Search of human proteins with 56117850

Search of human proteins with 56117850

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|56117850 upstream of NRAS isoform 2 [Homo sapiens]
         (767 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|194473720 upstream of NRAS isoform 3 [Homo sapiens]               1541   0.0  
gi|56117850 upstream of NRAS isoform 2 [Homo sapiens]                1541   0.0  
gi|56117852 upstream of NRAS isoform 1 [Homo sapiens]                1524   0.0  
gi|109715854 calcium-regulated heat-stable protein 1 [Homo sapiens]    34   0.58 
gi|109715858 calcium-regulated heat-stable protein 1 [Homo sapiens]    34   0.58 
gi|54792100 erbB-3 isoform 1 precursor [Homo sapiens]                  33   1.00 
gi|156415990 Y box binding protein 2 [Homo sapiens]                    31   3.8  
gi|110349721 titin isoform novex-3 [Homo sapiens]                      30   6.5  
gi|34098946 nuclease sensitive element binding protein 1 [Homo s...    30   6.5  
gi|224586884 cold shock domain protein A isoform b [Homo sapiens]      30   6.5  
gi|224586882 cold shock domain protein A isoform a [Homo sapiens]      30   6.5  
gi|27262628 nuclear autoantigenic sperm protein isoform 2 [Homo ...    30   6.5  
gi|27262634 nuclear autoantigenic sperm protein isoform 1 [Homo ...    30   6.5  
gi|148886692 FAT tumor suppressor homolog 3 [Homo sapiens]             30   8.4  

>gi|194473720 upstream of NRAS isoform 3 [Homo sapiens]
          Length = 813

 Score = 1541 bits (3989), Expect = 0.0
 Identities = 767/767 (100%), Positives = 767/767 (100%)

Query: 1   MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNL 60
           MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNL
Sbjct: 47  MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNL 106

Query: 61  QDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERMNGQEVFYLTYTPEDVEGNVQ 120
           QDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERMNGQEVFYLTYTPEDVEGNVQ
Sbjct: 107 QDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERMNGQEVFYLTYTPEDVEGNVQ 166

Query: 121 LETGDKINFVIDNNKHTGAVSARNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIFF 180
           LETGDKINFVIDNNKHTGAVSARNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIFF
Sbjct: 167 LETGDKINFVIDNNKHTGAVSARNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIFF 226

Query: 181 HYSEFKGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVI 240
           HYSEFKGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVI
Sbjct: 227 HYSEFKGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVI 286

Query: 241 PKVPSKNQNDPLPGRIKVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERA 300
           PKVPSKNQNDPLPGRIKVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERA
Sbjct: 287 PKVPSKNQNDPLPGRIKVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERA 346

Query: 301 TNIEVLSNTFQFTNEAREMGVIAAMRDGFGFIKCVDRDVRMFFHFSEILDGNQLHIADEV 360
           TNIEVLSNTFQFTNEAREMGVIAAMRDGFGFIKCVDRDVRMFFHFSEILDGNQLHIADEV
Sbjct: 347 TNIEVLSNTFQFTNEAREMGVIAAMRDGFGFIKCVDRDVRMFFHFSEILDGNQLHIADEV 406

Query: 361 EFTVVPDMLSAQRNHAIRIKKLPKGTVSFHSHSDHRFLGTVEKEATFSNPKTTSPNKGKE 420
           EFTVVPDMLSAQRNHAIRIKKLPKGTVSFHSHSDHRFLGTVEKEATFSNPKTTSPNKGKE
Sbjct: 407 EFTVVPDMLSAQRNHAIRIKKLPKGTVSFHSHSDHRFLGTVEKEATFSNPKTTSPNKGKE 466

Query: 421 KEAEDGIIAYDDCGVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLLG 480
           KEAEDGIIAYDDCGVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLLG
Sbjct: 467 KEAEDGIIAYDDCGVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLLG 526

Query: 481 RNSNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGKG 540
           RNSNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGKG
Sbjct: 527 RNSNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGKG 586

Query: 541 NKVSAEKVNKTHSVNGITEEADPTIYSGKVIRPLRSVDPTQTEYQGMIEIVEEGDMKGEV 600
           NKVSAEKVNKTHSVNGITEEADPTIYSGKVIRPLRSVDPTQTEYQGMIEIVEEGDMKGEV
Sbjct: 587 NKVSAEKVNKTHSVNGITEEADPTIYSGKVIRPLRSVDPTQTEYQGMIEIVEEGDMKGEV 646

