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Search of human proteins with 55743128
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|55743128 ribosomal protein L32 [Homo sapiens]
(135 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|55743130 ribosomal protein L32 [Homo sapiens] 272 5e-74
gi|55743128 ribosomal protein L32 [Homo sapiens] 272 5e-74
gi|4506635 ribosomal protein L32 [Homo sapiens] 272 5e-74
gi|239747637 PREDICTED: hypothetical protein XP_002347915, parti... 61 2e-10
gi|38348408 hypothetical protein LOC375444 [Homo sapiens] 32 0.20
gi|115527080 metastasis associated protein [Homo sapiens] 30 0.59
gi|38201680 meiotic recombination protein SPO11 isoform b [Homo ... 28 2.3
gi|27477109 itchy homolog E3 ubiquitin protein ligase [Homo sapi... 27 3.8
gi|21040249 retinoic acid early transcript 1E [Homo sapiens] 27 5.0
gi|193211480 superkiller viralicidic activity 2-like 2 [Homo sap... 27 5.0
gi|206597470 neural precursor cell expressed, developmentally do... 27 6.6
gi|206597468 neural precursor cell expressed, developmentally do... 27 6.6
gi|23097254 neural precursor cell expressed, developmentally dow... 27 6.6
gi|206597465 neural precursor cell expressed, developmentally do... 27 6.6
gi|32967605 bromodomain adjacent to zinc finger domain, 1A isofo... 27 6.6
gi|32967603 bromodomain adjacent to zinc finger domain, 1A isofo... 27 6.6
gi|28195388 RAB11 family interacting protein 4 (class II) [Homo ... 27 6.6
gi|130502162 RAS protein activator like 3 [Homo sapiens] 26 8.6
gi|156142180 CXXC finger 1 (PHD domain) isoform 2 [Homo sapiens] 26 8.6
gi|189011592 amyotrophic lateral sclerosis 2 (juvenile) chromoso... 26 8.6
gi|189011586 amyotrophic lateral sclerosis 2 (juvenile) chromoso... 26 8.6
gi|194306647 protein phosphatase 1, regulatory subunit 14D isofo... 26 8.6
>gi|55743130 ribosomal protein L32 [Homo sapiens]
Length = 135
Score = 272 bits (696), Expect = 5e-74
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 1 MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY 60
MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY
Sbjct: 1 MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY 60
Query: 61 GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI 120
GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI
Sbjct: 61 GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI 120
Query: 121 RVTNPNARLRSEENE 135
RVTNPNARLRSEENE
Sbjct: 121 RVTNPNARLRSEENE 135
>gi|55743128 ribosomal protein L32 [Homo sapiens]
Length = 135
Score = 272 bits (696), Expect = 5e-74
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 1 MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY 60
MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY
Sbjct: 1 MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY 60
Query: 61 GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI 120
GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI
Sbjct: 61 GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI 120
Query: 121 RVTNPNARLRSEENE 135
RVTNPNARLRSEENE
Sbjct: 121 RVTNPNARLRSEENE 135
>gi|4506635 ribosomal protein L32 [Homo sapiens]
Length = 135
Score = 272 bits (696), Expect = 5e-74
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 1 MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY 60
MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY
Sbjct: 1 MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGY 60
Query: 61 GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI 120
GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI
Sbjct: 61 GSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAI 120
Query: 121 RVTNPNARLRSEENE 135
RVTNPNARLRSEENE
Sbjct: 121 RVTNPNARLRSEENE 135
>gi|239747637 PREDICTED: hypothetical protein XP_002347915, partial
[Homo sapiens]
Length = 346
Score = 61.2 bits (147), Expect = 2e-10
Identities = 44/135 (32%), Positives = 62/135 (45%), Gaps = 51/135 (37%)
Query: 3 ALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGS 62
+LRPL++PK ++KR K FI HQ D+
Sbjct: 8 SLRPLMEPKSIQKRIKNFIWHQLDQ----------------------------------- 32
