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Search of human proteins with 56790297
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|56790297 RNA binding motif protein 35A isoform 1 [Homo
sapiens]
(681 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|56790297 RNA binding motif protein 35A isoform 1 [Homo sapiens] 1383 0.0
gi|170763525 RNA binding motif protein 35A isoform 2 [Homo sapiens] 1368 0.0
gi|170763529 RNA binding motif protein 35A isoform 3 [Homo sapiens] 1316 0.0
gi|170763527 RNA binding motif protein 35A isoform 4 [Homo sapiens] 1228 0.0
gi|170763533 RNA binding motif protein 35A isoform 5 [Homo sapiens] 1212 0.0
gi|45935393 RNA binding motif protein 35B [Homo sapiens] 815 0.0
gi|149193321 G-rich RNA sequence binding factor 1 isoform 1 [Hom... 136 7e-32
gi|74099697 heterogeneous nuclear ribonucleoprotein H2 [Homo sap... 130 4e-30
gi|9624998 heterogeneous nuclear ribonucleoprotein H2 [Homo sapi... 130 4e-30
gi|5031753 heterogeneous nuclear ribonucleoprotein H1 [Homo sapi... 130 5e-30
gi|148470406 heterogeneous nuclear ribonucleoprotein F [Homo sap... 126 6e-29
gi|148470404 heterogeneous nuclear ribonucleoprotein F [Homo sap... 126 6e-29
gi|148470402 heterogeneous nuclear ribonucleoprotein F [Homo sap... 126 6e-29
gi|148470400 heterogeneous nuclear ribonucleoprotein F [Homo sap... 126 6e-29
gi|148470397 heterogeneous nuclear ribonucleoprotein F [Homo sap... 126 6e-29
gi|4826760 heterogeneous nuclear ribonucleoprotein F [Homo sapiens] 126 6e-29
gi|149193319 G-rich RNA sequence binding factor 1 isoform 2 [Hom... 116 8e-26
gi|19923345 RNA binding motif protein 12 [Homo sapiens] 102 2e-21
gi|23510462 RNA binding motif protein 12 [Homo sapiens] 102 2e-21
gi|14141157 heterogeneous nuclear ribonucleoprotein H3 isoform a... 76 9e-14
gi|14141159 heterogeneous nuclear ribonucleoprotein H3 isoform b... 76 9e-14
gi|118722349 RNA binding motif protein 12B [Homo sapiens] 68 3e-11
gi|226497734 RNA binding motif protein 19 [Homo sapiens] 59 1e-08
gi|226497654 RNA binding motif protein 19 [Homo sapiens] 59 1e-08
gi|226497574 RNA binding motif protein 19 [Homo sapiens] 59 1e-08
gi|42475558 SMG-7 homolog isoform 1 [Homo sapiens] 42 0.001
gi|42476066 SMG-7 homolog isoform 4 [Homo sapiens] 42 0.001
gi|42476070 SMG-7 homolog isoform 2 [Homo sapiens] 42 0.001
gi|98986457 host cell factor 1 [Homo sapiens] 35 0.30
gi|150417989 cyclin K isoform 1 [Homo sapiens] 34 0.39
>gi|56790297 RNA binding motif protein 35A isoform 1 [Homo sapiens]
Length = 681
Score = 1383 bits (3580), Expect = 0.0
Identities = 681/681 (100%), Positives = 681/681 (100%)
Query: 1 MTASPDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLEL 60
MTASPDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLEL
Sbjct: 1 MTASPDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLEL 60
Query: 61 TEDCKEETKIDVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHP 120
TEDCKEETKIDVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHP
Sbjct: 61 TEDCKEETKIDVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHP 120
Query: 121 EASKKNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQ 180
EASKKNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQ
Sbjct: 121 EASKKNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQ 180
Query: 181 VEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQD 240
VEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQD
Sbjct: 181 VEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQD 240
Query: 241 IARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKA 300
IARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKA
Sbjct: 241 IARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKA 300
Query: 301 TGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL 360
TGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL
Sbjct: 301 TGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL 360
Query: 361 FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAP 420
FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAP
Sbjct: 361 FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAP 420
Query: 421 LIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV 480
LIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV
Sbjct: 421 LIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV 480
Query: 481 LNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRN 540
LNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRN
Sbjct: 481 LNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRN 540
Query: 541 GLSPPPCKLPCLSPPSYTFPAPAAVIPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMN 600
GLSPPPCKLPCLSPPSYTFPAPAAVIPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMN
Sbjct: 541 GLSPPPCKLPCLSPPSYTFPAPAAVIPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMN 600
Query: 601 YTAYYPSPPGSPNSLGYFPTAANLSGVPPQPGTVVRMQGLAYNTGVKEILNFFQGYQYAT 660
YTAYYPSPPGSPNSLGYFPTAANLSGVPPQPGTVVRMQGLAYNTGVKEILNFFQGYQYAT
Sbjct: 601 YTAYYPSPPGSPNSLGYFPTAANLSGVPPQPGTVVRMQGLAYNTGVKEILNFFQGYQYAT 660
Query: 661 EDGLIHTNDQARTLPKEWVCI 681
EDGLIHTNDQARTLPKEWVCI
Sbjct: 661 EDGLIHTNDQARTLPKEWVCI 681
>gi|170763525 RNA binding motif protein 35A isoform 2 [Homo sapiens]
Length = 677
Score = 1368 bits (3540), Expect = 0.0
Identities = 677/681 (99%), Positives = 677/681 (99%), Gaps = 4/681 (0%)
Query: 1 MTASPDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLEL 60
MTASPDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLEL
Sbjct: 1 MTASPDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLEL 60
Query: 61 TEDCKEETKIDVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHP 120
TEDCKEETKIDVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHP
Sbjct: 61 TEDCKEETKIDVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHP 120
Query: 121 EASKKNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQ 180
EASKKNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQ
Sbjct: 121 EASKKNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQ 180
Query: 181 VEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQD 240
VEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQD
Sbjct: 181 VEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQD 240
Query: 241 IARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKA 300
IARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKA
Sbjct: 241 IARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKA 300
Query: 301 TGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL 360
TGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL
Sbjct: 301 TGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL 360
Query: 361 FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAP 420
FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAP
Sbjct: 361 FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAP 420
Query: 421 LIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV 480
LIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV
Sbjct: 421 LIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV 480
Query: 481 LNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRN 540
LNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRN
Sbjct: 481 LNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRN 540
Query: 541 GLSPPPCKLPCLSPPSYTFPAPAAVIPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMN 600
GLSPP PCLSPPSYTFPAPAAVIPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMN
Sbjct: 541 GLSPP----PCLSPPSYTFPAPAAVIPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMN 596
Query: 601 YTAYYPSPPGSPNSLGYFPTAANLSGVPPQPGTVVRMQGLAYNTGVKEILNFFQGYQYAT 660
YTAYYPSPPGSPNSLGYFPTAANLSGVPPQPGTVVRMQGLAYNTGVKEILNFFQGYQYAT
Sbjct: 597 YTAYYPSPPGSPNSLGYFPTAANLSGVPPQPGTVVRMQGLAYNTGVKEILNFFQGYQYAT 656
Query: 661 EDGLIHTNDQARTLPKEWVCI 681
EDGLIHTNDQARTLPKEWVCI
Sbjct: 657 EDGLIHTNDQARTLPKEWVCI 677
>gi|170763529 RNA binding motif protein 35A isoform 3 [Homo sapiens]
Length = 659
Score = 1316 bits (3406), Expect = 0.0
Identities = 653/657 (99%), Positives = 653/657 (99%), Gaps = 4/657 (0%)
Query: 1 MTASPDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLEL 60
MTASPDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLEL
Sbjct: 1 MTASPDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLEL 60
Query: 61 TEDCKEETKIDVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHP 120
TEDCKEETKIDVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHP
Sbjct: 61 TEDCKEETKIDVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHP 120
Query: 121 EASKKNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQ 180
EASKKNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQ
Sbjct: 121 EASKKNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQ 180
Query: 181 VEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQD 240
VEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQD
Sbjct: 181 VEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQD 240
Query: 241 IARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKA 300
IARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKA
Sbjct: 241 IARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKA 300
Query: 301 TGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL 360
TGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL
Sbjct: 301 TGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL 360
Query: 361 FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAP 420
FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAP
Sbjct: 361 FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAP 420
Query: 421 LIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV 480
LIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV
Sbjct: 421 LIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV 480
Query: 481 LNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRN 540
LNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRN
Sbjct: 481 LNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRN 540
Query: 541 GLSPPPCKLPCLSPPSYTFPAPAAVIPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMN 600
GLSPP PCLSPPSYTFPAPAAVIPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMN
Sbjct: 541 GLSPP----PCLSPPSYTFPAPAAVIPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMN 596
Query: 601 YTAYYPSPPGSPNSLGYFPTAANLSGVPPQPGTVVRMQGLAYNTGVKEILNFFQGYQ 657
YTAYYPSPPGSPNSLGYFPTAANLSGVPPQPGTVVRMQGLAYNTGVKEILNFFQGYQ
Sbjct: 597 YTAYYPSPPGSPNSLGYFPTAANLSGVPPQPGTVVRMQGLAYNTGVKEILNFFQGYQ 653
>gi|170763527 RNA binding motif protein 35A isoform 4 [Homo sapiens]
Length = 608
Score = 1228 bits (3177), Expect = 0.0
Identities = 607/607 (100%), Positives = 607/607 (100%)
