388 RKHKDLLGKRYIELFRSTAAEVQ 410
            KHK+ +G RYIE+FRS+ +E++
Sbjct: 75  GKHKERIGHRYIEIFRSSRSEIK 97



 Score = 73.2 bits (178), Expect = 8e-13
 Identities = 34/75 (45%), Positives = 51/75 (68%)

Query: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
           VR RGLP+  S ++I +FF+GL I   G  L ++ QGR  GEA V+F S+E  + AL +H
Sbjct: 18  VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77

Query: 287 KHHMGTRYIEVYKAT 301
           K  +G RYIE+++++
Sbjct: 78  KERIGHRYIEIFRSS 92



 Score = 59.7 bits (143), Expect = 9e-09
 Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 14/114 (12%)

Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
           +RLRGLP+  + E+I+ F      +I  +G+ + +++QGR +G+AF+Q  S + A  A  
Sbjct: 18  VRLRGLPFGCSKEEIVQFFQ--GLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75

Query: 507 KCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSPPPCKLPCLSPPSYTFP 560
           K HK+ +  RY+E+F+ S  E+            G   PP +L    P  Y  P
Sbjct: 76  K-HKERIGHRYIEIFRSSRSEI-----------KGFYDPPRRLLGQRPGPYDRP 117



 Score = 53.9 bits (128), Expect = 5e-07
 Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
           V  RGLP+++++ DIA FF  LN  +    + + A GR  GEA V FV+ E    A+ + 
Sbjct: 197 VHMRGLPFRATENDIANFFSPLNPIR--VHIDIGADGRATGEADVEFVTHEDAVAAMSKD 254

Query: 287 KHHMGTRYIEVY 298
           K++M  RYIE++
Sbjct: 255 KNNMQHRYIELF 266



 Score = 50.1 bits (118), Expect = 7e-06
 Identities = 32/75 (42%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
           V MRGLPF AT  ++  FF    PI      +      DGR TG+A V F   E A  A+
Sbjct: 197 VHMRGLPFRATENDIANFFSPLNPIR-----VHIDIGADGRATGEADVEFVTHEDAVAAM 251

Query: 388 RKHKDLLGKRYIELF 402
            K K+ +  RYIELF
Sbjct: 252 SKDKNNMQHRYIELF 266



 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 5/75 (6%)

Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
           + +RGLP+ AT  DI +F     + +    VH+ +   GR +G+A ++  + + A +AA 
Sbjct: 197 VHMRGLPFRATENDIANFF----SPLNPIRVHIDIGADGRATGEADVEFVTHEDA-VAAM 251

Query: 507 KCHKKNMKDRYVEVF 521
              K NM+ RY+E+F
Sbjct: 252 SKDKNNMQHRYIELF 266


>gi|14141159 heterogeneous nuclear ribonucleoprotein H3 isoform b
           [Homo sapiens]
          Length = 331

 Score = 76.3 bits (186), Expect = 9e-14
 Identities = 42/83 (50%), Positives = 55/83 (66%), Gaps = 3/83 (3%)

Query: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
           VR+RGLPF  + EE+V FF Q   I     GI       GR TG+AFV FA +E A+NAL
Sbjct: 18  VRLRGLPFGCSKEEIVQFF-QGLEIV--PNGITLTMDYQGRSTGEAFVQFASKEIAENAL 74

Query: 388 RKHKDLLGKRYIELFRSTAAEVQ 410
            KHK+ +G RYIE+FRS+ +E++
Sbjct: 75  GKHKERIGHRYIEIFRSSRSEIK 97



 Score = 73.2 bits (178), Expect = 8e-13
 Identities = 34/75 (45%), Positives = 51/75 (68%)

Query: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
           VR RGLP+  S ++I +FF+GL I   G  L ++ QGR  GEA V+F S+E  + AL +H
Sbjct: 18  VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77

Query: 287 KHHMGTRYIEVYKAT 301
           K  +G RYIE+++++
Sbjct: 78  KERIGHRYIEIFRSS 92



 Score = 59.7 bits (143), Expect = 9e-09
 Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 14/114 (12%)

Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
           +RLRGLP+  + E+I+ F      +I  +G+ + +++QGR +G+AF+Q  S + A  A  
Sbjct: 18  VRLRGLPFGCSKEEIVQFFQ--GLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75