Query: 601 YPFGIVGMANKGDCLQKGESVKFQLCVLGQNAQTMAYNITPLRRATVECVKDQFGFINYE 660
           YPFGIVGMANKGDCLQKGESVKFQLCVLGQNAQTMAYNITPLRRATVECVKDQFGFINYE
Sbjct: 647 YPFGIVGMANKGDCLQKGESVKFQLCVLGQNAQTMAYNITPLRRATVECVKDQFGFINYE 706

Query: 661 VGDSKKLFFHVKEVQDGIELQAGDEVEFSVILNQRTGKCSACNVWRVCEGPKAVAAPRPD 720
           VGDSKKLFFHVKEVQDGIELQAGDEVEFSVILNQRTGKCSACNVWRVCEGPKAVAAPRPD
Sbjct: 707 VGDSKKLFFHVKEVQDGIELQAGDEVEFSVILNQRTGKCSACNVWRVCEGPKAVAAPRPD 766

Query: 721 RLVNRLKNITLDDASAPRLMVLRQPRGPDNSMGFGAERKIRQAGVID 767
           RLVNRLKNITLDDASAPRLMVLRQPRGPDNSMGFGAERKIRQAGVID
Sbjct: 767 RLVNRLKNITLDDASAPRLMVLRQPRGPDNSMGFGAERKIRQAGVID 813


>gi|56117850 upstream of NRAS isoform 2 [Homo sapiens]
          Length = 767

 Score = 1541 bits (3989), Expect = 0.0
 Identities = 767/767 (100%), Positives = 767/767 (100%)

Query: 1   MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNL 60
           MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNL
Sbjct: 1   MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNL 60

Query: 61  QDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERMNGQEVFYLTYTPEDVEGNVQ 120
           QDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERMNGQEVFYLTYTPEDVEGNVQ
Sbjct: 61  QDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERMNGQEVFYLTYTPEDVEGNVQ 120

Query: 121 LETGDKINFVIDNNKHTGAVSARNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIFF 180
           LETGDKINFVIDNNKHTGAVSARNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIFF
Sbjct: 121 LETGDKINFVIDNNKHTGAVSARNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIFF 180

Query: 181 HYSEFKGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVI 240
           HYSEFKGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVI
Sbjct: 181 HYSEFKGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVI 240

Query: 241 PKVPSKNQNDPLPGRIKVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERA 300
           PKVPSKNQNDPLPGRIKVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERA
Sbjct: 241 PKVPSKNQNDPLPGRIKVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERA 300

Query: 301 TNIEVLSNTFQFTNEAREMGVIAAMRDGFGFIKCVDRDVRMFFHFSEILDGNQLHIADEV 360
           TNIEVLSNTFQFTNEAREMGVIAAMRDGFGFIKCVDRDVRMFFHFSEILDGNQLHIADEV
Sbjct: 301 TNIEVLSNTFQFTNEAREMGVIAAMRDGFGFIKCVDRDVRMFFHFSEILDGNQLHIADEV 360

Query: 361 EFTVVPDMLSAQRNHAIRIKKLPKGTVSFHSHSDHRFLGTVEKEATFSNPKTTSPNKGKE 420
           EFTVVPDMLSAQRNHAIRIKKLPKGTVSFHSHSDHRFLGTVEKEATFSNPKTTSPNKGKE
Sbjct: 361 EFTVVPDMLSAQRNHAIRIKKLPKGTVSFHSHSDHRFLGTVEKEATFSNPKTTSPNKGKE 420

Query: 421 KEAEDGIIAYDDCGVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLLG 480
           KEAEDGIIAYDDCGVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLLG
Sbjct: 421 KEAEDGIIAYDDCGVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLLG 480

Query: 481 RNSNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGKG 540
           RNSNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGKG
Sbjct: 481 RNSNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGKG 540

Query: 541 NKVSAEKVNKTHSVNGITEEADPTIYSGKVIRPLRSVDPTQTEYQGMIEIVEEGDMKGEV 600
           NKVSAEKVNKTHSVNGITEEADPTIYSGKVIRPLRSVDPTQTEYQGMIEIVEEGDMKGEV
Sbjct: 541 NKVSAEKVNKTHSVNGITEEADPTIYSGKVIRPLRSVDPTQTEYQGMIEIVEEGDMKGEV 600

