Guide to the Human Genome
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Name: LOC100290173 Sequence: fasta or formatted (346aa) NCBI GI: 239747637
Description:

PREDICTED: hypothetical protein XP_002347915, partial

Referenced in:

Ribosomes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         34           2
 C cysteine            4.0         14           1
 D aspartate           3.5         12           2
 E glutamate           6.1         21           2
 F phenylalanine       3.8         13           2
 G glycine             5.8         20           2
 H histidine           1.7          6           1
 I isoleucine          3.5         12           1
 K lysine              4.0         14           2
 L leucine            11.3         39           2
 M methionine          1.2          4           1
 N asparagine          3.8         13           2
 P proline             8.4         29           3
 Q glutamine           4.3         15           1
 R arginine            6.6         23           2
 S serine              8.4         29           2
 T threonine           3.5         12           1
 V valine              6.9         24           2
 W tryptophan          2.9         10           1
 Y tyrosine            0.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347915, parti... 
RPL32                 0.052   ribosomal protein L32 
RPL32                 0.052   ribosomal protein L32 
RPL32                 0.052   ribosomal protein L32 
DRD4                  0.016   dopamine receptor D4 
LOC100293962          0.009   PREDICTED: hypothetical protein 
SCTR                  0.007   secretin receptor precursor 
FAM148B               0.007   nuclear localized factor 2 
USP7                  0.007   ubiquitin specific peptidase 7 
DCDC5                 0.006   PREDICTED: doublecortin domain containing 5 
DCDC5                 0.006   PREDICTED: doublecortin domain containing 5 
DCDC5                 0.006   PREDICTED: doublecortin domain containing 5 
STAP2                 0.006   signal transducing adaptor family member 2 isoform 1...
GBF1                  0.006   golgi-specific brefeldin A resistant guanine nucleoti...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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