Guide to the Human Genome
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Name: C5orf34 Sequence: fasta or formatted (638aa) NCBI GI: 38348408
Description:

hypothetical protein LOC375444

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.0         19           2
 C cysteine            2.8         18           2
 D aspartate           3.8         24           2
 E glutamate           7.4         47           2
 F phenylalanine       3.4         22           1
 G glycine             4.7         30           1
 H histidine           3.3         21           1
 I isoleucine          6.0         38           2
 K lysine              6.9         44           2
 L leucine             9.7         62           3
 M methionine          1.9         12           1
 N asparagine          4.9         31           2
 P proline             5.2         33           2
 Q glutamine           4.7         30           2
 R arginine            4.9         31           2
 S serine             11.0         70           4
 T threonine           5.6         36           2
 V valine              5.8         37           2
 W tryptophan          1.7         11           1
 Y tyrosine            3.4         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC375444 
GPR98                 0.006   G protein-coupled receptor 98 precursor 
RNH1                  0.005   ribonuclease/angiogenin inhibitor 
RNH1                  0.005   ribonuclease/angiogenin inhibitor 
RNH1                  0.005   ribonuclease/angiogenin inhibitor 
RNH1                  0.005   ribonuclease/angiogenin inhibitor 
RNH1                  0.005   ribonuclease/angiogenin inhibitor 
RNH1                  0.005   ribonuclease/angiogenin inhibitor 
RNH1                  0.005   ribonuclease/angiogenin inhibitor 
RNH1                  0.005   ribonuclease/angiogenin inhibitor 
PIR                   0.005   pirin 
PIR                   0.005   pirin 
RPL32                 0.005   ribosomal protein L32 
RPL32                 0.005   ribosomal protein L32 
RPL32                 0.005   ribosomal protein L32 
PCM1                  0.004   pericentriolar material 1 
CSPG4                 0.004   chondroitin sulfate proteoglycan 4 
HFE                   0.004   hemochromatosis protein isoform 4 precursor 
SYNE2                 0.004   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.004   spectrin repeat containing, nuclear envelope 2 isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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