Query: 507 KCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSPPPCKLPCLSPPSYTFP 560
           K HK+ +  RY+E+F+ S  E+            G   PP +L    P  Y  P
Sbjct: 76  K-HKERIGHRYIEIFRSSRSEI-----------KGFYDPPRRLLGQRPGPYDRP 117



 Score = 53.9 bits (128), Expect = 5e-07
 Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
           V  RGLP+++++ DIA FF  LN  +    + + A GR  GEA V FV+ E    A+ + 
Sbjct: 182 VHMRGLPFRATENDIANFFSPLNPIR--VHIDIGADGRATGEADVEFVTHEDAVAAMSKD 239

Query: 287 KHHMGTRYIEVY 298
           K++M  RYIE++
Sbjct: 240 KNNMQHRYIELF 251



 Score = 50.1 bits (118), Expect = 7e-06
 Identities = 32/75 (42%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
           V MRGLPF AT  ++  FF    PI      +      DGR TG+A V F   E A  A+
Sbjct: 182 VHMRGLPFRATENDIANFFSPLNPIR-----VHIDIGADGRATGEADVEFVTHEDAVAAM 236

Query: 388 RKHKDLLGKRYIELF 402
            K K+ +  RYIELF
Sbjct: 237 SKDKNNMQHRYIELF 251



 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 5/75 (6%)

Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
           + +RGLP+ AT  DI +F     + +    VH+ +   GR +G+A ++  + + A +AA 
Sbjct: 182 VHMRGLPFRATENDIANFF----SPLNPIRVHIDIGADGRATGEADVEFVTHEDA-VAAM 236

Query: 507 KCHKKNMKDRYVEVF 521
              K NM+ RY+E+F
Sbjct: 237 SKDKNNMQHRYIELF 251


>gi|118722349 RNA binding motif protein 12B [Homo sapiens]
          Length = 1001

 Score = 67.8 bits (164), Expect = 3e-11
 Identities = 83/399 (20%), Positives = 163/399 (40%), Gaps = 58/399 (14%)

Query: 159 ATMTEYLNFEKSSSVSR----YGASQVEDMGNIILAMISEPYNHRFSDPERVNYKFESGT 214
           A M + +  +++  V R     G S V+ + N I ++  E  N  +      +  F +  
Sbjct: 77  AEMQKTIEMKRTDRVGRGRPGSGTSGVDSLSNFIESVKEEASNSGYGSSINQDAGFHTNG 136

Query: 215 CSKMELID--------DNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRN 266
                L          +N  +  RGLP+  ++ D+  FF GL +   G     +  GR N
Sbjct: 137 TGHGNLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNN 194

Query: 267 GEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSNEVAQFLSKENQ- 325
           G+A+V+F S       L+ H+  MG+R+IEV + + + +++  G    E       E   
Sbjct: 195 GDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGNAVKEGDVLRRSEEHS 254

Query: 326 -----------------------------VIVRMRGLPFTATAEEVVAFFGQHCPITGGK 356
                                          V ++ L  +    ++  FF +   +T   
Sbjct: 255 PPRGINDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSIDERDLRNFF-RGTDLT--D 311

Query: 357 EGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRF 416
           E I F+ Y D   T  AFV+F   +    AL  HK +L  R + +   +  ++ + + R+
Sbjct: 312 EQIRFL-YKDENRTRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFIARY 370

Query: 417 SS--APLIPLPTPPIIPVLPQQFVPPTN--VRDCIRLRGLPYAATIEDILDFLGEFATDI 472
               +  +    P  +    Q++    N   + CI +R  P+  T  ++  F  +F   +
Sbjct: 371 EKKRSGSLERDRPGHV---SQKYSQEGNSGQKLCIYIRNFPFDVTKVEVQKFFADFL--L 425

Query: 473 RTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKK 511
               ++++ + +G   G+A ++ KS ++A M A++ +++
Sbjct: 426 AEDDIYLLYDDKGVGLGEALVKFKSEEQA-MKAERLNRR 463



 Score = 63.2 bits (152), Expect = 8e-10
 Identities = 57/236 (24%), Positives = 91/236 (38%), Gaps = 66/236 (27%)