Query: 63 NKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNR--KAIVERAAQLAI 120
FLVH +K+LEVLLM ++S CA A SSKN+ + +++ A+
Sbjct: 33 --------------FLVHYIKKLEVLLMGSESDCAGTARRASSKNQEPQRCFGKSSPAAV 78
Query: 121 RVTNPNARLRSEENE 135
RV+NPNA L +ENE
Sbjct: 79 RVSNPNAGLPRQENE 93
>gi|38348408 hypothetical protein LOC375444 [Homo sapiens]
Length = 638
Score = 31.6 bits (70), Expect = 0.20
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
Query: 70 LPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKA----IVERAAQLAIRVTNP 125
LP +F VH +C S ++ + +S N KA +VE+ ++ IR P
Sbjct: 136 LPRSQHEFTVH--------FLCKVSQKSDSSAVLSETNNKAPKDKLVEKTGKICIRGNLP 187
Query: 126 NARLRSEENE 135
RL+++ENE
Sbjct: 188 GQRLKNKENE 197
>gi|115527080 metastasis associated protein [Homo sapiens]
Length = 715
Score = 30.0 bits (66), Expect = 0.59
Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 32 KRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPS 72
KR++ + G+D +++R +LMP+ G ++ + +HM PS
Sbjct: 582 KRSYEQHNGVDGNMKKR----LLMPSRGLANHGQARHMGPS 618
>gi|38201680 meiotic recombination protein SPO11 isoform b [Homo
sapiens]
Length = 358
Score = 28.1 bits (61), Expect = 2.3
Identities = 16/78 (20%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKF-LVH 80
RH+ ++R R+P +R+ RF+ + + + + + +K K P +KF L+
Sbjct: 18 RHRESLLAALRRGGREPPTGGSRLASRFEDSVGLQMVSHCTTRKIKSDSPKSAQKFSLIL 77
Query: 81 NVKELEVLLMCNKSYCAE 98
+ + L+ + +Y +
Sbjct: 78 KILSMIYKLVQSNTYATK 95
>gi|27477109 itchy homolog E3 ubiquitin protein ligase [Homo
sapiens]
Length = 862
Score = 27.3 bits (59), Expect = 3.8
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 16/64 (25%)
Query: 26 DRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKEL 85
+ Y+++ WR RG++ + + F+G +LP + ++ + KEL
Sbjct: 694 EEYIRMVAEWRLSRGVEEQTQAFFEG--------------FNEILPQQYLQYF--DAKEL 737
Query: 86 EVLL 89
EVLL
Sbjct: 738 EVLL 741
>gi|21040249 retinoic acid early transcript 1E [Homo sapiens]
Length = 263
Score = 26.9 bits (58), Expect = 5.0
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 21 IRHQSDRYVKIKRNWRKPRGIDNRVRRRFKG 51
I H++ KIK W+K RG++ R+ KG
Sbjct: 160 INHEAS---KIKETWKKDRGLEKYFRKLSKG 187
>gi|193211480 superkiller viralicidic activity 2-like 2 [Homo
sapiens]
Length = 1042
Score = 26.9 bits (58), Expect = 5.0
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 30 KIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKK 65
K K W+ P G ++ +RF G++ + G NK+
Sbjct: 29 KDKGKWKGPPGSADKAGKRFDGKLQSESTNNGKNKR 64
>gi|206597470 neural precursor cell expressed, developmentally
down-regulated 1 isoform c [Homo sapiens]
Length = 571
Score = 26.6 bits (57), Expect = 6.6
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 15 KRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNI---------GYGSNKK 65
KR + ++ D+ + NW + G+I++ ++ G+GSN+
Sbjct: 20 KRVHRSLKDHKDQVTCVTYNWNDCYIASGSL----SGEIILHSVTTNLSSTPFGHGSNQS 75
Query: 66 TKHMLPSGFRKFLVHNVKE 84
+H+ S F+K L+ +V +
Sbjct: 76 VRHLKYSLFKKSLLGSVSD 94
>gi|206597468 neural precursor cell expressed, developmentally
down-regulated 1 isoform b [Homo sapiens]
Length = 660
Score = 26.6 bits (57), Expect = 6.6
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 15 KRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNI---------GYGSNKK 65
KR + ++ D+ + NW + G+I++ ++ G+GSN+
Sbjct: 109 KRVHRSLKDHKDQVTCVTYNWNDCYIASGSL----SGEIILHSVTTNLSSTPFGHGSNQS 164
Query: 66 TKHMLPSGFRKFLVHNVKE 84
+H+ S F+K L+ +V +
Sbjct: 165 VRHLKYSLFKKSLLGSVSD 183
>gi|23097254 neural precursor cell expressed, developmentally
down-regulated 1 isoform b [Homo sapiens]
Length = 660
Score = 26.6 bits (57), Expect = 6.6
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 15 KRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNI---------GYGSNKK 65
KR + ++ D+ + NW + G+I++ ++ G+GSN+
Sbjct: 109 KRVHRSLKDHKDQVTCVTYNWNDCYIASGSL----SGEIILHSVTTNLSSTPFGHGSNQS 164
Query: 66 TKHMLPSGFRKFLVHNVKE 84
+H+ S F+K L+ +V +
Sbjct: 165 VRHLKYSLFKKSLLGSVSD 183
>gi|206597465 neural precursor cell expressed, developmentally
down-regulated 1 isoform a [Homo sapiens]
Length = 667