Query: 1 MTASPDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLEL 60
MTASPDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLEL
Sbjct: 1 MTASPDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLEL 60
Query: 61 TEDCKEETKIDVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHP 120
TEDCKEETKIDVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHP
Sbjct: 61 TEDCKEETKIDVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHP 120
Query: 121 EASKKNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQ 180
EASKKNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQ
Sbjct: 121 EASKKNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQ 180
Query: 181 VEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQD 240
VEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQD
Sbjct: 181 VEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQD 240
Query: 241 IARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKA 300
IARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKA
Sbjct: 241 IARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKA 300
Query: 301 TGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL 360
TGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL
Sbjct: 301 TGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL 360
Query: 361 FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAP 420
FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAP
Sbjct: 361 FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAP 420
Query: 421 LIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV 480
LIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV
Sbjct: 421 LIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV 480
Query: 481 LNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRN 540
LNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRN
Sbjct: 481 LNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRN 540
Query: 541 GLSPPPCKLPCLSPPSYTFPAPAAVIPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMN 600
GLSPPPCKLPCLSPPSYTFPAPAAVIPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMN
Sbjct: 541 GLSPPPCKLPCLSPPSYTFPAPAAVIPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMN 600
Query: 601 YTAYYPS 607
YTAYYPS
Sbjct: 601 YTAYYPS 607
>gi|170763533 RNA binding motif protein 35A isoform 5 [Homo sapiens]
Length = 604
Score = 1212 bits (3137), Expect = 0.0
Identities = 603/607 (99%), Positives = 603/607 (99%), Gaps = 4/607 (0%)
Query: 1 MTASPDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLEL 60
MTASPDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLEL
Sbjct: 1 MTASPDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLEL 60
Query: 61 TEDCKEETKIDVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHP 120
TEDCKEETKIDVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHP
Sbjct: 61 TEDCKEETKIDVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHP 120
Query: 121 EASKKNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQ 180
EASKKNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQ
Sbjct: 121 EASKKNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQ 180
Query: 181 VEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQD 240
VEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQD
Sbjct: 181 VEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQD 240
Query: 241 IARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKA 300
IARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKA
Sbjct: 241 IARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKA 300
Query: 301 TGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL 360
TGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL
Sbjct: 301 TGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGIL 360
Query: 361 FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAP 420
FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAP
Sbjct: 361 FVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAP 420
Query: 421 LIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV 480
LIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV
Sbjct: 421 LIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV 480
Query: 481 LNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRN 540
LNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRN
Sbjct: 481 LNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRN 540
Query: 541 GLSPPPCKLPCLSPPSYTFPAPAAVIPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMN 600
GLSPP PCLSPPSYTFPAPAAVIPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMN
Sbjct: 541 GLSPP----PCLSPPSYTFPAPAAVIPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMN 596
Query: 601 YTAYYPS 607
YTAYYPS
Sbjct: 597 YTAYYPS 603
>gi|45935393 RNA binding motif protein 35B [Homo sapiens]
Length = 717
Score = 815 bits (2106), Expect = 0.0
Identities = 418/693 (60%), Positives = 515/693 (74%), Gaps = 18/693 (2%)
Query: 5 PDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLELTEDC 64
P LVVLFG TAGA G LGSDE +LILL W+VV+ +++VG LH+ LVR + L+ C
Sbjct: 27 PGSLVVLFGATAGALGRDLGSDETDLILLVWQVVEPRSRQVGTLHKSLVRAEAAALSTQC 86
Query: 65 KEETKIDVESLSSASQLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHPEASK 124
+E + + +SL+ A LD+ L+QF+Q V+ ++ + G + LCTDGQ +RQ+LHPEAS+
Sbjct: 87 REASGLSADSLARAEPLDKVLQQFSQLVNGDVALLGGGPYMLCTDGQQLLRQVLHPEASR 146
Query: 125 KNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLNFEKSSSVSRYGASQVEDM 184
KN++LP+ F+SF+DLR+EF P + L VATM + L E ++ +G +V+ M
Sbjct: 147 KNLVLPDMFFSFYDLRREFHMQHPSTCPARDLTVATMAQGLGLETDATEDDFGVWEVKTM 206
Query: 185 GNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQDIARF 244
+IL ++ EP + FS PE + K+E+G CSK +++D TVVRARGLPWQSSDQD+ARF
Sbjct: 207 VAVILHLLKEPSSQLFSKPEVIKQKYETGPCSKADVVDSETVVRARGLPWQSSDQDVARF 266
Query: 245 FKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGED 304
FKGLN+A+GG ALCLNAQGRRNGEAL+RFV E RDLALQRHKHHMG RYIEVYKATGE+
Sbjct: 267 FKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEE 326
Query: 305 FLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY 364
F+KIAGGTS EVA+FLS+E+QVI+R+RGLPF+A +V+ F G CP+TGG EG+LFV +
Sbjct: 327 FVKIAGGTSLEVARFLSREDQVILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRH 386
Query: 365 PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPL 424
PDGRPTGDAF LFACEE AQ ALR+HK +LGKRYIELFRSTAAEVQQVLNR++S PL+P
Sbjct: 387 PDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPT 446
Query: 425 PTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ 484
T P++P+ P P T RDC+RLRGLPY ATIEDIL FLGE A DIR HGVHMVLN Q
Sbjct: 447 LTAPLLPI-PFPLAPGTG-RDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQ 504
Query: 485 GRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSP 544
GRPSGDAFIQM SA+RA AAQ+CHKK MK+RYVEV CS EEM+ VLMGGTL R+G+SP
Sbjct: 505 GRPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMSP 564
Query: 545 PPCKLPCLSPPSY-TFPAPAAVIPTEAAIYQPSVILNPRALQPS----TAYYPA-GTQLF 598
PPCKLPCLSPP+Y TF A +IPTE A PS L P A P+ AYYP TQL+
Sbjct: 565 PPCKLPCLSPPTYTTFQATPTLIPTETAALYPSSALLPAARVPAAPTPVAYYPGPATQLY 624
Query: 599 MNYTAYYPSPPGSPNSLGYF--PTAANLS---GVPPQPGTVVRMQGLAYNTGVKEILNFF 653
+NYTAYYPSPP SP ++GY PTAA S V Q G +VRMQG+ Y G+K++L+ F
Sbjct: 625 LNYTAYYPSPPVSPTTVGYLTTPTAALASAPTSVLSQSGALVRMQGVPYTAGMKDLLSVF 684
Query: 654 QGYQYATED--GLIHTNDQARTL---PKEWVCI 681
Q YQ +D L+ D RT+ PKEWVC+
Sbjct: 685 QAYQLPADDYTSLMPVGDPPRTVLQAPKEWVCL 717
>gi|149193321 G-rich RNA sequence binding factor 1 isoform 1 [Homo
sapiens]
Length = 480
Score = 136 bits (342), Expect = 7e-32
Identities = 102/356 (28%), Positives = 167/356 (46%), Gaps = 60/356 (16%)
Query: 209 KFESGTCSKMELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKG--GAALCLNAQGRRN 266
++E E +DD ++RA+GLPW + +D+ FF I G G LN G+R
Sbjct: 134 EYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRR 193
Query: 267 GEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGED---FLKIAGGTSNEVAQFLSKE 323
G+AL+ SE+ AL++H+ +MG RY+EVY+ ED +K S+ V
Sbjct: 194 GDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVV------ 247
Query: 324 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFV-TYPDGRPTGDAFVLFACEEY 382
N +VR+RGLP++ +++V FF + I FV Y R TG+A+V F E
Sbjct: 248 NDGVVRLRGLPYSCNEKDIVDFFAGLNIV-----DITFVMDYRGRRKTGEAYVQFEEPEM 302
Query: 383 AQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIP----------- 431
A AL KH++ +G RYIE+F S EV+ + + + PT I
Sbjct: 303 ANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEV 362
Query: 432 ----------------VLPQQFVP----------PTNVRDCIRLRGLPYAATIEDILDFL 465
LP++ VP T+ + +RGLP+ A +DI++F
Sbjct: 363 NEDIQPMTAFESEKEIELPKE-VPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFF 421
Query: 466 GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVF 521
++ + M + G+ +G+A + ++ + A +AA + ++ RY+E+F
Sbjct: 422 ----APLKPVRITMEYSSSGKATGEADVHFETHEDA-VAAMLKDRSHVHHRYIELF 472
Score = 97.1 bits (240), Expect = 5e-20
Identities = 58/203 (28%), Positives = 107/203 (52%), Gaps = 25/203 (12%)
Query: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
++R +GLP++ T E+V+ FF C I G+ GI F+ DG+ GDA + E+ Q A
Sbjct: 151 LIRAQGLPWSCTMEDVLNFFSD-CRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA 209
Query: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
L KH+ +G+RY+E++ +V ++ + + + P++
Sbjct: 210 LEKHRMYMGQRYVEVYEINNEDVDALMKS------LQVKSSPVVN------------DGV 251
Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGR-PSGDAFIQMKSADRAFMAA 505
+RLRGLPY+ +DI+DF + + V++++GR +G+A++Q + + A A
Sbjct: 252 VRLRGLPYSCNEKDIVDFFA----GLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQAL 307
Query: 506 QKCHKKNMKDRYVEVFQCSAEEM 528
K H++ + +RY+E+F E+
Sbjct: 308 LK-HREEIGNRYIEIFPSRRNEV 329
Score = 69.7 bits (169), Expect = 8e-12
Identities = 36/109 (33%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Query: 424 LPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNH 483
LP PP + P + + IR +GLP++ T+ED+L+F + +G+H +LN
Sbjct: 129 LPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNR 188
Query: 484 QGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVL 532
G+ GDA I+M+S A +K H+ M RYVEV++ + E+++ ++
Sbjct: 189 DGKRRGDALIEMESEQDVQKALEK-HRMYMGQRYVEVYEINNEDVDALM 236
>gi|74099697 heterogeneous nuclear ribonucleoprotein H2 [Homo
sapiens]
Length = 449
Score = 130 bits (327), Expect = 4e-30
Identities = 80/193 (41%), Positives = 108/193 (55%), Gaps = 20/193 (10%)
Query: 226 VVRARGLPWQSSDQDIARFFKGLNIAKG--GAALCLNAQGRRNGEALVRFVSEEHRDLAL 283
VV+ RGLPW S ++ RFF I G G +GR +GEA V SEE LAL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340
++ + MG RY+EV+K+ + LK G S + A N VR+RGLPF + E
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTA------NDGFVRLRGLPFGCSKE 125