Query: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
           V+R  GLP+ +   DI  FF GL I  GG  +     G   GEA + F ++E    A+ R
Sbjct: 4   VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59

Query: 286 HKHHMGTRYIEVYKATGEDFLKIA------------------------------------ 309
               +    +E++ ++  +  K                                      
Sbjct: 60  SGGFIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVDSLSNFIESVKEEASN 119

Query: 310 ---GGTSNEVAQF-----------------LSKENQVIVRMRGLPFTATAEEVVAFFGQH 349
              G + N+ A F                 L  EN  +  +RGLP+    ++V  FF   
Sbjct: 120 SGYGSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPYLF-LRGLPYLVNEDDVRVFFSGL 178

Query: 350 CPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRST 405
           C      +G++F+ + DGR  GDA V FA    A   L+ H+  +G R+IE+ + +
Sbjct: 179 C-----VDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGS 229



 Score = 53.1 bits (126), Expect = 8e-07
 Identities = 72/272 (26%), Positives = 102/272 (37%), Gaps = 69/272 (25%)

Query: 326 VIVRMRGLPFTATAEEVVAFF--------GQHCPITGGKEG---ILFVTYPDGRPT---G 371
           V++R+ GLPF A   ++  FF        G H  I GG+ G   I+F T  D R      
Sbjct: 3   VVIRLLGLPFIAGPVDIRHFFTGLTIPDGGVH--IIGGEIGEAFIIFATDEDARRAISRS 60

Query: 372 DAFV--------LFACEEYAQNALRKHKDLLGK--------------RYIELFRSTAAE- 408
             F+        L +  E  +    K  D +G+               +IE  +  A+  
Sbjct: 61  GGFIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVDSLSNFIESVKEEASNS 120

Query: 409 -----VQQVL----NRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIE 459
                + Q      N      L P  T P+    P  F           LRGLPY    +
Sbjct: 121 GYGSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPYLF-----------LRGLPYLVNED 169

Query: 460 DILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVE 519
           D+  F      D    GV  + +H GR +GDA ++  S   A     KCH+  M  R++E
Sbjct: 170 DVRVFFSGLCVD----GVIFLKHHDGRNNGDAIVKFASCVDA-SGGLKCHRSFMGSRFIE 224

Query: 520 VFQCSAEEM-----NFVLMGGTLNRNGLSPPP 546
           V Q S ++      N V  G  L R+    PP
Sbjct: 225 VMQGSEQQWIEFGGNAVKEGDVLRRSEEHSPP 256



 Score = 39.7 bits (91), Expect = 0.009
 Identities = 46/208 (22%), Positives = 80/208 (38%), Gaps = 22/208 (10%)

Query: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
           V  + L     ++D+  FF+G ++           + R    A V F + +  + AL  H
Sbjct: 286 VHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTR-YAFVMFKTLKDYNTALSLH 344

Query: 287 KHHMGTRYIEVYKATGEDFLKIA----------------GGTSNEVAQFLSKENQVIVRM 330
           K  +  R + +   + +  LK                  G  S + +Q  +   ++ + +
Sbjct: 345 KTVLQYRPVHIDPISRKQMLKFIARYEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCIYI 404

Query: 331 RGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPD-GRPTGDAFVLFACEEYAQNALRK 389
           R  PF  T  EV  FF          E  +++ Y D G   G+A V F  EE A  A R 
Sbjct: 405 RNFPFDVTKVEVQKFFADFLL----AEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERL 460

Query: 390 HKDLLGKRYIELFRSTAAEVQQVLNRFS 417
           ++       + L   + A++Q+    FS
Sbjct: 461 NRRRFLGTEVLLRLISEAQIQEFGVNFS 488



 Score = 37.4 bits (85), Expect = 0.046
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
           I++  LP+ A + +ILDF   +   I    V +  N QG P+G+A + M + + A  A +
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYR--IIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 984

Query: 507 KCHKKNMKDRYVEV 520
             + + +  R V++
Sbjct: 985 DLNDRPVGPRKVKL 998



 Score = 32.7 bits (73), Expect = 1.1
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 225 TVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVS 275
           T ++   LP++++  +I  FF G  I     ++  N QG   GEA+V  ++
Sbjct: 925 TPIKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMIN 975