Query: 601 YPFGIVGMANKGDCLQKGESVKFQLCVLGQNAQTMAYNITPLRRATVECVKDQFGFINYE 660
           YPFGIVGMANKGDCLQKGESVKFQLCVLGQNAQTMAYNITPLRRATVECVKDQFGFINYE
Sbjct: 601 YPFGIVGMANKGDCLQKGESVKFQLCVLGQNAQTMAYNITPLRRATVECVKDQFGFINYE 660

Query: 661 VGDSKKLFFHVKEVQDGIELQAGDEVEFSVILNQRTGKCSACNVWRVCEGPKAVAAPRPD 720
           VGDSKKLFFHVKEVQDGIELQAGDEVEFSVILNQRTGKCSACNVWRVCEGPKAVAAPRPD
Sbjct: 661 VGDSKKLFFHVKEVQDGIELQAGDEVEFSVILNQRTGKCSACNVWRVCEGPKAVAAPRPD 720

Query: 721 RLVNRLKNITLDDASAPRLMVLRQPRGPDNSMGFGAERKIRQAGVID 767
           RLVNRLKNITLDDASAPRLMVLRQPRGPDNSMGFGAERKIRQAGVID
Sbjct: 721 RLVNRLKNITLDDASAPRLMVLRQPRGPDNSMGFGAERKIRQAGVID 767


>gi|56117852 upstream of NRAS isoform 1 [Homo sapiens]
          Length = 798

 Score = 1524 bits (3947), Expect = 0.0
 Identities = 767/798 (96%), Positives = 767/798 (96%), Gaps = 31/798 (3%)

Query: 1   MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNL 60
           MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNL
Sbjct: 1   MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNL 60

Query: 61  QDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERMNGQ----------------- 103
           QDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERMNGQ                 
Sbjct: 61  QDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERMNGQVVCAVPHNLESKSPAAP 120

Query: 104 --------------EVFYLTYTPEDVEGNVQLETGDKINFVIDNNKHTGAVSARNIMLLK 149
                         EVFYLTYTPEDVEGNVQLETGDKINFVIDNNKHTGAVSARNIMLLK
Sbjct: 121 GQSPTGSVCYERNGEVFYLTYTPEDVEGNVQLETGDKINFVIDNNKHTGAVSARNIMLLK 180

Query: 150 KKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQPGDDVEFTIKDRNGKE 209
           KKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQPGDDVEFTIKDRNGKE
Sbjct: 181 KKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQPGDDVEFTIKDRNGKE 240

Query: 210 VATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPSKNQNDPLPGRIKVDFVIPKELPFG 269
           VATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPSKNQNDPLPGRIKVDFVIPKELPFG
Sbjct: 241 VATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPSKNQNDPLPGRIKVDFVIPKELPFG 300

Query: 270 DKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMGVIAAMRDGF 329
           DKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMGVIAAMRDGF
Sbjct: 301 DKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMGVIAAMRDGF 360

Query: 330 GFIKCVDRDVRMFFHFSEILDGNQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSF 389
           GFIKCVDRDVRMFFHFSEILDGNQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSF
Sbjct: 361 GFIKCVDRDVRMFFHFSEILDGNQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSF 420

Query: 390 HSHSDHRFLGTVEKEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGS 449
           HSHSDHRFLGTVEKEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGS
Sbjct: 421 HSHSDHRFLGTVEKEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGS 480

Query: 450 TSPQIGDKVEFSISDKQRPGQQVATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHDK 509
           TSPQIGDKVEFSISDKQRPGQQVATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHDK
Sbjct: 481 TSPQIGDKVEFSISDKQRPGQQVATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHDK 540

Query: 510 EIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHSVNGITEEADPTIYSGK 569
           EIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHSVNGITEEADPTIYSGK
Sbjct: 541 EIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHSVNGITEEADPTIYSGK 600

Query: 570 VIRPLRSVDPTQTEYQGMIEIVEEGDMKGEVYPFGIVGMANKGDCLQKGESVKFQLCVLG 629
           VIRPLRSVDPTQTEYQGMIEIVEEGDMKGEVYPFGIVGMANKGDCLQKGESVKFQLCVLG
Sbjct: 601 VIRPLRSVDPTQTEYQGMIEIVEEGDMKGEVYPFGIVGMANKGDCLQKGESVKFQLCVLG 660

Query: 630 QNAQTMAYNITPLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGIELQAGDEVEFS 689
           QNAQTMAYNITPLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGIELQAGDEVEFS
Sbjct: 661 QNAQTMAYNITPLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGIELQAGDEVEFS 720