Query: 341 EVVAFFGQHCPITGGKEGILFVTYP---DGRPTGDAFVLFACEEYAQNALRKHKDLLGKR 397
E+V FF + G +T P GR TG+AFV FA +E A+ AL+KHK+ +G R
Sbjct: 126 EIVQFFSGLEIVPNG------MTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHR 179
Query: 398 YIELFRSTAAEVQ 410
YIE+F+S+ AEV+
Sbjct: 180 YIEIFKSSRAEVR 192
Score = 117 bits (294), Expect = 3e-26
Identities = 71/202 (35%), Positives = 115/202 (56%), Gaps = 22/202 (10%)
Query: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
+V++RGLP++ +A+EV+ FF C I G GI F+ +GRP+G+AFV EE + A
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSD-CKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLA 70
Query: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
L+K ++ +G RY+E+F+S + E+ VL T P P T
Sbjct: 71 LKKDRETMGHRYVEVFKSNSVEMDWVLKH----------TGP--------NSPDTANDGF 112
Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
+RLRGLP+ + E+I+ F +I +G+ + ++ QGR +G+AF+Q S + A A +
Sbjct: 113 VRLRGLPFGCSKEEIVQFFS--GLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALK 170
Query: 507 KCHKKNMKDRYVEVFQCSAEEM 528
K HK+ + RY+E+F+ S E+
Sbjct: 171 K-HKERIGHRYIEIFKSSRAEV 191
Score = 65.5 bits (158), Expect = 2e-10
Identities = 28/86 (32%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
+++RGLP++ + ++++ F + T G+ + +GRPSG+AF++++S + +A +
Sbjct: 13 VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALK 72
Query: 507 KCHKKNMKDRYVEVFQCSAEEMNFVL 532
K ++ M RYVEVF+ ++ EM++VL
Sbjct: 73 K-DRETMGHRYVEVFKSNSVEMDWVL 97
Score = 52.0 bits (123), Expect = 2e-06
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
V MRGLP+ AT ++ FF P+ + PDGR TG+A V FA E A A+
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPMR-----VHIEIGPDGRVTGEADVEFATHEDAVAAM 345
Query: 388 RKHKDLLGKRYIELFRSTAA 407
K K + RY+ELF ++ A
Sbjct: 346 AKDKANMQHRYVELFLNSTA 365
Score = 50.1 bits (118), Expect = 7e-06
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 446 CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 505
C+ +RGLPY AT DI +F + + VH+ + GR +G+A ++ + + A +AA
Sbjct: 290 CVHMRGLPYRATENDIYNFF----SPLNPMRVHIEIGPDGRVTGEADVEFATHEDA-VAA 344
Query: 506 QKCHKKNMKDRYVEVF 521
K NM+ RYVE+F
Sbjct: 345 MAKDKANMQHRYVELF 360
Score = 46.2 bits (108), Expect = 1e-04
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
V RGLP+++++ DI FF LN + + + GR GEA V F + E A+ +
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPMR--VHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 287 KHHMGTRYIEVYKATGEDFLKIAGGTS 313
K +M RY+E+ FL GTS
Sbjct: 349 KANMQHRYVEL-------FLNSTAGTS 368
>gi|9624998 heterogeneous nuclear ribonucleoprotein H2 [Homo
sapiens]
Length = 449
Score = 130 bits (327), Expect = 4e-30
Identities = 80/193 (41%), Positives = 108/193 (55%), Gaps = 20/193 (10%)
Query: 226 VVRARGLPWQSSDQDIARFFKGLNIAKG--GAALCLNAQGRRNGEALVRFVSEEHRDLAL 283
VV+ RGLPW S ++ RFF I G G +GR +GEA V SEE LAL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340
++ + MG RY+EV+K+ + LK G S + A N VR+RGLPF + E
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTA------NDGFVRLRGLPFGCSKE 125
Query: 341 EVVAFFGQHCPITGGKEGILFVTYP---DGRPTGDAFVLFACEEYAQNALRKHKDLLGKR 397
E+V FF + G +T P GR TG+AFV FA +E A+ AL+KHK+ +G R
Sbjct: 126 EIVQFFSGLEIVPNG------MTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHR 179
Query: 398 YIELFRSTAAEVQ 410
YIE+F+S+ AEV+
Sbjct: 180 YIEIFKSSRAEVR 192
Score = 117 bits (294), Expect = 3e-26
Identities = 71/202 (35%), Positives = 115/202 (56%), Gaps = 22/202 (10%)
Query: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
+V++RGLP++ +A+EV+ FF C I G GI F+ +GRP+G+AFV EE + A
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSD-CKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLA 70
Query: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
L+K ++ +G RY+E+F+S + E+ VL T P P T
Sbjct: 71 LKKDRETMGHRYVEVFKSNSVEMDWVLKH----------TGP--------NSPDTANDGF 112
Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
+RLRGLP+ + E+I+ F +I +G+ + ++ QGR +G+AF+Q S + A A +
Sbjct: 113 VRLRGLPFGCSKEEIVQFFS--GLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALK 170
Query: 507 KCHKKNMKDRYVEVFQCSAEEM 528
K HK+ + RY+E+F+ S E+
Sbjct: 171 K-HKERIGHRYIEIFKSSRAEV 191
Score = 65.5 bits (158), Expect = 2e-10
Identities = 28/86 (32%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
+++RGLP++ + ++++ F + T G+ + +GRPSG+AF++++S + +A +
Sbjct: 13 VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALK 72
Query: 507 KCHKKNMKDRYVEVFQCSAEEMNFVL 532
K ++ M RYVEVF+ ++ EM++VL
Sbjct: 73 K-DRETMGHRYVEVFKSNSVEMDWVL 97
Score = 52.0 bits (123), Expect = 2e-06
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
V MRGLP+ AT ++ FF P+ + PDGR TG+A V FA E A A+
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPMR-----VHIEIGPDGRVTGEADVEFATHEDAVAAM 345
Query: 388 RKHKDLLGKRYIELFRSTAA 407
K K + RY+ELF ++ A
Sbjct: 346 AKDKANMQHRYVELFLNSTA 365
Score = 50.1 bits (118), Expect = 7e-06
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 446 CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 505
C+ +RGLPY AT DI +F + + VH+ + GR +G+A ++ + + A +AA
Sbjct: 290 CVHMRGLPYRATENDIYNFF----SPLNPMRVHIEIGPDGRVTGEADVEFATHEDA-VAA 344
Query: 506 QKCHKKNMKDRYVEVF 521
K NM+ RYVE+F
Sbjct: 345 MAKDKANMQHRYVELF 360
Score = 46.2 bits (108), Expect = 1e-04
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
V RGLP+++++ DI FF LN + + + GR GEA V F + E A+ +
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPMR--VHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 287 KHHMGTRYIEVYKATGEDFLKIAGGTS 313
K +M RY+E+ FL GTS
Sbjct: 349 KANMQHRYVEL-------FLNSTAGTS 368
>gi|5031753 heterogeneous nuclear ribonucleoprotein H1 [Homo
sapiens]
Length = 449
Score = 130 bits (326), Expect = 5e-30
Identities = 79/193 (40%), Positives = 108/193 (55%), Gaps = 20/193 (10%)
Query: 226 VVRARGLPWQSSDQDIARFFKGLNIAKG--GAALCLNAQGRRNGEALVRFVSEEHRDLAL 283
VV+ RGLPW S ++ RFF I G G +GR +GEA V SE+ LAL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340
++ + MG RY+EV+K+ + LK G S + A N VR+RGLPF + E
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTA------NDGFVRLRGLPFGCSKE 125
Query: 341 EVVAFFGQHCPITGGKEGILFVTYP---DGRPTGDAFVLFACEEYAQNALRKHKDLLGKR 397
E+V FF + G +T P GR TG+AFV FA +E A+ AL+KHK+ +G R
Sbjct: 126 EIVQFFSGLEIVPNG------ITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHR 179
Query: 398 YIELFRSTAAEVQ 410
YIE+F+S+ AEV+
Sbjct: 180 YIEIFKSSRAEVR 192
Score = 115 bits (289), Expect = 1e-25
Identities = 70/202 (34%), Positives = 114/202 (56%), Gaps = 22/202 (10%)
Query: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
+V++RGLP++ +A+EV FF C I G +GI F+ +GRP+G+AFV E+ + A
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSD-CKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 70
Query: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
L+K ++ +G RY+E+F+S E+ VL T P P T
Sbjct: 71 LKKDRETMGHRYVEVFKSNNVEMDWVLKH----------TGP--------NSPDTANDGF 112
Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
+RLRGLP+ + E+I+ F +I +G+ + ++ QGR +G+AF+Q S + A A +
Sbjct: 113 VRLRGLPFGCSKEEIVQFFS--GLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALK 170
Query: 507 KCHKKNMKDRYVEVFQCSAEEM 528
K HK+ + RY+E+F+ S E+
Sbjct: 171 K-HKERIGHRYIEIFKSSRAEV 191
Score = 62.8 bits (151), Expect = 1e-09
Identities = 28/86 (32%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
+++RGLP++ + +++ F + G+ + +GRPSG+AF++++S D +A +
Sbjct: 13 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 72
Query: 507 KCHKKNMKDRYVEVFQCSAEEMNFVL 532
K ++ M RYVEVF+ + EM++VL
Sbjct: 73 K-DRETMGHRYVEVFKSNNVEMDWVL 97
Score = 52.8 bits (125), Expect = 1e-06
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
V MRGLP+ AT ++ FF P+ + PDGR TG+A V FA E A A+
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEDAVAAM 345
Query: 388 RKHKDLLGKRYIELFRSTAA 407
K K + RY+ELF ++ A
Sbjct: 346 SKDKANMQHRYVELFLNSTA 365
Score = 50.1 bits (118), Expect = 7e-06
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 446 CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 505
C+ +RGLPY AT DI +F + + VH+ + GR +G+A ++ + + A +AA
Sbjct: 290 CVHMRGLPYRATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEFATHEDA-VAA 344
Query: 506 QKCHKKNMKDRYVEVF 521
K NM+ RYVE+F
Sbjct: 345 MSKDKANMQHRYVELF 360
Score = 46.2 bits (108), Expect = 1e-04
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
V RGLP+++++ DI FF LN + + + GR GEA V F + E A+ +
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 348
Query: 287 KHHMGTRYIEVY 298
K +M RY+E++
Sbjct: 349 KANMQHRYVELF 360
>gi|148470406 heterogeneous nuclear ribonucleoprotein F [Homo
sapiens]
Length = 415
Score = 126 bits (317), Expect = 6e-29
Identities = 80/201 (39%), Positives = 112/201 (55%), Gaps = 18/201 (8%)
Query: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAAL--CLNAQGRRNGEALVRFVSEEHRDLAL 283
VV+ RGLPW S +D+ F I G A + +GR++GEA V SE+ +AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340
++ + MG RYIEV+K+ + LK +G S + A N VR+RGLPF T E
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSA------NDGFVRLRGLPFGCTKE 125
Query: 341 EVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 400
E+V FF + GI P+G+ TG+AFV FA +E A+ AL KHK+ +G RYIE
Sbjct: 126 EIVQFFSG---LEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIE 182
Query: 401 LFRSTAAEVQQVLNRFSSAPL 421
+F+S+ EV+ +S PL
Sbjct: 183 VFKSSQEEVRS----YSDPPL 199
Score = 104 bits (260), Expect = 2e-22
Identities = 98/340 (28%), Positives = 149/340 (43%), Gaps = 55/340 (16%)
Query: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
+V++RGLP++ + E+V F C I G G+ F+ +GR +G+AFV E+ + A
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70
Query: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
L+K ++ +G RYIE+F+S E+ VL P FV
Sbjct: 71 LKKDRESMGHRYIEVFKSHRTEMDWVLKHSG---------PNSADSANDGFV-------- 113
Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
RLRGLP+ T E+I+ F +I +G+ + ++ +G+ +G+AF+Q S + A A
Sbjct: 114 -RLRGLPFGCTKEEIVQFFS--GLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 170
Query: 507 KCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSPPPCKLPCLSPPS-YTFPAPAAV 565
K HK+ + RY+EVF+ S EE+ S PP K + P Y P A
Sbjct: 171 K-HKERIGHRYIEVFKSSQEEV-----------RSYSDPPLKFMSVQRPGPYDRPGTAR- 217
Query: 566 IPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMNYTAYYPSPPGSPNSLGYFPTAANLS 625
I + + + R ST Y G + + + Y G L + LS
Sbjct: 218 --RYIGIVKQAGLERMRPGAYSTGY--GGYEEYSGLSDGY----GFTTDLFGRDLSYCLS 269
Query: 626 G------------VPPQPGTVVRMQGLAYNTGVKEILNFF 653
G V G V M+GL Y +I NFF
Sbjct: 270 GMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFF 309
Score = 54.7 bits (130), Expect = 3e-07
Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 21/156 (13%)
Query: 159 ATMTEYLNFEKSSSVSRYGASQVEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKM 218
A T Y +E+ S +S + G + +S Y+HR+ D E + +G C
Sbjct: 235 AYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSE-FTVQSTTGHC--- 290
Query: 219 ELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEH 278
V RGLP+++++ DI FF LN + + + GR GEA V F + E
Sbjct: 291 --------VHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEE 340
Query: 279 RDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSN 314
A+ + + +M RYIE+ FL G SN
Sbjct: 341 AVAAMSKDRANMQHRYIEL-------FLNSTTGASN 369
Score = 50.8 bits (120), Expect = 4e-06
Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
V MRGLP+ AT ++ FF P+ + PDGR TG+A V FA E A A+
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEEAVAAM 345
Query: 388 RKHKDLLGKRYIELF 402
K + + RYIELF
Sbjct: 346 SKDRANMQHRYIELF 360
Score = 50.4 bits (119), Expect = 5e-06
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 436 QFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
+F + C+ +RGLPY AT DI +F + + VH+ + GR +G+A ++
Sbjct: 280 EFTVQSTTGHCVHMRGLPYKATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEF 335
Query: 496 KSADRAFMAAQKCHKKNMKDRYVEVF 521
+ + A +AA + NM+ RY+E+F
Sbjct: 336 ATHEEA-VAAMSKDRANMQHRYIELF 360
>gi|148470404 heterogeneous nuclear ribonucleoprotein F [Homo
sapiens]
Length = 415
Score = 126 bits (317), Expect = 6e-29
Identities = 80/201 (39%), Positives = 112/201 (55%), Gaps = 18/201 (8%)
Query: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAAL--CLNAQGRRNGEALVRFVSEEHRDLAL 283
VV+ RGLPW S +D+ F I G A + +GR++GEA V SE+ +AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340
++ + MG RYIEV+K+ + LK +G S + A N VR+RGLPF T E
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSA------NDGFVRLRGLPFGCTKE 125
Query: 341 EVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 400
E+V FF + GI P+G+ TG+AFV FA +E A+ AL KHK+ +G RYIE
Sbjct: 126 EIVQFFSG---LEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIE 182
Query: 401 LFRSTAAEVQQVLNRFSSAPL 421
+F+S+ EV+ +S PL
Sbjct: 183 VFKSSQEEVRS----YSDPPL 199
Score = 104 bits (260), Expect = 2e-22
Identities = 98/340 (28%), Positives = 149/340 (43%), Gaps = 55/340 (16%)
Query: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
+V++RGLP++ + E+V F C I G G+ F+ +GR +G+AFV E+ + A
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70
Query: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
L+K ++ +G RYIE+F+S E+ VL P FV
Sbjct: 71 LKKDRESMGHRYIEVFKSHRTEMDWVLKHSG---------PNSADSANDGFV-------- 113
Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
RLRGLP+ T E+I+ F +I +G+ + ++ +G+ +G+AF+Q S + A A
Sbjct: 114 -RLRGLPFGCTKEEIVQFFS--GLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 170
Query: 507 KCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSPPPCKLPCLSPPS-YTFPAPAAV 565
K HK+ + RY+EVF+ S EE+ S PP K + P Y P A
Sbjct: 171 K-HKERIGHRYIEVFKSSQEEV-----------RSYSDPPLKFMSVQRPGPYDRPGTAR- 217
Query: 566 IPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMNYTAYYPSPPGSPNSLGYFPTAANLS 625
I + + + R ST Y G + + + Y G L + LS
Sbjct: 218 --RYIGIVKQAGLERMRPGAYSTGY--GGYEEYSGLSDGY----GFTTDLFGRDLSYCLS 269
Query: 626 G------------VPPQPGTVVRMQGLAYNTGVKEILNFF 653
G V G V M+GL Y +I NFF
Sbjct: 270 GMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFF 309
Score = 54.7 bits (130), Expect = 3e-07
Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 21/156 (13%)
Query: 159 ATMTEYLNFEKSSSVSRYGASQVEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKM 218
A T Y +E+ S +S + G + +S Y+HR+ D E + +G C
Sbjct: 235 AYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSE-FTVQSTTGHC--- 290
Query: 219 ELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEH 278
V RGLP+++++ DI FF LN + + + GR GEA V F + E
Sbjct: 291 --------VHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEE 340
Query: 279 RDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSN 314
A+ + + +M RYIE+ FL G SN
Sbjct: 341 AVAAMSKDRANMQHRYIEL-------FLNSTTGASN 369
Score = 50.8 bits (120), Expect = 4e-06
Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
V MRGLP+ AT ++ FF P+ + PDGR TG+A V FA E A A+
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEEAVAAM 345
Query: 388 RKHKDLLGKRYIELF 402
K + + RYIELF
Sbjct: 346 SKDRANMQHRYIELF 360
Score = 50.4 bits (119), Expect = 5e-06
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 436 QFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
+F + C+ +RGLPY AT DI +F + + VH+ + GR +G+A ++
Sbjct: 280 EFTVQSTTGHCVHMRGLPYKATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEF 335
Query: 496 KSADRAFMAAQKCHKKNMKDRYVEVF 521
+ + A +AA + NM+ RY+E+F
Sbjct: 336 ATHEEA-VAAMSKDRANMQHRYIELF 360
>gi|148470402 heterogeneous nuclear ribonucleoprotein F [Homo
sapiens]
Length = 415
Score = 126 bits (317), Expect = 6e-29
Identities = 80/201 (39%), Positives = 112/201 (55%), Gaps = 18/201 (8%)
Query: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAAL--CLNAQGRRNGEALVRFVSEEHRDLAL 283
VV+ RGLPW S +D+ F I G A + +GR++GEA V SE+ +AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340
++ + MG RYIEV+K+ + LK +G S + A N VR+RGLPF T E
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSA------NDGFVRLRGLPFGCTKE 125
Query: 341 EVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 400
E+V FF + GI P+G+ TG+AFV FA +E A+ AL KHK+ +G RYIE
Sbjct: 126 EIVQFFSG---LEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIE 182
Query: 401 LFRSTAAEVQQVLNRFSSAPL 421
+F+S+ EV+ +S PL
Sbjct: 183 VFKSSQEEVRS----YSDPPL 199
Score = 104 bits (260), Expect = 2e-22
Identities = 98/340 (28%), Positives = 149/340 (43%), Gaps = 55/340 (16%)
Query: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
+V++RGLP++ + E+V F C I G G+ F+ +GR +G+AFV E+ + A
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70
Query: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
L+K ++ +G RYIE+F+S E+ VL P FV
Sbjct: 71 LKKDRESMGHRYIEVFKSHRTEMDWVLKHSG---------PNSADSANDGFV-------- 113
Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
RLRGLP+ T E+I+ F +I +G+ + ++ +G+ +G+AF+Q S + A A
Sbjct: 114 -RLRGLPFGCTKEEIVQFFS--GLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 170
Query: 507 KCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSPPPCKLPCLSPPS-YTFPAPAAV 565
K HK+ + RY+EVF+ S EE+ S PP K + P Y P A
Sbjct: 171 K-HKERIGHRYIEVFKSSQEEV-----------RSYSDPPLKFMSVQRPGPYDRPGTAR- 217
Query: 566 IPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMNYTAYYPSPPGSPNSLGYFPTAANLS 625
I + + + R ST Y G + + + Y G L + LS
Sbjct: 218 --RYIGIVKQAGLERMRPGAYSTGY--GGYEEYSGLSDGY----GFTTDLFGRDLSYCLS 269
Query: 626 G------------VPPQPGTVVRMQGLAYNTGVKEILNFF 653
G V G V M+GL Y +I NFF
Sbjct: 270 GMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFF 309
Score = 54.7 bits (130), Expect = 3e-07
Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 21/156 (13%)
Query: 159 ATMTEYLNFEKSSSVSRYGASQVEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKM 218
A T Y +E+ S +S + G + +S Y+HR+ D E + +G C
Sbjct: 235 AYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSE-FTVQSTTGHC--- 290
Query: 219 ELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEH 278
V RGLP+++++ DI FF LN + + + GR GEA V F + E
Sbjct: 291 --------VHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEE 340
Query: 279 RDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSN 314
A+ + + +M RYIE+ FL G SN
Sbjct: 341 AVAAMSKDRANMQHRYIEL-------FLNSTTGASN 369
Score = 50.8 bits (120), Expect = 4e-06
Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
V MRGLP+ AT ++ FF P+ + PDGR TG+A V FA E A A+
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEEAVAAM 345
Query: 388 RKHKDLLGKRYIELF 402
K + + RYIELF
Sbjct: 346 SKDRANMQHRYIELF 360
Score = 50.4 bits (119), Expect = 5e-06
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 436 QFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
+F + C+ +RGLPY AT DI +F + + VH+ + GR +G+A ++
Sbjct: 280 EFTVQSTTGHCVHMRGLPYKATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEF 335
Query: 496 KSADRAFMAAQKCHKKNMKDRYVEVF 521
+ + A +AA + NM+ RY+E+F
Sbjct: 336 ATHEEA-VAAMSKDRANMQHRYIELF 360
>gi|148470400 heterogeneous nuclear ribonucleoprotein F [Homo
sapiens]
Length = 415
Score = 126 bits (317), Expect = 6e-29
Identities = 80/201 (39%), Positives = 112/201 (55%), Gaps = 18/201 (8%)
Query: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAAL--CLNAQGRRNGEALVRFVSEEHRDLAL 283
VV+ RGLPW S +D+ F I G A + +GR++GEA V SE+ +AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340
++ + MG RYIEV+K+ + LK +G S + A N VR+RGLPF T E
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSA------NDGFVRLRGLPFGCTKE 125
Query: 341 EVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 400
E+V FF + GI P+G+ TG+AFV FA +E A+ AL KHK+ +G RYIE
Sbjct: 126 EIVQFFSG---LEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIE 182
Query: 401 LFRSTAAEVQQVLNRFSSAPL 421
+F+S+ EV+ +S PL
Sbjct: 183 VFKSSQEEVRS----YSDPPL 199
Score = 104 bits (260), Expect = 2e-22
Identities = 98/340 (28%), Positives = 149/340 (43%), Gaps = 55/340 (16%)
Query: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
+V++RGLP++ + E+V F C I G G+ F+ +GR +G+AFV E+ + A
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70
Query: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
L+K ++ +G RYIE+F+S E+ VL P FV
Sbjct: 71 LKKDRESMGHRYIEVFKSHRTEMDWVLKHSG---------PNSADSANDGFV-------- 113
Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
RLRGLP+ T E+I+ F +I +G+ + ++ +G+ +G+AF+Q S + A A
Sbjct: 114 -RLRGLPFGCTKEEIVQFFS--GLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 170
Query: 507 KCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSPPPCKLPCLSPPS-YTFPAPAAV 565
K HK+ + RY+EVF+ S EE+ S PP K + P Y P A
Sbjct: 171 K-HKERIGHRYIEVFKSSQEEV-----------RSYSDPPLKFMSVQRPGPYDRPGTAR- 217
Query: 566 IPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMNYTAYYPSPPGSPNSLGYFPTAANLS 625
I + + + R ST Y G + + + Y G L + LS
Sbjct: 218 --RYIGIVKQAGLERMRPGAYSTGY--GGYEEYSGLSDGY----GFTTDLFGRDLSYCLS 269
Query: 626 G------------VPPQPGTVVRMQGLAYNTGVKEILNFF 653
G V G V M+GL Y +I NFF
Sbjct: 270 GMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFF 309
Score = 54.7 bits (130), Expect = 3e-07
Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 21/156 (13%)
Query: 159 ATMTEYLNFEKSSSVSRYGASQVEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKM 218
A T Y +E+ S +S + G + +S Y+HR+ D E + +G C
Sbjct: 235 AYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSE-FTVQSTTGHC--- 290