 Score = 30.8 bits (68), Expect = 4.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 633 TVVRMQGLAYNTGVKEILNFFQGYQYATEDGLIHTNDQ 670
           T +++  L +   V EIL+FF GY+   +   I  N+Q
Sbjct: 925 TPIKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQ 962


>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
          Length = 960

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 18/171 (10%)

Query: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
           V+ RG P+  +++++  F   L        +  NA G + G   V F +EE    AL+ +
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLKPV--AIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353

Query: 287 KHHMGTRYIEVYKATGEDFLKIAGGTS-----------NEVAQFLSKENQVIVRMRGLPF 335
           + +MG RYIEV++       K A   +           NE  + L++  ++ V  R LP+
Sbjct: 354 REYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFV--RNLPY 411

Query: 336 TATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
           T+T E++   F ++ P++     I  +T    +P G AF+ F   E+A  A
Sbjct: 412 TSTEEDLEKLFSKYGPLSELHYPIDSLT---KKPKGFAFITFMFPEHAVKA 459



 Score = 50.4 bits (119), Expect = 5e-06
 Identities = 49/198 (24%), Positives = 80/198 (40%), Gaps = 23/198 (11%)

Query: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
           V++RG PF  T + V+ F     P+      I  V    G  TG  FV F+ EE  + AL
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLKPVA-----IRIVRNAHGNKTGYIFVDFSNEEEVKQAL 350

Query: 388 RKHKDLLGKRYIELFR-----STAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTN 442
           + +++ +G RYIE+FR     +T    +     +    L        +    + FV    
Sbjct: 351 KCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFV---- 406

Query: 443 VRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAF 502
                  R LPY +T ED+     ++      H  + + +   +P G AFI     + A 
Sbjct: 407 -------RNLPYTSTEEDLEKLFSKYGPLSELH--YPIDSLTKKPKGFAFITFMFPEHAV 457

Query: 503 MAAQKCHKKNMKDRYVEV 520
            A  +   +  + R + V
Sbjct: 458 KAYSEVDGQVFQGRMLHV 475



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 5/76 (6%)

Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
           ++LRG P+  T +++++FL      ++   + +V N  G  +G  F+   + +    A  
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAP----LKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQAL- 350

Query: 507 KCHKKNMKDRYVEVFQ 522
           KC+++ M  RY+EVF+
Sbjct: 351 KCNREYMGGRYIEVFR 366


>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
          Length = 960

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 18/171 (10%)

Query: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
           V+ RG P+  +++++  F   L        +  NA G + G   V F +EE    AL+ +
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLKPV--AIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353

Query: 287 KHHMGTRYIEVYKATGEDFLKIAGGTS-----------NEVAQFLSKENQVIVRMRGLPF 335
           + +MG RYIEV++       K A   +           NE  + L++  ++ V  R LP+
Sbjct: 354 REYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFV--RNLPY 411

Query: 336 TATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
           T+T E++   F ++ P++     I  +T    +P G AF+ F   E+A  A
Sbjct: 412 TSTEEDLEKLFSKYGPLSELHYPIDSLT---KKPKGFAFITFMFPEHAVKA 459



 Score = 50.4 bits (119), Expect = 5e-06
 Identities = 49/198 (24%), Positives = 80/198 (40%), Gaps = 23/198 (11%)

Query: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
           V++RG PF  T + V+ F     P+      I  V    G  TG  FV F+ EE  + AL
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLKPVA-----IRIVRNAHGNKTGYIFVDFSNEEEVKQAL 350

Query: 388 RKHKDLLGKRYIELFR-----STAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTN 442
           + +++ +G RYIE+FR     +T    +     +    L        +    + FV    
Sbjct: 351 KCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFV---- 406

Query: 443 VRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAF 502
                  R LPY +T ED+     ++      H  + + +   +P G AFI     + A 
Sbjct: 407 -------RNLPYTSTEEDLEKLFSKYGPLSELH--YPIDSLTKKPKGFAFITFMFPEHAV 457

Query: 503 MAAQKCHKKNMKDRYVEV 520
            A  +   +  + R + V
Sbjct: 458 KAYSEVDGQVFQGRMLHV 475



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 5/76 (6%)

Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
           ++LRG P+  T +++++FL      ++   + +V N  G  +G  F+   + +    A  
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAP----LKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQAL- 350

Query: 507 KCHKKNMKDRYVEVFQ 522
           KC+++ M  RY+EVF+
Sbjct: 351 KCNREYMGGRYIEVFR 366


>gi|226497574 RNA binding motif protein 19 [Homo sapiens]
          Length = 960

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 18/171 (10%)

Query: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
           V+ RG P+  +++++  F   L        +  NA G + G   V F +EE    AL+ +
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLKPV--AIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353

Query: 287 KHHMGTRYIEVYKATGEDFLKIAGGTS-----------NEVAQFLSKENQVIVRMRGLPF 335
           + +MG RYIEV++       K A   +           NE  + L++  ++ V  R LP+
Sbjct: 354 REYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFV--RNLPY 411

Query: 336 TATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
           T+T E++   F ++ P++     I  +T    +P G AF+ F   E+A  A
Sbjct: 412 TSTEEDLEKLFSKYGPLSELHYPIDSLT---KKPKGFAFITFMFPEHAVKA 459



 Score = 50.4 bits (119), Expect = 5e-06
 Identities = 49/198 (24%), Positives = 80/198 (40%), Gaps = 23/198 (11%)

Query: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
           V++RG PF  T + V+ F     P+      I  V    G  TG  FV F+ EE  + AL
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLKPVA-----IRIVRNAHGNKTGYIFVDFSNEEEVKQAL 350

Query: 388 RKHKDLLGKRYIELFR-----STAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTN 442
           + +++ +G RYIE+FR     +T    +     +    L        +    + FV    
Sbjct: 351 KCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFV---- 406

Query: 443 VRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAF 502
                  R LPY +T ED+     ++      H  + + +   +P G AFI     + A 
Sbjct: 407 -------RNLPYTSTEEDLEKLFSKYGPLSELH--YPIDSLTKKPKGFAFITFMFPEHAV 457

Query: 503 MAAQKCHKKNMKDRYVEV 520
            A  +   +  + R + V
Sbjct: 458 KAYSEVDGQVFQGRMLHV 475



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 5/76 (6%)

Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
           ++LRG P+  T +++++FL      ++   + +V N  G  +G  F+   + +    A  
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAP----LKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQAL- 350

Query: 507 KCHKKNMKDRYVEVFQ 522
           KC+++ M  RY+EVF+
Sbjct: 351 KCNREYMGGRYIEVFR 366


>gi|42475558 SMG-7 homolog isoform 1 [Homo sapiens]
          Length = 1137

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 30/103 (29%), Positives = 40/103 (38%), Gaps = 8/103 (7%)

Query: 537 LNRNGLSPPPCKLPCLSPPSYTFPAPAAV-----IPTEAAIYQPSVILNPRALQPSTAYY 591
           ++  G  PP    P   PP+Y  P P A          A +  P   L P A  P+    
Sbjct: 649 IHHPGAFPPLPSRPGFPPPTYVIPPPVAFSMGSGYTFPAGVSVPGTFLQPTAHSPAGNQV 708

Query: 592 PAGTQLFMNYTAYYPSPPGSPN---SLGYFPTAANLSGVPPQP 631
            AG Q  + Y+   PS PG  N        P+   L+ +P QP
Sbjct: 709 QAGKQSHIPYSQQRPSGPGPMNQGPQQSQPPSQQPLTSLPAQP 751


>gi|42476066 SMG-7 homolog isoform 4 [Homo sapiens]
          Length = 1049

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 30/103 (29%), Positives = 40/103 (38%), Gaps = 8/103 (7%)

Query: 537 LNRNGLSPPPCKLPCLSPPSYTFPAPAAV-----IPTEAAIYQPSVILNPRALQPSTAYY 591
           ++  G  PP    P   PP+Y  P P A          A +  P   L P A  P+    
Sbjct: 561 IHHPGAFPPLPSRPGFPPPTYVIPPPVAFSMGSGYTFPAGVSVPGTFLQPTAHSPAGNQV 620