Query: 690 VILNQRTGKCSACNVWRVCEGPKAVAAPRPDRLVNRLKNITLDDASAPRLMVLRQPRGPD 749
           VILNQRTGKCSACNVWRVCEGPKAVAAPRPDRLVNRLKNITLDDASAPRLMVLRQPRGPD
Sbjct: 721 VILNQRTGKCSACNVWRVCEGPKAVAAPRPDRLVNRLKNITLDDASAPRLMVLRQPRGPD 780

Query: 750 NSMGFGAERKIRQAGVID 767
           NSMGFGAERKIRQAGVID
Sbjct: 781 NSMGFGAERKIRQAGVID 798


>gi|109715854 calcium-regulated heat-stable protein 1 [Homo sapiens]
          Length = 147

 Score = 33.9 bits (76), Expect = 0.58
 Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 500 GFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSK--GKGNKVSAEKVNKTHSVNGI 557
           GFI  A+   +IF H S+  G+   +E GD V Y +     K  K+ A +V  TH   G 
Sbjct: 77  GFITPADGGPDIFLHISDVEGEYVPVE-GDEVTYKMCSIPPKNEKLQAVEVVITHLAPGT 135

Query: 558 TEEADPTIYSGKVI 571
             E     +SG VI
Sbjct: 136 KHET----WSGHVI 145


>gi|109715858 calcium-regulated heat-stable protein 1 [Homo sapiens]
          Length = 147

 Score = 33.9 bits (76), Expect = 0.58
 Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 500 GFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSK--GKGNKVSAEKVNKTHSVNGI 557
           GFI  A+   +IF H S+  G+   +E GD V Y +     K  K+ A +V  TH   G 
Sbjct: 77  GFITPADGGPDIFLHISDVEGEYVPVE-GDEVTYKMCSIPPKNEKLQAVEVVITHLAPGT 135

Query: 558 TEEADPTIYSGKVI 571
             E     +SG VI
Sbjct: 136 KHET----WSGHVI 145


>gi|54792100 erbB-3 isoform 1 precursor [Homo sapiens]
          Length = 1342

 Score = 33.1 bits (74), Expect = 1.00
 Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 568 GKVIRPLRSVDPTQTEYQGMIEIVEEGDM-KGEVYPFGIVGMANKGDCLQKGESVKFQLC 626
           G+ I PL   DP++   + +  I +E ++ K +V   G+ G  +KG  + +GES+K  +C
Sbjct: 684 GESIEPL---DPSEKANKVLARIFKETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVC 740

Query: 627 V 627
           +
Sbjct: 741 I 741


>gi|156415990 Y box binding protein 2 [Homo sapiens]
          Length = 364

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 5/58 (8%)

Query: 162 MKEAFGFIERGDVVKEIFFHYSEFKGD-----LETLQPGDDVEFTIKDRNGKEVATDV 214
           ++  +GFI R D  +++F H +  K +     L ++  G+ VEF + +      AT+V
Sbjct: 103 VRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNV 160


>gi|110349721 titin isoform novex-3 [Homo sapiens]
          Length = 5604

 Score = 30.4 bits (67), Expect = 6.5
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 125  DKINFVIDNNKHTGAVSARNIMLLKKKQARCQGVVCAMKEAF--GFIERGDVVKEIF 179
            D I +VI   K +  +  RN+ L      RC+ V C + EA   GF+  GD   EIF
Sbjct: 5423 DNIKYVISEEKGSHTLKIRNVCLSDSATYRCRAVNC-VGEAICRGFLTMGD--SEIF 5476


>gi|34098946 nuclease sensitive element binding protein 1 [Homo
           sapiens]
          Length = 324

 Score = 30.4 bits (67), Expect = 6.5
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 162 MKEAFGFIERGDVVKEIFFHYSEFKGD-----LETLQPGDDVEF-TIKDRNGKEVA 211
           ++  +GFI R D  +++F H +  K +     L ++  G+ VEF  ++   G E A
Sbjct: 68  VRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAA 123


>gi|224586884 cold shock domain protein A isoform b [Homo sapiens]
          Length = 303

 Score = 30.4 bits (67), Expect = 6.5
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 162 MKEAFGFIERGDVVKEIFFHYSEFKGD-----LETLQPGDDVEF-TIKDRNGKEVA 211
           ++  +GFI R D  +++F H +  K +     L ++  G+ VEF  ++   G E A
Sbjct: 100 VRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAA 155


>gi|224586882 cold shock domain protein A isoform a [Homo sapiens]
          Length = 372