Query: 219 ELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEH 278
V RGLP+++++ DI FF LN + + + GR GEA V F + E
Sbjct: 291 --------VHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEE 340
Query: 279 RDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSN 314
A+ + + +M RYIE+ FL G SN
Sbjct: 341 AVAAMSKDRANMQHRYIEL-------FLNSTTGASN 369
Score = 50.8 bits (120), Expect = 4e-06
Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
V MRGLP+ AT ++ FF P+ + PDGR TG+A V FA E A A+
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEEAVAAM 345
Query: 388 RKHKDLLGKRYIELF 402
K + + RYIELF
Sbjct: 346 SKDRANMQHRYIELF 360
Score = 50.4 bits (119), Expect = 5e-06
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 436 QFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
+F + C+ +RGLPY AT DI +F + + VH+ + GR +G+A ++
Sbjct: 280 EFTVQSTTGHCVHMRGLPYKATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEF 335
Query: 496 KSADRAFMAAQKCHKKNMKDRYVEVF 521
+ + A +AA + NM+ RY+E+F
Sbjct: 336 ATHEEA-VAAMSKDRANMQHRYIELF 360
>gi|148470397 heterogeneous nuclear ribonucleoprotein F [Homo
sapiens]
Length = 415
Score = 126 bits (317), Expect = 6e-29
Identities = 80/201 (39%), Positives = 112/201 (55%), Gaps = 18/201 (8%)
Query: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAAL--CLNAQGRRNGEALVRFVSEEHRDLAL 283
VV+ RGLPW S +D+ F I G A + +GR++GEA V SE+ +AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340
++ + MG RYIEV+K+ + LK +G S + A N VR+RGLPF T E
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSA------NDGFVRLRGLPFGCTKE 125
Query: 341 EVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 400
E+V FF + GI P+G+ TG+AFV FA +E A+ AL KHK+ +G RYIE
Sbjct: 126 EIVQFFSG---LEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIE 182
Query: 401 LFRSTAAEVQQVLNRFSSAPL 421
+F+S+ EV+ +S PL
Sbjct: 183 VFKSSQEEVRS----YSDPPL 199
Score = 104 bits (260), Expect = 2e-22
Identities = 98/340 (28%), Positives = 149/340 (43%), Gaps = 55/340 (16%)
Query: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
+V++RGLP++ + E+V F C I G G+ F+ +GR +G+AFV E+ + A
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70
Query: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
L+K ++ +G RYIE+F+S E+ VL P FV
Sbjct: 71 LKKDRESMGHRYIEVFKSHRTEMDWVLKHSG---------PNSADSANDGFV-------- 113
Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
RLRGLP+ T E+I+ F +I +G+ + ++ +G+ +G+AF+Q S + A A
Sbjct: 114 -RLRGLPFGCTKEEIVQFFS--GLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 170
Query: 507 KCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSPPPCKLPCLSPPS-YTFPAPAAV 565
K HK+ + RY+EVF+ S EE+ S PP K + P Y P A
Sbjct: 171 K-HKERIGHRYIEVFKSSQEEV-----------RSYSDPPLKFMSVQRPGPYDRPGTAR- 217
Query: 566 IPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMNYTAYYPSPPGSPNSLGYFPTAANLS 625
I + + + R ST Y G + + + Y G L + LS
Sbjct: 218 --RYIGIVKQAGLERMRPGAYSTGY--GGYEEYSGLSDGY----GFTTDLFGRDLSYCLS 269
Query: 626 G------------VPPQPGTVVRMQGLAYNTGVKEILNFF 653
G V G V M+GL Y +I NFF
Sbjct: 270 GMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFF 309
Score = 54.7 bits (130), Expect = 3e-07
Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 21/156 (13%)
Query: 159 ATMTEYLNFEKSSSVSRYGASQVEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKM 218
A T Y +E+ S +S + G + +S Y+HR+ D E + +G C
Sbjct: 235 AYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSE-FTVQSTTGHC--- 290
Query: 219 ELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEH 278
V RGLP+++++ DI FF LN + + + GR GEA V F + E
Sbjct: 291 --------VHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEE 340
Query: 279 RDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSN 314
A+ + + +M RYIE+ FL G SN
Sbjct: 341 AVAAMSKDRANMQHRYIEL-------FLNSTTGASN 369
Score = 50.8 bits (120), Expect = 4e-06
Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
V MRGLP+ AT ++ FF P+ + PDGR TG+A V FA E A A+
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEEAVAAM 345
Query: 388 RKHKDLLGKRYIELF 402
K + + RYIELF
Sbjct: 346 SKDRANMQHRYIELF 360
Score = 50.4 bits (119), Expect = 5e-06
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 436 QFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
+F + C+ +RGLPY AT DI +F + + VH+ + GR +G+A ++
Sbjct: 280 EFTVQSTTGHCVHMRGLPYKATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEF 335
Query: 496 KSADRAFMAAQKCHKKNMKDRYVEVF 521
+ + A +AA + NM+ RY+E+F
Sbjct: 336 ATHEEA-VAAMSKDRANMQHRYIELF 360
>gi|4826760 heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
Length = 415
Score = 126 bits (317), Expect = 6e-29
Identities = 80/201 (39%), Positives = 112/201 (55%), Gaps = 18/201 (8%)
Query: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAAL--CLNAQGRRNGEALVRFVSEEHRDLAL 283
VV+ RGLPW S +D+ F I G A + +GR++GEA V SE+ +AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAE 340
++ + MG RYIEV+K+ + LK +G S + A N VR+RGLPF T E
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSA------NDGFVRLRGLPFGCTKE 125
Query: 341 EVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 400
E+V FF + GI P+G+ TG+AFV FA +E A+ AL KHK+ +G RYIE
Sbjct: 126 EIVQFFSG---LEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIE 182
Query: 401 LFRSTAAEVQQVLNRFSSAPL 421
+F+S+ EV+ +S PL
Sbjct: 183 VFKSSQEEVRS----YSDPPL 199
Score = 104 bits (260), Expect = 2e-22
Identities = 98/340 (28%), Positives = 149/340 (43%), Gaps = 55/340 (16%)
Query: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
+V++RGLP++ + E+V F C I G G+ F+ +GR +G+AFV E+ + A
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70
Query: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
L+K ++ +G RYIE+F+S E+ VL P FV
Sbjct: 71 LKKDRESMGHRYIEVFKSHRTEMDWVLKHSG---------PNSADSANDGFV-------- 113
Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
RLRGLP+ T E+I+ F +I +G+ + ++ +G+ +G+AF+Q S + A A
Sbjct: 114 -RLRGLPFGCTKEEIVQFFS--GLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 170
Query: 507 KCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSPPPCKLPCLSPPS-YTFPAPAAV 565
K HK+ + RY+EVF+ S EE+ S PP K + P Y P A
Sbjct: 171 K-HKERIGHRYIEVFKSSQEEV-----------RSYSDPPLKFMSVQRPGPYDRPGTAR- 217
Query: 566 IPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMNYTAYYPSPPGSPNSLGYFPTAANLS 625
I + + + R ST Y G + + + Y G L + LS
Sbjct: 218 --RYIGIVKQAGLERMRPGAYSTGY--GGYEEYSGLSDGY----GFTTDLFGRDLSYCLS 269
Query: 626 G------------VPPQPGTVVRMQGLAYNTGVKEILNFF 653
G V G V M+GL Y +I NFF
Sbjct: 270 GMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFF 309
Score = 54.7 bits (130), Expect = 3e-07
Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 21/156 (13%)
Query: 159 ATMTEYLNFEKSSSVSRYGASQVEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKM 218
A T Y +E+ S +S + G + +S Y+HR+ D E + +G C
Sbjct: 235 AYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSE-FTVQSTTGHC--- 290
Query: 219 ELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEH 278
V RGLP+++++ DI FF LN + + + GR GEA V F + E
Sbjct: 291 --------VHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEE 340
Query: 279 RDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSN 314
A+ + + +M RYIE+ FL G SN
Sbjct: 341 AVAAMSKDRANMQHRYIEL-------FLNSTTGASN 369
Score = 50.8 bits (120), Expect = 4e-06
Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
V MRGLP+ AT ++ FF P+ + PDGR TG+A V FA E A A+
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEEAVAAM 345
Query: 388 RKHKDLLGKRYIELF 402
K + + RYIELF
Sbjct: 346 SKDRANMQHRYIELF 360
Score = 50.4 bits (119), Expect = 5e-06
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 436 QFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
+F + C+ +RGLPY AT DI +F + + VH+ + GR +G+A ++
Sbjct: 280 EFTVQSTTGHCVHMRGLPYKATENDIYNFF----SPLNPVRVHIEIGPDGRVTGEADVEF 335
Query: 496 KSADRAFMAAQKCHKKNMKDRYVEVF 521
+ + A +AA + NM+ RY+E+F
Sbjct: 336 ATHEEA-VAAMSKDRANMQHRYIELF 360
>gi|149193319 G-rich RNA sequence binding factor 1 isoform 2 [Homo
sapiens]
Length = 318
Score = 116 bits (290), Expect = 8e-26
Identities = 92/326 (28%), Positives = 150/326 (46%), Gaps = 60/326 (18%)
Query: 239 QDIARFFKGLNIAKG--GAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIE 296
+D+ FF I G G LN G+R G+AL+ SE+ AL++H+ +MG RY+E
Sbjct: 2 EDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 61
Query: 297 VYKATGED---FLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPIT 353
VY+ ED +K S+ V N +VR+RGLP++ +++V FF +
Sbjct: 62 VYEINNEDVDALMKSLQVKSSPVV------NDGVVRLRGLPYSCNEKDIVDFFAGLNIV- 114
Query: 354 GGKEGILFV-TYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
I FV Y R TG+A+V F E A AL KH++ +G RYIE+F S EV+
Sbjct: 115 ----DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 170
Query: 413 LNRFSSAPLIPLPTPPIIP---------------------------VLPQQFVP------ 439
+ + + PT I LP++ VP
Sbjct: 171 VGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKE-VPEKLPEA 229
Query: 440 ----PTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
T+ + +RGLP+ A +DI++F ++ + M + G+ +G+A +
Sbjct: 230 ADFGTTSSLHFVHMRGLPFQANAQDIINFF----APLKPVRITMEYSSSGKATGEADVHF 285
Query: 496 KSADRAFMAAQKCHKKNMKDRYVEVF 521
++ + A +AA + ++ RY+E+F
Sbjct: 286 ETHEDA-VAAMLKDRSHVHHRYIELF 310
Score = 84.3 bits (207), Expect = 3e-16
Identities = 53/190 (27%), Positives = 97/190 (51%), Gaps = 25/190 (13%)
Query: 340 EEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYI 399
E+V+ FF C I G+ GI F+ DG+ GDA + E+ Q AL KH+ +G+RY+
Sbjct: 2 EDVLNFFSD-CRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYV 60
Query: 400 ELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIE 459
E++ +V ++ + + + P++ +RLRGLPY+ +
Sbjct: 61 EVYEINNEDVDALMKS------LQVKSSPVVN------------DGVVRLRGLPYSCNEK 102
Query: 460 DILDFLGEFATDIRTHGVHMVLNHQGR-PSGDAFIQMKSADRAFMAAQKCHKKNMKDRYV 518
DI+DF + + V++++GR +G+A++Q + + A A K H++ + +RY+
Sbjct: 103 DIVDFFA----GLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLK-HREEIGNRYI 157
Query: 519 EVFQCSAEEM 528
E+F E+
Sbjct: 158 EIFPSRRNEV 167
Score = 80.5 bits (197), Expect = 5e-15
Identities = 68/238 (28%), Positives = 99/238 (41%), Gaps = 59/238 (24%)
Query: 217 KMELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRR-NGEALVRFVS 275
K + ++ VVR RGLP+ +++DI FF GLNI ++ +GRR GEA V+F
Sbjct: 80 KSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIV--DITFVMDYRGRRKTGEAYVQFEE 137
Query: 276 EEHRDLALQRHKHHMGTRYIEVYKA----------------------------------- 300
E + AL +H+ +G RYIE++ +
Sbjct: 138 PEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEE 197
Query: 301 --TGEDFLKIAGGTSN--------------EVAQFLSKENQVIVRMRGLPFTATAEEVVA 344
ED + S E A F + + V MRGLPF A A++++