Query: 592 PAGTQLFMNYTAYYPSPPGSPN---SLGYFPTAANLSGVPPQP 631
            AG Q  + Y+   PS PG  N        P+   L+ +P QP
Sbjct: 621 QAGKQSHIPYSQQRPSGPGPMNQGPQQSQPPSQQPLTSLPAQP 663


>gi|42476070 SMG-7 homolog isoform 2 [Homo sapiens]
          Length = 1091

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 30/103 (29%), Positives = 40/103 (38%), Gaps = 8/103 (7%)

Query: 537 LNRNGLSPPPCKLPCLSPPSYTFPAPAAV-----IPTEAAIYQPSVILNPRALQPSTAYY 591
           ++  G  PP    P   PP+Y  P P A          A +  P   L P A  P+    
Sbjct: 603 IHHPGAFPPLPSRPGFPPPTYVIPPPVAFSMGSGYTFPAGVSVPGTFLQPTAHSPAGNQV 662

Query: 592 PAGTQLFMNYTAYYPSPPGSPN---SLGYFPTAANLSGVPPQP 631
            AG Q  + Y+   PS PG  N        P+   L+ +P QP
Sbjct: 663 QAGKQSHIPYSQQRPSGPGPMNQGPQQSQPPSQQPLTSLPAQP 705


>gi|98986457 host cell factor 1 [Homo sapiens]
          Length = 2035

 Score = 34.7 bits (78), Expect = 0.30
 Identities = 32/103 (31%), Positives = 43/103 (41%), Gaps = 16/103 (15%)

Query: 543 SPPPCKLPCLSPPSYTFPAPAAVIPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMNYT 602
           SP P  +P +       PAPAA  P    + Q  + L P+A        P  T +     
Sbjct: 411 SPTPNPVPSVPANPPKSPAPAAAAPAVQPLTQVGITLLPQAAPAP----PTTTTI----- 461

Query: 603 AYYPSPPGSPNSLGYFPTAANLSGVPPQPGTVVRMQGLAYNTG 645
              P+ PGS  S+   PTAA   GVP     V+++ G    TG
Sbjct: 462 QVLPTVPGSSISV---PTAARTQGVP----AVLKVTGPQATTG 497



 Score = 29.6 bits (65), Expect = 9.6
 Identities = 25/94 (26%), Positives = 33/94 (35%), Gaps = 6/94 (6%)

Query: 557 YTFPAPAAVIPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMNYTAYYPSPPGSPNSLG 616
           Y  PA AA   +      PSV  NP       A  PA   L        P    +P    
Sbjct: 400 YDIPATAATATSPTPNPVPSVPANPPKSPAPAAAAPAVQPLTQVGITLLPQAAPAP---- 455

Query: 617 YFPTAANLSGVPPQPGTVVRMQGLAYNTGVKEIL 650
             PT   +  +P  PG+ + +   A   GV  +L
Sbjct: 456 --PTTTTIQVLPTVPGSSISVPTAARTQGVPAVL 487


>gi|150417989 cyclin K isoform 1 [Homo sapiens]
          Length = 580

 Score = 34.3 bits (77), Expect = 0.39
 Identities = 29/95 (30%), Positives = 35/95 (36%), Gaps = 8/95 (8%)

Query: 543 SPPPCKLPCLSPPSYTFPAPAAVIPTEA-----AIYQPSVILNPRALQPSTAYYPAGTQL 597
           +PPP  +P   PP  +FP PA   PT         Y P+    P  L P+ A  P     
Sbjct: 481 NPPPPPVP---PPPASFPPPAIPPPTPGYPPPPPTYNPNFPPPPPRLPPTHAVPPHPPPG 537

Query: 598 FMNYTAYYPSPPGSPNSLGYFPTAANLSGVPPQPG 632
                A YP P   P      P      G+PP  G
Sbjct: 538 LGLPPASYPPPAVPPGGQPPVPPPIPPPGMPPVGG 572


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,778,087
Number of Sequences: 37866
Number of extensions: 1350359
Number of successful extensions: 5640
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 94
Number of HSP's that attempted gapping in prelim test: 4970
Number of HSP's gapped (non-prelim): 468
length of query: 681
length of database: 18,247,518
effective HSP length: 109
effective length of query: 572
effective length of database: 14,120,124
effective search space: 8076710928
effective search space used: 8076710928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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