 Score = 30.4 bits (67), Expect = 6.5
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 162 MKEAFGFIERGDVVKEIFFHYSEFKGD-----LETLQPGDDVEF-TIKDRNGKEVA 211
           ++  +GFI R D  +++F H +  K +     L ++  G+ VEF  ++   G E A
Sbjct: 100 VRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAA 155


>gi|27262628 nuclear autoantigenic sperm protein isoform 2 [Homo
           sapiens]
          Length = 788

 Score = 30.4 bits (67), Expect = 6.5
 Identities = 38/154 (24%), Positives = 58/154 (37%), Gaps = 17/154 (11%)

Query: 187 GDLETLQPGDDVE--FTIKDRNGKEVATDVRLLP--QGTVIFEDISIEHFEGTVTKVIPK 242
           GD   ++P   +E     KD +G E     +L+P  + T +  + S    +G  TKV   
Sbjct: 387 GDQTPIEPQTSIERLTETKDGSGLEEKVRAKLVPSQEETKLSVEESEAAGDGVDTKVAQG 446

Query: 243 VPSKNQNDPLPGRIKVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRR-DKLERAT 301
              K+  D      KV     +E    ++  K      EG+    +   D+  DK E   
Sbjct: 447 ATEKSPED------KVQIAANEETQEREEQMK------EGEETEGSEEDDKENDKTEEMP 494

Query: 302 NIEVLSNTFQFTNEAREMGVIAAMRDGFGFIKCV 335
           N  VL N     NE  E+G +    D     K +
Sbjct: 495 NDSVLENKSLQENEEEEIGNLELAWDMLDLAKII 528


>gi|27262634 nuclear autoantigenic sperm protein isoform 1 [Homo
           sapiens]
          Length = 790

 Score = 30.4 bits (67), Expect = 6.5
 Identities = 38/154 (24%), Positives = 58/154 (37%), Gaps = 17/154 (11%)

Query: 187 GDLETLQPGDDVE--FTIKDRNGKEVATDVRLLP--QGTVIFEDISIEHFEGTVTKVIPK 242
           GD   ++P   +E     KD +G E     +L+P  + T +  + S    +G  TKV   
Sbjct: 389 GDQTPIEPQTSIERLTETKDGSGLEEKVRAKLVPSQEETKLSVEESEAAGDGVDTKVAQG 448

Query: 243 VPSKNQNDPLPGRIKVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRR-DKLERAT 301
              K+  D      KV     +E    ++  K      EG+    +   D+  DK E   
Sbjct: 449 ATEKSPED------KVQIAANEETQEREEQMK------EGEETEGSEEDDKENDKTEEMP 496

Query: 302 NIEVLSNTFQFTNEAREMGVIAAMRDGFGFIKCV 335
           N  VL N     NE  E+G +    D     K +
Sbjct: 497 NDSVLENKSLQENEEEEIGNLELAWDMLDLAKII 530


>gi|148886692 FAT tumor suppressor homolog 3 [Homo sapiens]
          Length = 4557

 Score = 30.0 bits (66), Expect = 8.4
 Identities = 36/167 (21%), Positives = 72/167 (43%), Gaps = 14/167 (8%)

Query: 436  KLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLLGRNSNSKRLLGYVATL 495
            ++ +    +D+  ++   +G     ++     PG  +   V  + ++      + YV  L
Sbjct: 2067 RVVVRVNIEDINDNSPVFVGLPYYAAVQVDAEPGTLIYQ-VTAIDKDKGPNGEVTYV--L 2123

Query: 496  KDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHS-V 554
            +D++G  E   +   +    + F+ D+ ++E G  +   L+K  G    +  V    + V
Sbjct: 2124 QDDYGHFEINPNSGNVILKEA-FNSDLSNIEYGVTI---LAKDGGKPSLSTSVELPITIV 2179

Query: 555  NGITEEADPTIYSGKV---IR---PLRSVDPTQTEYQGMIEIVEEGD 595
            N      D   Y+  V   IR   P+ S++ T  E QG+I I+ +GD
Sbjct: 2180 NKAMPVFDKPFYTASVNEDIRMNTPILSINATSPEGQGIIYIIIDGD 2226


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,691,684
Number of Sequences: 37866
Number of extensions: 1294721
Number of successful extensions: 2840
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2708
Number of HSP's gapped (non-prelim): 22
length of query: 767
length of database: 18,247,518
effective HSP length: 110
effective length of query: 657
effective length of database: 14,082,258
effective search space: 9252043506
effective search space used: 9252043506
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.