Sbjct: 198 HEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIIN 257
Query: 345 FFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 402
FF P+ I G+ TG+A V F E A A+ K + + RYIELF
Sbjct: 258 FFAPLKPVR-----ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 310
Score = 51.2 bits (121), Expect = 3e-06
Identities = 25/75 (33%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 458 IEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRY 517
+ED+L+F + +G+H +LN G+ GDA I+M+S A +K H+ M RY
Sbjct: 1 MEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEK-HRMYMGQRY 59
Query: 518 VEVFQCSAEEMNFVL 532
VEV++ + E+++ ++
Sbjct: 60 VEVYEINNEDVDALM 74
Score = 47.4 bits (111), Expect = 4e-05
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 203 PERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQ 262
PE++ + GT S + V RGLP+Q++ QDI FF L + + ++
Sbjct: 223 PEKLPEAADFGTTSSLHF------VHMRGLPFQANAQDIINFFAPLKPVR--ITMEYSSS 274
Query: 263 GRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVY 298
G+ GEA V F + E A+ + + H+ RYIE++
Sbjct: 275 GKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 310
>gi|19923345 RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 102 bits (253), Expect = 2e-21
Identities = 88/343 (25%), Positives = 154/343 (44%), Gaps = 57/343 (16%)
Query: 223 DNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLA 282
D+ V G+P+ + + D+ FF GL + L + GR NG LV+F+S + A
Sbjct: 302 DDLYVSVHGMPFSAMENDVRDFFHGLRV--DAVHLLKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 283 LQRHKHHMGTRYIEVYKATGEDFLKIAG-----------GTSNEVAQFLSK--------- 322
L+R++ M RY+EV AT ++ G G ++ Q L +
Sbjct: 360 LKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKR 419
Query: 323 -------ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAF 374
E V ++GLPF A + V+ FF + + E +++ Y P+G+ TG+ F
Sbjct: 420 SRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIV----EDSIYIAYGPNGKATGEGF 475
Query: 375 VLFACEEYAQNALRKHKDLLGKRYIELFRSTAA-------EVQQVLNRFS--SAPLIPLP 425
V F E + AL +HK +G R+I++ T +++ L FS +I P
Sbjct: 476 VEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNP 535
Query: 426 TPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQG 485
+ + + C + +P++ T D+L FL D + VH+++++ G
Sbjct: 536 EGDV-----------NSAKVCAHITNIPFSITKMDVLQFLEGIPVD--ENAVHVLVDNNG 582
Query: 486 RPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEM 528
+ G A +Q K+ D A +++ H+K + R V + E+M
Sbjct: 583 QGLGQALVQFKNEDDA-RKSERLHRKKLNGREAFVHVVTLEDM 624
Score = 81.3 bits (199), Expect = 3e-15
Identities = 110/484 (22%), Positives = 180/484 (37%), Gaps = 88/484 (18%)
Query: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
V +GLP+++ ++ + FFK L+I + + G+ GE V F +E AL RH
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 287 KHHMGTRYIEVYKATGEDFLKIAGGTSNEVAQFLSKENQVIVRMRG-------------L 333
K +MG R+I+V+ T + L+ + F + ++I+ G +
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKVCAHITNI 551
Query: 334 PFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDL 393
PF+ T +V+ F + P+ + + + +G+ G A V F E+ A+ + R H+
Sbjct: 552 PFSITKMDVLQFL-EGIPV--DENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKK 608
Query: 394 LGKRYIELFRSTAAEVQQVLN----RFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDCIRL 449
L R + T +++++ + +P+P P +P +P +P
Sbjct: 609 LNGREAFVHVVTLEDMREIEKNPPAQGKKGLKMPVPGNPAVPGMPNAGLPGV-------- 660
Query: 450 RGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCH 509
GLP A L G + I + G L G PS + AF+
Sbjct: 661 -GLPSAGLPGAGLPSTGLPGSAITSAG----LPGAGMPSA-GIPSAGGEEHAFLTVGSKE 714
Query: 510 KKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSPPPCKLPCLSPPSYTFPAPAAVIPTE 569
N NF G N G PP P L ++ P +P+
Sbjct: 715 ANN------------GPPFNFPGNFGGSNAFG---PPIPPPGLGGGAFGDARPG--MPSV 757
Query: 570 AAIYQPSVILN-------PRALQPSTAYYPAGTQLFMNYTAYYPSPPG----------SP 612
P + L+ P L + + G Q F N PPG +P
Sbjct: 758 GNSGLPGLGLDVPGFGGGPNNLSGPSG-FGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAP 816
Query: 613 NSLGYFPTAANLSGVPPQPG-------------------TVVRMQGLAYNTGVKEILNFF 653
LG P G P PG TV+++Q + + + EIL+FF
Sbjct: 817 GHLGGPPAFGPGPGPGPGPGPIHIGGPPGFASSSGKPGPTVIKVQNMPFTVSIDEILDFF 876
Query: 654 QGYQ 657
GYQ
Sbjct: 877 YGYQ 880
Score = 50.8 bits (120), Expect = 4e-06
Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 22/151 (14%)
Query: 421 LIPLPTPPIIPVLPQQFVPPTNVRDC--------IRLRGLPYAATIEDILDFLGEFATDI 472
L P+ P+ PV P Q ++V+ + + G+P++A D+ DF +
Sbjct: 272 LNPMFLGPLNPVNPIQMNSQSSVKPLPINPDDLYVSVHGMPFSAMENDVRDFFH----GL 327
Query: 473 RTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVL 532
R VH++ +H GR +G+ ++ S F A ++ ++ M RYVEV A E +V
Sbjct: 328 RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKR-NRMLMIQRYVEV--SPATERQWVA 384
Query: 533 MGG--TLNRN-----GLSPPPCKLPCLSPPS 556
GG T +N PPP LP PS
Sbjct: 385 AGGHITFKQNMGPSGQTHPPPQTLPRSKSPS 415
Score = 39.3 bits (90), Expect = 0.012
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
V+R +GLP + DI FF GL I GG ++ G GEA + F ++E L + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGG----VHIVGGELGEAFIVFATDEDARLGMMR 59
Score = 37.7 bits (86), Expect = 0.035
Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
I+++ +P+ +I++ILDF + + V + N +G P+G+A + +S D A A
Sbjct: 858 IKVQNMPFTVSIDEILDFF--YGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVI 915
Query: 507 KCHKKNMKDRYVEV 520
+ + + R V++
Sbjct: 916 DLNDRPIGSRKVKL 929
Score = 36.6 bits (83), Expect = 0.079
Identities = 46/194 (23%), Positives = 72/194 (37%), Gaps = 18/194 (9%)
Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
IRL+GLP A DI F I GVH+V G G+AFI + + A +
Sbjct: 5 IRLQGLPIVAGTMDIRHFFS--GLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMM 58
Query: 507 KCHKKNMKDRYVEVFQCSAEEMNFV-LMGGTLNRNGLSPPPCKLPCLSPPSYTFPAPAAV 565
+ + + E N + L L PP PP + +
Sbjct: 59 RTGGTIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPSSGMSSRVN 118
Query: 566 IPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMNYTAYYPSPP-------GSPNSLGYF 618
+PT + + +P + +T+ + + + TA + P GSP
Sbjct: 119 LPTTVSNFNNP---SPSVVTATTSVHESNKNIQTFSTASVGTAPPNMGASFGSPTFSSTV 175
Query: 619 P-TAANLSGVPPQP 631
P TA+ ++ VPP P
Sbjct: 176 PSTASPMNTVPPPP 189
Score = 35.8 bits (81), Expect = 0.13
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 326 VIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQN 385
V++R++GLP A ++ FF GG + G G+AF++FA +E A+
Sbjct: 3 VVIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV-------GGELGEAFIVFATDEDARL 55
Query: 386 ALRKHKDLLGKRYIELFRSTAAEVQQVL----NRFSSAPL 421
+ + + + L S+ E+Q ++ RF +A L
Sbjct: 56 GMMRTGGTIKGSKVTLLLSSKTEMQNMIELSRRRFETANL 95
Score = 35.8 bits (81), Expect = 0.13
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 322 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEE 381
K +++++ +PFT + +E++ FF + I G + G PTG+A V F +
Sbjct: 852 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGS---VCLKYNEKGMPTGEAMVAFESRD 908
Query: 382 YAQNALRKHKDL-LGKRYIEL 401
A A+ D +G R ++L
Sbjct: 909 EATAAVIDLNDRPIGSRKVKL 929
>gi|23510462 RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 102 bits (253), Expect = 2e-21
Identities = 88/343 (25%), Positives = 154/343 (44%), Gaps = 57/343 (16%)
Query: 223 DNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLA 282
D+ V G+P+ + + D+ FF GL + L + GR NG LV+F+S + A
Sbjct: 302 DDLYVSVHGMPFSAMENDVRDFFHGLRV--DAVHLLKDHVGRNNGNGLVKFLSPQDTFEA 359
Query: 283 LQRHKHHMGTRYIEVYKATGEDFLKIAG-----------GTSNEVAQFLSK--------- 322
L+R++ M RY+EV AT ++ G G ++ Q L +
Sbjct: 360 LKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKR 419
Query: 323 -------ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAF 374
E V ++GLPF A + V+ FF + + E +++ Y P+G+ TG+ F
Sbjct: 420 SRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIV----EDSIYIAYGPNGKATGEGF 475
Query: 375 VLFACEEYAQNALRKHKDLLGKRYIELFRSTAA-------EVQQVLNRFS--SAPLIPLP 425
V F E + AL +HK +G R+I++ T +++ L FS +I P
Sbjct: 476 VEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNP 535
Query: 426 TPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQG 485
+ + + C + +P++ T D+L FL D + VH+++++ G
Sbjct: 536 EGDV-----------NSAKVCAHITNIPFSITKMDVLQFLEGIPVD--ENAVHVLVDNNG 582
Query: 486 RPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEM 528
+ G A +Q K+ D A +++ H+K + R V + E+M
Sbjct: 583 QGLGQALVQFKNEDDA-RKSERLHRKKLNGREAFVHVVTLEDM 624
Score = 81.3 bits (199), Expect = 3e-15
Identities = 110/484 (22%), Positives = 180/484 (37%), Gaps = 88/484 (18%)
Query: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
V +GLP+++ ++ + FFK L+I + + G+ GE V F +E AL RH
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 287 KHHMGTRYIEVYKATGEDFLKIAGGTSNEVAQFLSKENQVIVRMRG-------------L 333
K +MG R+I+V+ T + L+ + F + ++I+ G +
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKVCAHITNI 551
Query: 334 PFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDL 393
PF+ T +V+ F + P+ + + + +G+ G A V F E+ A+ + R H+
Sbjct: 552 PFSITKMDVLQFL-EGIPV--DENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKK 608
Query: 394 LGKRYIELFRSTAAEVQQVLN----RFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDCIRL 449
L R + T +++++ + +P+P P +P +P +P
Sbjct: 609 LNGREAFVHVVTLEDMREIEKNPPAQGKKGLKMPVPGNPAVPGMPNAGLPGV-------- 660
Query: 450 RGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCH 509
GLP A L G + I + G L G PS + AF+
Sbjct: 661 -GLPSAGLPGAGLPSTGLPGSAITSAG----LPGAGMPSA-GIPSAGGEEHAFLTVGSKE 714
Query: 510 KKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSPPPCKLPCLSPPSYTFPAPAAVIPTE 569
N NF G N G PP P L ++ P +P+
Sbjct: 715 ANN------------GPPFNFPGNFGGSNAFG---PPIPPPGLGGGAFGDARPG--MPSV 757
Query: 570 AAIYQPSVILN-------PRALQPSTAYYPAGTQLFMNYTAYYPSPPG----------SP 612
P + L+ P L + + G Q F N PPG +P
Sbjct: 758 GNSGLPGLGLDVPGFGGGPNNLSGPSG-FGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAP 816
Query: 613 NSLGYFPTAANLSGVPPQPG-------------------TVVRMQGLAYNTGVKEILNFF 653
LG P G P PG TV+++Q + + + EIL+FF
Sbjct: 817 GHLGGPPAFGPGPGPGPGPGPIHIGGPPGFASSSGKPGPTVIKVQNMPFTVSIDEILDFF 876
Query: 654 QGYQ 657
GYQ
Sbjct: 877 YGYQ 880
Score = 50.8 bits (120), Expect = 4e-06
Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 22/151 (14%)
Query: 421 LIPLPTPPIIPVLPQQFVPPTNVRDC--------IRLRGLPYAATIEDILDFLGEFATDI 472
L P+ P+ PV P Q ++V+ + + G+P++A D+ DF +
Sbjct: 272 LNPMFLGPLNPVNPIQMNSQSSVKPLPINPDDLYVSVHGMPFSAMENDVRDFFH----GL 327
Query: 473 RTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVL 532
R VH++ +H GR +G+ ++ S F A ++ ++ M RYVEV A E +V
Sbjct: 328 RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKR-NRMLMIQRYVEV--SPATERQWVA 384
Query: 533 MGG--TLNRN-----GLSPPPCKLPCLSPPS 556
GG T +N PPP LP PS