Score = 26.6 bits (57), Expect = 6.6
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 15 KRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNI---------GYGSNKK 65
KR + ++ D+ + NW + G+I++ ++ G+GSN+
Sbjct: 116 KRVHRSLKDHKDQVTCVTYNWNDCYIASGSL----SGEIILHSVTTNLSSTPFGHGSNQS 171
Query: 66 TKHMLPSGFRKFLVHNVKE 84
+H+ S F+K L+ +V +
Sbjct: 172 VRHLKYSLFKKSLLGSVSD 190
>gi|32967605 bromodomain adjacent to zinc finger domain, 1A isoform
b [Homo sapiens]
Length = 1524
Score = 26.6 bits (57), Expect = 6.6
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 11 KIVKKRTKKFIRHQSDRYVKIKRNWRKPR 39
K+ +++ ++ +R + +YV+ + W KPR
Sbjct: 371 KVEREKEREKLREEKRKYVEYLKQWSKPR 399
>gi|32967603 bromodomain adjacent to zinc finger domain, 1A isoform
a [Homo sapiens]
Length = 1556
Score = 26.6 bits (57), Expect = 6.6
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 11 KIVKKRTKKFIRHQSDRYVKIKRNWRKPR 39
K+ +++ ++ +R + +YV+ + W KPR
Sbjct: 371 KVEREKEREKLREEKRKYVEYLKQWSKPR 399
>gi|28195388 RAB11 family interacting protein 4 (class II) [Homo
sapiens]
Length = 637
Score = 26.6 bits (57), Expect = 6.6
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 78 LVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
LVH V ELE ++ ++ + + ++R+A + + A V NAR++ E E
Sbjct: 375 LVHRVHELEEMVKDQETTAEQALEEEARRHREAYGKLEREKATEVELLNARVQQLEEE 432
>gi|130502162 RAS protein activator like 3 [Homo sapiens]
Length = 1011
Score = 26.2 bits (56), Expect = 8.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 10 PKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRR 48
P+ + K T + QS R V+ +W +PR + R RR
Sbjct: 772 PRDLPKHTPLISKSQSLRSVRRSESWARPRPDEERPLRR 810
>gi|156142180 CXXC finger 1 (PHD domain) isoform 2 [Homo sapiens]
Length = 656
Score = 26.2 bits (56), Expect = 8.6
Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 20/136 (14%)
Query: 8 VKPKIVKKRTKKFIRHQSDRY------VKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYG 61
VK K VK+R KK + + +RY K K W+ P D + Q L P
Sbjct: 325 VKVKHVKRREKKSEKKKEERYKRHRQKQKHKDKWKHPERADAKDPASLP-QCLGPGCVRP 383
Query: 62 SNKKTKHMLPSGFRKFLVHNVKEL--EVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLA 119
+ +K+ K + + E+ + + +S C ++ ++ K ++ER
Sbjct: 384 AQPSSKYCSDDCGMKLAANRIYEILPQRIQQWQQSPC------IAEEHGKKLLER----- 432
Query: 120 IRVTNPNARLRSEENE 135
IR +AR R +E E
Sbjct: 433 IRREQQSARTRLQEME 448
>gi|189011592 amyotrophic lateral sclerosis 2 (juvenile) chromosome
region, candidate 12 isoform b [Homo sapiens]
Length = 422
Score = 26.2 bits (56), Expect = 8.6
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 96 CAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEE 133
CAE+ N +KNR+ A+L+ N A L++E+
Sbjct: 163 CAEMKQNFENKNRELKEAHEAELSELENNYKAALKAEK 200
>gi|189011586 amyotrophic lateral sclerosis 2 (juvenile) chromosome
region, candidate 12 isoform a [Homo sapiens]
Length = 445
Score = 26.2 bits (56), Expect = 8.6
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 96 CAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEE 133
CAE+ N +KNR+ A+L+ N A L++E+
Sbjct: 163 CAEMKQNFENKNRELKEAHEAELSELENNYKAALKAEK 200
>gi|194306647 protein phosphatase 1, regulatory subunit 14D isoform
2 [Homo sapiens]
Length = 200
Score = 26.2 bits (56), Expect = 8.6
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 17 TKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRK 76
T K+ R Q R++++++ W +D +V+ F+ L P + + +LP GF +
Sbjct: 58 TVKYDRGQLQRWLEMEQ-W-----VDAQVQELFQSLALSPRLECSGVIHSLQLLPPGFNR 111
Query: 77 F 77
F
Sbjct: 112 F 112
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.134 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,575,161
Number of Sequences: 37866
Number of extensions: 181887
Number of successful extensions: 354
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 339
Number of HSP's gapped (non-prelim): 23
length of query: 135
length of database: 18,247,518
effective HSP length: 91
effective length of query: 44
effective length of database: 14,801,712
effective search space: 651275328
effective search space used: 651275328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.