Sbjct: 385 AGGHITFKQNMGPSGQTHPPPQTLPRSKSPS 415
Score = 39.3 bits (90), Expect = 0.012
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
V+R +GLP + DI FF GL I GG ++ G GEA + F ++E L + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGG----VHIVGGELGEAFIVFATDEDARLGMMR 59
Score = 37.7 bits (86), Expect = 0.035
Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
I+++ +P+ +I++ILDF + + V + N +G P+G+A + +S D A A
Sbjct: 858 IKVQNMPFTVSIDEILDFF--YGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVI 915
Query: 507 KCHKKNMKDRYVEV 520
+ + + R V++
Sbjct: 916 DLNDRPIGSRKVKL 929
Score = 36.6 bits (83), Expect = 0.079
Identities = 46/194 (23%), Positives = 72/194 (37%), Gaps = 18/194 (9%)
Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
IRL+GLP A DI F I GVH+V G G+AFI + + A +
Sbjct: 5 IRLQGLPIVAGTMDIRHFFS--GLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMM 58
Query: 507 KCHKKNMKDRYVEVFQCSAEEMNFV-LMGGTLNRNGLSPPPCKLPCLSPPSYTFPAPAAV 565
+ + + E N + L L PP PP + +
Sbjct: 59 RTGGTIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPSSGMSSRVN 118
Query: 566 IPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMNYTAYYPSPP-------GSPNSLGYF 618
+PT + + +P + +T+ + + + TA + P GSP
Sbjct: 119 LPTTVSNFNNP---SPSVVTATTSVHESNKNIQTFSTASVGTAPPNMGASFGSPTFSSTV 175
Query: 619 P-TAANLSGVPPQP 631
P TA+ ++ VPP P
Sbjct: 176 PSTASPMNTVPPPP 189
Score = 35.8 bits (81), Expect = 0.13
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 326 VIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQN 385
V++R++GLP A ++ FF GG + G G+AF++FA +E A+
Sbjct: 3 VVIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV-------GGELGEAFIVFATDEDARL 55
Query: 386 ALRKHKDLLGKRYIELFRSTAAEVQQVL----NRFSSAPL 421
+ + + + L S+ E+Q ++ RF +A L
Sbjct: 56 GMMRTGGTIKGSKVTLLLSSKTEMQNMIELSRRRFETANL 95
Score = 35.8 bits (81), Expect = 0.13
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 322 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEE 381
K +++++ +PFT + +E++ FF + I G + G PTG+A V F +
Sbjct: 852 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGS---VCLKYNEKGMPTGEAMVAFESRD 908
Query: 382 YAQNALRKHKDL-LGKRYIEL 401
A A+ D +G R ++L
Sbjct: 909 EATAAVIDLNDRPIGSRKVKL 929
>gi|14141157 heterogeneous nuclear ribonucleoprotein H3 isoform a
[Homo sapiens]
Length = 346
Score = 76.3 bits (186), Expect = 9e-14
Identities = 42/83 (50%), Positives = 55/83 (66%), Gaps = 3/83 (3%)
Query: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
VR+RGLPF + EE+V FF Q I GI GR TG+AFV FA +E A+NAL
Sbjct: 18 VRLRGLPFGCSKEEIVQFF-QGLEIV--PNGITLTMDYQGRSTGEAFVQFASKEIAENAL 74
Query: 388 RKHKDLLGKRYIELFRSTAAEVQ 410
KHK+ +G RYIE+FRS+ +E++
Sbjct: 75 GKHKERIGHRYIEIFRSSRSEIK 97
Score = 73.2 bits (178), Expect = 8e-13
Identities = 34/75 (45%), Positives = 51/75 (68%)
Query: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
VR RGLP+ S ++I +FF+GL I G L ++ QGR GEA V+F S+E + AL +H
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77
Query: 287 KHHMGTRYIEVYKAT 301
K +G RYIE+++++
Sbjct: 78 KERIGHRYIEIFRSS 92
Score = 59.7 bits (143), Expect = 9e-09
Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 14/114 (12%)
Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
+RLRGLP+ + E+I+ F +I +G+ + +++QGR +G+AF+Q S + A A
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQ--GLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 507 KCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSPPPCKLPCLSPPSYTFP 560
K HK+ + RY+E+F+ S E+ G PP +L P Y P
Sbjct: 76 K-HKERIGHRYIEIFRSSRSEI-----------KGFYDPPRRLLGQRPGPYDRP 117
Score = 53.9 bits (128), Expect = 5e-07
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
V RGLP+++++ DIA FF LN + + + A GR GEA V FV+ E A+ +
Sbjct: 197 VHMRGLPFRATENDIANFFSPLNPIR--VHIDIGADGRATGEADVEFVTHEDAVAAMSKD 254
Query: 287 KHHMGTRYIEVY 298
K++M RYIE++
Sbjct: 255 KNNMQHRYIELF 266
Score = 50.1 bits (118), Expect = 7e-06
Identities = 32/75 (42%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
V MRGLPF AT ++ FF PI + DGR TG+A V F E A A+
Sbjct: 197 VHMRGLPFRATENDIANFFSPLNPIR-----VHIDIGADGRATGEADVEFVTHEDAVAAM 251
Query: 388 RKHKDLLGKRYIELF 402
K K+ + RYIELF
Sbjct: 252 SKDKNNMQHRYIELF 266
Score = 44.7 bits (104), Expect = 3e-04
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
+ +RGLP+ AT DI +F + + VH+ + GR +G+A ++ + + A +AA
Sbjct: 197 VHMRGLPFRATENDIANFF----SPLNPIRVHIDIGADGRATGEADVEFVTHEDA-VAAM 251
Query: 507 KCHKKNMKDRYVEVF 521
K NM+ RY+E+F
Sbjct: 252 SKDKNNMQHRYIELF 266
>gi|14141159 heterogeneous nuclear ribonucleoprotein H3 isoform b
[Homo sapiens]
Length = 331
Score = 76.3 bits (186), Expect = 9e-14
Identities = 42/83 (50%), Positives = 55/83 (66%), Gaps = 3/83 (3%)
Query: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
VR+RGLPF + EE+V FF Q I GI GR TG+AFV FA +E A+NAL
Sbjct: 18 VRLRGLPFGCSKEEIVQFF-QGLEIV--PNGITLTMDYQGRSTGEAFVQFASKEIAENAL 74
Query: 388 RKHKDLLGKRYIELFRSTAAEVQ 410
KHK+ +G RYIE+FRS+ +E++
Sbjct: 75 GKHKERIGHRYIEIFRSSRSEIK 97
Score = 73.2 bits (178), Expect = 8e-13
Identities = 34/75 (45%), Positives = 51/75 (68%)
Query: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
VR RGLP+ S ++I +FF+GL I G L ++ QGR GEA V+F S+E + AL +H
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77
Query: 287 KHHMGTRYIEVYKAT 301
K +G RYIE+++++
Sbjct: 78 KERIGHRYIEIFRSS 92
Score = 59.7 bits (143), Expect = 9e-09
Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 14/114 (12%)
Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
+RLRGLP+ + E+I+ F +I +G+ + +++QGR +G+AF+Q S + A A
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQ--GLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 507 KCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSPPPCKLPCLSPPSYTFP 560
K HK+ + RY+E+F+ S E+ G PP +L P Y P
Sbjct: 76 K-HKERIGHRYIEIFRSSRSEI-----------KGFYDPPRRLLGQRPGPYDRP 117
Score = 53.9 bits (128), Expect = 5e-07
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
V RGLP+++++ DIA FF LN + + + A GR GEA V FV+ E A+ +
Sbjct: 182 VHMRGLPFRATENDIANFFSPLNPIR--VHIDIGADGRATGEADVEFVTHEDAVAAMSKD 239
Query: 287 KHHMGTRYIEVY 298
K++M RYIE++
Sbjct: 240 KNNMQHRYIELF 251
Score = 50.1 bits (118), Expect = 7e-06
Identities = 32/75 (42%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
V MRGLPF AT ++ FF PI + DGR TG+A V F E A A+
Sbjct: 182 VHMRGLPFRATENDIANFFSPLNPIR-----VHIDIGADGRATGEADVEFVTHEDAVAAM 236
Query: 388 RKHKDLLGKRYIELF 402
K K+ + RYIELF
Sbjct: 237 SKDKNNMQHRYIELF 251
Score = 44.7 bits (104), Expect = 3e-04
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
+ +RGLP+ AT DI +F + + VH+ + GR +G+A ++ + + A +AA
Sbjct: 182 VHMRGLPFRATENDIANFF----SPLNPIRVHIDIGADGRATGEADVEFVTHEDA-VAAM 236
Query: 507 KCHKKNMKDRYVEVF 521
K NM+ RY+E+F
Sbjct: 237 SKDKNNMQHRYIELF 251
>gi|118722349 RNA binding motif protein 12B [Homo sapiens]
Length = 1001
Score = 67.8 bits (164), Expect = 3e-11
Identities = 83/399 (20%), Positives = 163/399 (40%), Gaps = 58/399 (14%)
Query: 159 ATMTEYLNFEKSSSVSR----YGASQVEDMGNIILAMISEPYNHRFSDPERVNYKFESGT 214
A M + + +++ V R G S V+ + N I ++ E N + + F +
Sbjct: 77 AEMQKTIEMKRTDRVGRGRPGSGTSGVDSLSNFIESVKEEASNSGYGSSINQDAGFHTNG 136
Query: 215 CSKMELID--------DNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRN 266
L +N + RGLP+ ++ D+ FF GL + G + GR N
Sbjct: 137 TGHGNLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNN 194
Query: 267 GEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSNEVAQFLSKENQ- 325
G+A+V+F S L+ H+ MG+R+IEV + + + +++ G E E
Sbjct: 195 GDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGNAVKEGDVLRRSEEHS 254
Query: 326 -----------------------------VIVRMRGLPFTATAEEVVAFFGQHCPITGGK 356
V ++ L + ++ FF + +T
Sbjct: 255 PPRGINDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSIDERDLRNFF-RGTDLT--D 311
Query: 357 EGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRF 416
E I F+ Y D T AFV+F + AL HK +L R + + + ++ + + R+
Sbjct: 312 EQIRFL-YKDENRTRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFIARY 370
Query: 417 SS--APLIPLPTPPIIPVLPQQFVPPTN--VRDCIRLRGLPYAATIEDILDFLGEFATDI 472
+ + P + Q++ N + CI +R P+ T ++ F +F +
Sbjct: 371 EKKRSGSLERDRPGHV---SQKYSQEGNSGQKLCIYIRNFPFDVTKVEVQKFFADFL--L 425
Query: 473 RTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKK 511
++++ + +G G+A ++ KS ++A M A++ +++
Sbjct: 426 AEDDIYLLYDDKGVGLGEALVKFKSEEQA-MKAERLNRR 463
Score = 63.2 bits (152), Expect = 8e-10
Identities = 57/236 (24%), Positives = 91/236 (38%), Gaps = 66/236 (27%)
Query: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
V+R GLP+ + DI FF GL I GG + G GEA + F ++E A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 286 HKHHMGTRYIEVYKATGEDFLKIA------------------------------------ 309
+ +E++ ++ + K
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVDSLSNFIESVKEEASN 119
Query: 310 ---GGTSNEVAQF-----------------LSKENQVIVRMRGLPFTATAEEVVAFFGQH 349
G + N+ A F L EN + +RGLP+ ++V FF
Sbjct: 120 SGYGSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPYLF-LRGLPYLVNEDDVRVFFSGL 178
Query: 350 CPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRST 405
C +G++F+ + DGR GDA V FA A L+ H+ +G R+IE+ + +
Sbjct: 179 C-----VDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGS 229
Score = 53.1 bits (126), Expect = 8e-07
Identities = 72/272 (26%), Positives = 102/272 (37%), Gaps = 69/272 (25%)
Query: 326 VIVRMRGLPFTATAEEVVAFF--------GQHCPITGGKEG---ILFVTYPDGRPT---G 371
V++R+ GLPF A ++ FF G H I GG+ G I+F T D R
Sbjct: 3 VVIRLLGLPFIAGPVDIRHFFTGLTIPDGGVH--IIGGEIGEAFIIFATDEDARRAISRS 60
Query: 372 DAFV--------LFACEEYAQNALRKHKDLLGK--------------RYIELFRSTAAE- 408
F+ L + E + K D +G+ +IE + A+
Sbjct: 61 GGFIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVDSLSNFIESVKEEASNS 120
Query: 409 -----VQQVL----NRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIE 459
+ Q N L P T P+ P F LRGLPY +
Sbjct: 121 GYGSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPYLF-----------LRGLPYLVNED 169
Query: 460 DILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVE 519
D+ F D GV + +H GR +GDA ++ S A KCH+ M R++E
Sbjct: 170 DVRVFFSGLCVD----GVIFLKHHDGRNNGDAIVKFASCVDA-SGGLKCHRSFMGSRFIE 224
Query: 520 VFQCSAEEM-----NFVLMGGTLNRNGLSPPP 546
V Q S ++ N V G L R+ PP
Sbjct: 225 VMQGSEQQWIEFGGNAVKEGDVLRRSEEHSPP 256
Score = 39.7 bits (91), Expect = 0.009
Identities = 46/208 (22%), Positives = 80/208 (38%), Gaps = 22/208 (10%)
Query: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
V + L ++D+ FF+G ++ + R A V F + + + AL H
Sbjct: 286 VHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTR-YAFVMFKTLKDYNTALSLH 344
Query: 287 KHHMGTRYIEVYKATGEDFLKIA----------------GGTSNEVAQFLSKENQVIVRM 330
K + R + + + + LK G S + +Q + ++ + +
Sbjct: 345 KTVLQYRPVHIDPISRKQMLKFIARYEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCIYI 404
Query: 331 RGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPD-GRPTGDAFVLFACEEYAQNALRK 389
R PF T EV FF E +++ Y D G G+A V F EE A A R
Sbjct: 405 RNFPFDVTKVEVQKFFADFLL----AEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERL 460
Query: 390 HKDLLGKRYIELFRSTAAEVQQVLNRFS 417
++ + L + A++Q+ FS
Sbjct: 461 NRRRFLGTEVLLRLISEAQIQEFGVNFS 488
Score = 37.4 bits (85), Expect = 0.046
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
I++ LP+ A + +ILDF + I V + N QG P+G+A + M + + A A +
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYR--IIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 984
Query: 507 KCHKKNMKDRYVEV 520
+ + + R V++
Sbjct: 985 DLNDRPVGPRKVKL 998
Score = 32.7 bits (73), Expect = 1.1
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 225 TVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVS 275
T ++ LP++++ +I FF G I ++ N QG GEA+V ++
Sbjct: 925 TPIKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMIN 975
Score = 30.8 bits (68), Expect = 4.3
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 633 TVVRMQGLAYNTGVKEILNFFQGYQYATEDGLIHTNDQ 670
T +++ L + V EIL+FF GY+ + I N+Q
Sbjct: 925 TPIKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQ 962
>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 58.9 bits (141), Expect = 1e-08
Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 18/171 (10%)
Query: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
V+ RG P+ +++++ F L + NA G + G V F +EE AL+ +
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLKPV--AIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 287 KHHMGTRYIEVYKATGEDFLKIAGGTS-----------NEVAQFLSKENQVIVRMRGLPF 335
+ +MG RYIEV++ K A + NE + L++ ++ V R LP+
Sbjct: 354 REYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFV--RNLPY 411
Query: 336 TATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
T+T E++ F ++ P++ I +T +P G AF+ F E+A A
Sbjct: 412 TSTEEDLEKLFSKYGPLSELHYPIDSLT---KKPKGFAFITFMFPEHAVKA 459
Score = 50.4 bits (119), Expect = 5e-06
Identities = 49/198 (24%), Positives = 80/198 (40%), Gaps = 23/198 (11%)
Query: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
V++RG PF T + V+ F P+ I V G TG FV F+ EE + AL
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLKPVA-----IRIVRNAHGNKTGYIFVDFSNEEEVKQAL 350
Query: 388 RKHKDLLGKRYIELFR-----STAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTN 442
+ +++ +G RYIE+FR +T + + L + + FV
Sbjct: 351 KCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFV---- 406
Query: 443 VRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAF 502
R LPY +T ED+ ++ H + + + +P G AFI + A
Sbjct: 407 -------RNLPYTSTEEDLEKLFSKYGPLSELH--YPIDSLTKKPKGFAFITFMFPEHAV 457
Query: 503 MAAQKCHKKNMKDRYVEV 520
A + + + R + V
Sbjct: 458 KAYSEVDGQVFQGRMLHV 475
Score = 42.4 bits (98), Expect = 0.001
Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
++LRG P+ T +++++FL ++ + +V N G +G F+ + + A
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAP----LKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQAL- 350
Query: 507 KCHKKNMKDRYVEVFQ 522
KC+++ M RY+EVF+
Sbjct: 351 KCNREYMGGRYIEVFR 366
>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 58.9 bits (141), Expect = 1e-08
Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 18/171 (10%)
Query: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
V+ RG P+ +++++ F L + NA G + G V F +EE AL+ +
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLKPV--AIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 287 KHHMGTRYIEVYKATGEDFLKIAGGTS-----------NEVAQFLSKENQVIVRMRGLPF 335
+ +MG RYIEV++ K A + NE + L++ ++ V R LP+
Sbjct: 354 REYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFV--RNLPY 411
Query: 336 TATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
T+T E++ F ++ P++ I +T +P G AF+ F E+A A
Sbjct: 412 TSTEEDLEKLFSKYGPLSELHYPIDSLT---KKPKGFAFITFMFPEHAVKA 459
Score = 50.4 bits (119), Expect = 5e-06
Identities = 49/198 (24%), Positives = 80/198 (40%), Gaps = 23/198 (11%)
Query: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
V++RG PF T + V+ F P+ I V G TG FV F+ EE + AL
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLKPVA-----IRIVRNAHGNKTGYIFVDFSNEEEVKQAL 350
Query: 388 RKHKDLLGKRYIELFR-----STAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTN 442
+ +++ +G RYIE+FR +T + + L + + FV
Sbjct: 351 KCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFV---- 406
Query: 443 VRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAF 502
R LPY +T ED+ ++ H + + + +P G AFI + A
Sbjct: 407 -------RNLPYTSTEEDLEKLFSKYGPLSELH--YPIDSLTKKPKGFAFITFMFPEHAV 457
Query: 503 MAAQKCHKKNMKDRYVEV 520
A + + + R + V
Sbjct: 458 KAYSEVDGQVFQGRMLHV 475
Score = 42.4 bits (98), Expect = 0.001
Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
++LRG P+ T +++++FL ++ + +V N G +G F+ + + A
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAP----LKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQAL- 350
Query: 507 KCHKKNMKDRYVEVFQ 522
KC+++ M RY+EVF+
Sbjct: 351 KCNREYMGGRYIEVFR 366
>gi|226497574 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 58.9 bits (141), Expect = 1e-08
Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 18/171 (10%)
Query: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRH 286
V+ RG P+ +++++ F L + NA G + G V F +EE AL+ +
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLKPV--AIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 287 KHHMGTRYIEVYKATGEDFLKIAGGTS-----------NEVAQFLSKENQVIVRMRGLPF 335
+ +MG RYIEV++ K A + NE + L++ ++ V R LP+
Sbjct: 354 REYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFV--RNLPY 411
Query: 336 TATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
T+T E++ F ++ P++ I +T +P G AF+ F E+A A
Sbjct: 412 TSTEEDLEKLFSKYGPLSELHYPIDSLT---KKPKGFAFITFMFPEHAVKA 459
Score = 50.4 bits (119), Expect = 5e-06
Identities = 49/198 (24%), Positives = 80/198 (40%), Gaps = 23/198 (11%)
Query: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
V++RG PF T + V+ F P+ I V G TG FV F+ EE + AL
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLKPVA-----IRIVRNAHGNKTGYIFVDFSNEEEVKQAL 350
Query: 388 RKHKDLLGKRYIELFR-----STAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTN 442
+ +++ +G RYIE+FR +T + + L + + FV
Sbjct: 351 KCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFV---- 406
Query: 443 VRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAF 502
R LPY +T ED+ ++ H + + + +P G AFI + A
Sbjct: 407 -------RNLPYTSTEEDLEKLFSKYGPLSELH--YPIDSLTKKPKGFAFITFMFPEHAV 457
Query: 503 MAAQKCHKKNMKDRYVEV 520
A + + + R + V
Sbjct: 458 KAYSEVDGQVFQGRMLHV 475
Score = 42.4 bits (98), Expect = 0.001
Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
++LRG P+ T +++++FL ++ + +V N G +G F+ + + A
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAP----LKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQAL- 350
Query: 507 KCHKKNMKDRYVEVFQ 522
KC+++ M RY+EVF+
Sbjct: 351 KCNREYMGGRYIEVFR 366
>gi|42475558 SMG-7 homolog isoform 1 [Homo sapiens]
Length = 1137
Score = 42.4 bits (98), Expect = 0.001
Identities = 30/103 (29%), Positives = 40/103 (38%), Gaps = 8/103 (7%)
Query: 537 LNRNGLSPPPCKLPCLSPPSYTFPAPAAV-----IPTEAAIYQPSVILNPRALQPSTAYY 591
++ G PP P PP+Y P P A A + P L P A P+
Sbjct: 649 IHHPGAFPPLPSRPGFPPPTYVIPPPVAFSMGSGYTFPAGVSVPGTFLQPTAHSPAGNQV 708
Query: 592 PAGTQLFMNYTAYYPSPPGSPN---SLGYFPTAANLSGVPPQP 631
AG Q + Y+ PS PG N P+ L+ +P QP
Sbjct: 709 QAGKQSHIPYSQQRPSGPGPMNQGPQQSQPPSQQPLTSLPAQP 751
>gi|42476066 SMG-7 homolog isoform 4 [Homo sapiens]
Length = 1049
Score = 42.4 bits (98), Expect = 0.001
Identities = 30/103 (29%), Positives = 40/103 (38%), Gaps = 8/103 (7%)
Query: 537 LNRNGLSPPPCKLPCLSPPSYTFPAPAAV-----IPTEAAIYQPSVILNPRALQPSTAYY 591
++ G PP P PP+Y P P A A + P L P A P+
Sbjct: 561 IHHPGAFPPLPSRPGFPPPTYVIPPPVAFSMGSGYTFPAGVSVPGTFLQPTAHSPAGNQV 620
Query: 592 PAGTQLFMNYTAYYPSPPGSPN---SLGYFPTAANLSGVPPQP 631
AG Q + Y+ PS PG N P+ L+ +P QP
Sbjct: 621 QAGKQSHIPYSQQRPSGPGPMNQGPQQSQPPSQQPLTSLPAQP 663
>gi|42476070 SMG-7 homolog isoform 2 [Homo sapiens]
Length = 1091
Score = 42.4 bits (98), Expect = 0.001
Identities = 30/103 (29%), Positives = 40/103 (38%), Gaps = 8/103 (7%)
Query: 537 LNRNGLSPPPCKLPCLSPPSYTFPAPAAV-----IPTEAAIYQPSVILNPRALQPSTAYY 591
++ G PP P PP+Y P P A A + P L P A P+
Sbjct: 603 IHHPGAFPPLPSRPGFPPPTYVIPPPVAFSMGSGYTFPAGVSVPGTFLQPTAHSPAGNQV 662
Query: 592 PAGTQLFMNYTAYYPSPPGSPN---SLGYFPTAANLSGVPPQP 631
AG Q + Y+ PS PG N P+ L+ +P QP
Sbjct: 663 QAGKQSHIPYSQQRPSGPGPMNQGPQQSQPPSQQPLTSLPAQP 705
>gi|98986457 host cell factor 1 [Homo sapiens]
Length = 2035
Score = 34.7 bits (78), Expect = 0.30
Identities = 32/103 (31%), Positives = 43/103 (41%), Gaps = 16/103 (15%)
Query: 543 SPPPCKLPCLSPPSYTFPAPAAVIPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMNYT 602
SP P +P + PAPAA P + Q + L P+A P T +
Sbjct: 411 SPTPNPVPSVPANPPKSPAPAAAAPAVQPLTQVGITLLPQAAPAP----PTTTTI----- 461
Query: 603 AYYPSPPGSPNSLGYFPTAANLSGVPPQPGTVVRMQGLAYNTG 645
P+ PGS S+ PTAA GVP V+++ G TG
Sbjct: 462 QVLPTVPGSSISV---PTAARTQGVP----AVLKVTGPQATTG 497
Score = 29.6 bits (65), Expect = 9.6
Identities = 25/94 (26%), Positives = 33/94 (35%), Gaps = 6/94 (6%)
Query: 557 YTFPAPAAVIPTEAAIYQPSVILNPRALQPSTAYYPAGTQLFMNYTAYYPSPPGSPNSLG 616
Y PA AA + PSV NP A PA L P +P
Sbjct: 400 YDIPATAATATSPTPNPVPSVPANPPKSPAPAAAAPAVQPLTQVGITLLPQAAPAP---- 455
Query: 617 YFPTAANLSGVPPQPGTVVRMQGLAYNTGVKEIL 650
PT + +P PG+ + + A GV +L
Sbjct: 456 --PTTTTIQVLPTVPGSSISVPTAARTQGVPAVL 487
>gi|150417989 cyclin K isoform 1 [Homo sapiens]
Length = 580
Score = 34.3 bits (77), Expect = 0.39
Identities = 29/95 (30%), Positives = 35/95 (36%), Gaps = 8/95 (8%)
Query: 543 SPPPCKLPCLSPPSYTFPAPAAVIPTEA-----AIYQPSVILNPRALQPSTAYYPAGTQL 597
+PPP +P PP +FP PA PT Y P+ P L P+ A P
Sbjct: 481 NPPPPPVP---PPPASFPPPAIPPPTPGYPPPPPTYNPNFPPPPPRLPPTHAVPPHPPPG 537
Query: 598 FMNYTAYYPSPPGSPNSLGYFPTAANLSGVPPQPG 632
A YP P P P G+PP G
Sbjct: 538 LGLPPASYPPPAVPPGGQPPVPPPIPPPGMPPVGG 572
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,778,087
Number of Sequences: 37866
Number of extensions: 1350359
Number of successful extensions: 5640
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 94
Number of HSP's that attempted gapping in prelim test: 4970
Number of HSP's gapped (non-prelim): 468
length of query: 681
length of database: 18,247,518
effective HSP length: 109
effective length of query: 572
effective length of database: 14,120,124
effective search space: 8076710928
effective search space used: 8076710928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.